Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma10g00372 | ATGGATAGTTTCGGAAACGATTGCATGAATTACTTCGGGAGTGATATCTTCATACCAACGGAAGAGCTCGACAGTTGGGGATTCGACGAGCCGGTTTCCGGATACTACGATTCGAGTTCGCCGGAGGGAGTTCTGTCGTCGTCGTCGGCGACGAAGAACATAGCATCGGAGAGGAATAGGAGAAGGAAGCTTAACGAGAGGCTTTTTGCGCTCCGATCGGTCGTTCCTAATATAACTAAGATGGATAAGGCTTCCATTATAAAAGATGCAATCGATTACATCCAAGATTTACATGAGCAAGAGAGGAGGGTTCAAACTGAAATTTCCGAGCTCGAATCAGGAAAGTTCAAGATAACAGGGTGTGAATTTGACCAGGAGCTTCCCTTGTTGCTCAGACCTAAGAGGAATAAAACCGAGAAGTACTTCAGCTATGGATCTCCTGCTTCAAGAACTTCCCCCATTGAAGTCCAGGATCTTAGTGTAACATACATGGGGGACAGAACAATAGCGGTGAGCATGACATGCTGCAAAAGAGCAGATTCAATGGTTAAACTCTGTGAAGTTTTTGAATCACTGAAGCTCAAGATCATCACTGCCAATATTTCTGCTGTCTCTGGAAGGCTTTTGAAGACTGTCTTCATTGAGGCTGAGAAAGAGGAGAGGGATTACTTGAAAATTAAAATAGAAACAGCAATTGCAGGTCTTAATGATCCACATAGCCCCATGAGTATCTGA | 735 | 44.08 | MDSFGNDCMNYFGSDIFIPTEELDSWGFDEPVSGYYDSSSPEGVLSSSSATKNIASERNRRRKLNERLFALRSVVPNITKMDKASIIKDAIDYIQDLHEQERRVQTEISELESGKFKITGCEFDQELPLLLRPKRNKTEKYFSYGSPASRTSPIEVQDLSVTYMGDRTIAVSMTCCKRADSMVKLCEVFESLKLKIITANISAVSGRLLKTVFIEAEKEERDYLKIKIETAIAGLNDPHSPMSI | 244 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 1713555 | 1716712 | + | CmaCh10G003720.1 | Cma10g00372 | 301688 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma10g00372 | 244 | Gene3D | - | 46 | 114 | IPR036638 | GO:0046983 | |
Cma10g00372 | 244 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 52 | 113 | IPR036638 | GO:0046983 | |
Cma10g00372 | 244 | PANTHER | TRANSCRIPTION FACTOR BHLH35 | 8 | 238 | - | - | |
Cma10g00372 | 244 | Coils | Coil | 94 | 114 | - | - | |
Cma10g00372 | 244 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 48 | 97 | IPR011598 | GO:0046983 | |
Cma10g00372 | 244 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 8 | 238 | - | - | |
Cma10g00372 | 244 | SMART | finulus | 54 | 103 | IPR011598 | GO:0046983 | |
Cma10g00372 | 244 | Pfam | Helix-loop-helix DNA-binding domain | 52 | 97 | IPR011598 | GO:0046983 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma10g00372 | Cma12g00915 | CCT | |
Cma05g00719 | Cma10g00372 | CCT | |
Cma10g00372 | Cma11g00359 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma10g00372 | Cma-Chr10:1713555 | Cma19g00746 | Cma-Chr19:7435816 | 9.23E-22 | dispersed | |
Cma10g00372 | Cma-Chr10:1713555 | Cma11g00359 | Cma-Chr11:1786261 | 3.27E-124 | wgd | |
Cma10g00372 | Cma-Chr10:1713555 | Cma12g00915 | Cma-Chr12:7027138 | 4.05E-62 | wgd | |
Cma10g00372 | Cma-Chr10:1713555 | Cma05g00719 | Cma-Chr5:3861355 | 5.98E-76 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35712 | PF00010 | HLH | 2.80E-12 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma10g00372 | - | - | cmo:103494233 | 369.007 |