Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00364 ATGGCGGTGGATCTGGCAGTGGTTCTGGCGAAGATGGAGGATCATACGGCGATTCTAGAAGCCTCCTCCGCCGGTTTACAGAGCATGGAGAATCTAATCCGCCTCTTATCCAAACAACCCTCTCAAACCCCTAATTGCTCTGAAATCGCCGATTTCACCGTCTCCAAATTCAAGCGCCTCATTTCCCTCTTGGACAGAACCGGCCACGCTAGATTCCGTCGCGGACCCTCCGATTCCCCAAACCCCCTCCCCAATTCCCCCAATCCAACCTCCATAATCGATTGCCCTAACCCTAATTTCACCCCTGTCGTCAAATTCCCCGATTCTAGGGCTCCGACTGACTCCACCACGACCTCGTCTTTTGTATCCACTATCACCGGCGACGGCAGCGTTTCACTCTTTGCGACGCCGGCAGTCTCCTCCGGTAAACCGCCGCTGTCGCTGAAGAGGAAGTTCGATGACAGATCTCGATTTGGCTGCAAGATTCCTTCCAACCCCTGTCACTGTGCGAAGCGAAGGAAATATGGAGTGAAAAAAACGATACGAGTCCCGGCGATTAGTTCTAAGATCGCCGACATACCTCCCGATGAATACTCTTGGAGAAAGTACGGCCAAAAGCCCATTAAAGGCTCCCCCTATCCTAGAGGGTATTATAGATGCAGCACCGTGAAAGGTTGTCCGGCGAGGAAAAAGGTGGAAAGAGTTCGTGACGATCCGACCATGCTCCTCGTAACATACGACGGGGATCACCGTCACCCGCAGCCTCCGGTAACGCATCTTAACGTGGGTGTCGTTTCCCAGAAATCTTGA 810 52.96 MAVDLAVVLAKMEDHTAILEASSAGLQSMENLIRLLSKQPSQTPNCSEIADFTVSKFKRLISLLDRTGHARFRRGPSDSPNPLPNSPNPTSIIDCPNPNFTPVVKFPDSRAPTDSTTTSSFVSTITGDGSVSLFATPAVSSGKPPLSLKRKFDDRSRFGCKIPSNPCHCAKRRKYGVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYRCSTVKGCPARKKVERVRDDPTMLLVTYDGDHRHPQPPVTHLNVGVVSQKS 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1677276 1678709 - CmaCh10G003640.1 Cma10g00364 301680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00364 269 Pfam WRKY DNA -binding domain 196 253 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma10g00364 269 SMART WRKY_cls 194 254 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma10g00364 269 MobiDBLite consensus disorder prediction 71 94 - -
Cma10g00364 269 Pfam Plant zinc cluster domain 159 192 IPR018872 -
Cma10g00364 269 Gene3D WRKY domain 182 256 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma10g00364 269 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 8 86 - -
Cma10g00364 269 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 113 256 - -
Cma10g00364 269 SUPERFAMILY WRKY DNA-binding domain 192 255 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma10g00364 269 ProSiteProfiles WRKY domain profile. 189 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma10g00364 269 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 8 86 IPR044810 GO:0003700
Cma10g00364 269 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 113 256 IPR044810 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00364 Cma11g00350 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00364 Cma-Chr10:1677276 Cma09g00530 Cma-Chr9:2358729 2.02E-72 dispersed
Cma10g00364 Cma-Chr10:1677276 Cma11g00350 Cma-Chr11:1730598 1.44E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35711 PF03106 WRKY 3.30E-25 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00364 - - bhj:120070667 386.341