Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00372 ATGGATAGTTTCGGAAACGATTGCATGAATTACTTCGGGAGTGATATCTTCATACCAACGGAAGAGCTCGACAGTTGGGGATTCGACGAGCCGGTTTCCGGATACTACGATTCGAGTTCGCCGGAGGGAGTTCTGTCGTCGTCGTCGGCGACGAAGAACATAGCATCGGAGAGGAATAGGAGAAGGAAGCTTAACGAGAGGCTTTTTGCGCTCCGATCGGTCGTTCCTAATATAACTAAGATGGATAAGGCTTCCATTATAAAAGATGCAATCGATTACATCCAAGATTTACATGAGCAAGAGAGGAGGGTTCAAACTGAAATTTCCGAGCTCGAATCAGGAAAGTTCAAGATAACAGGGTGTGAATTTGACCAGGAGCTTCCCTTGTTGCTCAGACCTAAGAGGAATAAAACCGAGAAGTACTTCAGCTATGGATCTCCTGCTTCAAGAACTTCCCCCATTGAAGTCCAGGATCTTAGTGTAACATACATGGGGGACAGAACAATAGCGGTGAGCATGACATGCTGCAAAAGAGCAGATTCAATGGTTAAACTCTGTGAAGTTTTTGAATCACTGAAGCTCAAGATCATCACTGCCAATATTTCTGCTGTCTCTGGAAGGCTTTTGAAGACTGTCTTCATTGAGGCTGAGAAAGAGGAGAGGGATTACTTGAAAATTAAAATAGAAACAGCAATTGCAGGTCTTAATGATCCACATAGCCCCATGAGTATCTGA 735 44.08 MDSFGNDCMNYFGSDIFIPTEELDSWGFDEPVSGYYDSSSPEGVLSSSSATKNIASERNRRRKLNERLFALRSVVPNITKMDKASIIKDAIDYIQDLHEQERRVQTEISELESGKFKITGCEFDQELPLLLRPKRNKTEKYFSYGSPASRTSPIEVQDLSVTYMGDRTIAVSMTCCKRADSMVKLCEVFESLKLKIITANISAVSGRLLKTVFIEAEKEERDYLKIKIETAIAGLNDPHSPMSI 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1713555 1716712 + CmaCh10G003720.1 Cma10g00372 301688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00372 244 Gene3D - 46 114 IPR036638 GO:0046983
Cma10g00372 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 52 113 IPR036638 GO:0046983
Cma10g00372 244 PANTHER TRANSCRIPTION FACTOR BHLH35 8 238 - -
Cma10g00372 244 Coils Coil 94 114 - -
Cma10g00372 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Cma10g00372 244 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 8 238 - -
Cma10g00372 244 SMART finulus 54 103 IPR011598 GO:0046983
Cma10g00372 244 Pfam Helix-loop-helix DNA-binding domain 52 97 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00372 Cma12g00915 CCT
Cma05g00719 Cma10g00372 CCT
Cma10g00372 Cma11g00359 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00372 Cma-Chr10:1713555 Cma19g00746 Cma-Chr19:7435816 9.23E-22 dispersed
Cma10g00372 Cma-Chr10:1713555 Cma11g00359 Cma-Chr11:1786261 3.27E-124 wgd
Cma10g00372 Cma-Chr10:1713555 Cma12g00915 Cma-Chr12:7027138 4.05E-62 wgd
Cma10g00372 Cma-Chr10:1713555 Cma05g00719 Cma-Chr5:3861355 5.98E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35712 PF00010 HLH 2.80E-12 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00372 - - cmo:103494233 369.007