Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma10g00364 | ATGGCGGTGGATCTGGCAGTGGTTCTGGCGAAGATGGAGGATCATACGGCGATTCTAGAAGCCTCCTCCGCCGGTTTACAGAGCATGGAGAATCTAATCCGCCTCTTATCCAAACAACCCTCTCAAACCCCTAATTGCTCTGAAATCGCCGATTTCACCGTCTCCAAATTCAAGCGCCTCATTTCCCTCTTGGACAGAACCGGCCACGCTAGATTCCGTCGCGGACCCTCCGATTCCCCAAACCCCCTCCCCAATTCCCCCAATCCAACCTCCATAATCGATTGCCCTAACCCTAATTTCACCCCTGTCGTCAAATTCCCCGATTCTAGGGCTCCGACTGACTCCACCACGACCTCGTCTTTTGTATCCACTATCACCGGCGACGGCAGCGTTTCACTCTTTGCGACGCCGGCAGTCTCCTCCGGTAAACCGCCGCTGTCGCTGAAGAGGAAGTTCGATGACAGATCTCGATTTGGCTGCAAGATTCCTTCCAACCCCTGTCACTGTGCGAAGCGAAGGAAATATGGAGTGAAAAAAACGATACGAGTCCCGGCGATTAGTTCTAAGATCGCCGACATACCTCCCGATGAATACTCTTGGAGAAAGTACGGCCAAAAGCCCATTAAAGGCTCCCCCTATCCTAGAGGGTATTATAGATGCAGCACCGTGAAAGGTTGTCCGGCGAGGAAAAAGGTGGAAAGAGTTCGTGACGATCCGACCATGCTCCTCGTAACATACGACGGGGATCACCGTCACCCGCAGCCTCCGGTAACGCATCTTAACGTGGGTGTCGTTTCCCAGAAATCTTGA | 810 | 52.96 | MAVDLAVVLAKMEDHTAILEASSAGLQSMENLIRLLSKQPSQTPNCSEIADFTVSKFKRLISLLDRTGHARFRRGPSDSPNPLPNSPNPTSIIDCPNPNFTPVVKFPDSRAPTDSTTTSSFVSTITGDGSVSLFATPAVSSGKPPLSLKRKFDDRSRFGCKIPSNPCHCAKRRKYGVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYRCSTVKGCPARKKVERVRDDPTMLLVTYDGDHRHPQPPVTHLNVGVVSQKS | 269 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 1677276 | 1678709 | - | CmaCh10G003640.1 | Cma10g00364 | 301680 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma10g00364 | 269 | Pfam | WRKY DNA -binding domain | 196 | 253 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma10g00364 | 269 | SMART | WRKY_cls | 194 | 254 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma10g00364 | 269 | MobiDBLite | consensus disorder prediction | 71 | 94 | - | - | |
Cma10g00364 | 269 | Pfam | Plant zinc cluster domain | 159 | 192 | IPR018872 | - | |
Cma10g00364 | 269 | Gene3D | WRKY domain | 182 | 256 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma10g00364 | 269 | PANTHER | TRANSCRIPTION FACTOR WRKY FAMILY-RELATED | 8 | 86 | - | - | |
Cma10g00364 | 269 | PANTHER | TRANSCRIPTION FACTOR WRKY FAMILY-RELATED | 113 | 256 | - | - | |
Cma10g00364 | 269 | SUPERFAMILY | WRKY DNA-binding domain | 192 | 255 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma10g00364 | 269 | ProSiteProfiles | WRKY domain profile. | 189 | 255 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma10g00364 | 269 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 8 | 86 | IPR044810 | GO:0003700 | |
Cma10g00364 | 269 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 113 | 256 | IPR044810 | GO:0003700 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma10g00364 | Cma11g00350 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma10g00364 | Cma-Chr10:1677276 | Cma09g00530 | Cma-Chr9:2358729 | 2.02E-72 | dispersed | |
Cma10g00364 | Cma-Chr10:1677276 | Cma11g00350 | Cma-Chr11:1730598 | 1.44E-112 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35711 | PF03106 | WRKY | 3.30E-25 | CL0274 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma10g00364 | - | - | bhj:120070667 | 386.341 |