Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00384 ATGGCGGCGGCGGCGGCGGCGGAGGCGCCCGGAAACAATGGTGGCGCGTTGCAGAAGAGTTACTTTGATGTGTTGGGGATTTGCTGTTCTTCAGAAATTCCTCTGATTGAGAATATATTGAAGGAAATCGAAGGGATTAAAGAGATTAAAGTGATTGTCGCTACAAGAACTCTCATTGTTCTTCATCATAATCTCCTCGTTTCTCAAGCACAAATTGTTAAAGCCCTAAATCAAGCAAGACTTGAAGCGAACGTTAGAGCATATGGAGACCAGCAGAAAAATCACCGGAAAAAATGGCCCAGCCCTTATGCGGTGGCGAGTGGGCTGTTGCTGCTGCTTTCGTTTCTCAAATATGTGAATCCTGTTTTCAAATGGGTGGCTTTGGCTGCCGTCGCCGCCGGTATCTGGCCCATTGCCCTCAAAAGCTTCACCGCCGTTCGCCATCTTAGAATCGACATCAACATTCTTGCTTTAATCGCCGTGATCGGGACAATTGTGCTGAATGATTATTTGGAAGCGGCCACCATCGTCTTCCTCTTCACAATCGCCGAATGGCTCGAATCCAGAGCCGGCCACAAGGCCAACGCCGTCATGTCGTCCCTTCTAAGCATCGCCCCTCAGAAAGCGGTTTTAGCCGACACCGGCGAAGTTGTCGGCGCCGACGAGGTCAAAATGGGGACTCTGCTGGCGGTGAAGGCTGGTGAGGACATACCCATTGATGGAATCGTTGTGGAGGGAAAATGCGAAGTGGATGAGAAAACCCTTACAGGTGAATCTTTCCCTGTTGCCAAACAGAAGGATTCCACTGTTTGGGCTGGTACCATTAATTTAAACGGCTATGTTACTGTAAAAACTACTGCTCTTGCTGAAGATTGTGTGGTGGCTAAAATGGCTAAGCTGGTTGAAGAGGCTCAGAATAGTAAATCTAGAACTCAAAGGTTCATTGACAAATGTGCTAAATTCTATACTCCAGCTGTTATAATCATATCAACTGGCATAGCGGTGATTCCATTTGCTTTGAGACTGCACAATCGCAGCCATTGGTTTCACTTGGCACTGGTTGTGCTAGTGAGCGCGTGTCCCTGTGCACTCATCCTTTCGACCCCTGTTGCGTCTTTCTGTGCACTTACCAAGGCAGCGACCTCTGGCCTCTTGATCAAAGGAGGTGACTGCCTTGAAACTCTTGGCAAAATTAAGATCATGGCCTTTGATAAAACTGGGACAATAACAAGGGGGGAATTTATGGTCACTGAATTTCAAGCTCTTGATAAGGAAAATATAAGCTTAGACACATTGCTATACTGGGTGTCAAGCATTGAGAGCAAGTCCAGTCATCCAATGGCAGCTGCACTTGTCGACCATGGAAGATCACTATCCATTAACCCCAAACCTGAAAATGTGGATGACTTTCAAAATTTCCCTGGAGAAGGTGTCCATGGGAGAATTGATGGGAAAGACATCTACATTGGAAATCGAAAAATTGCTACAAGAGCCAATTGTGCAACAGTCCCAGAGATCAAAGATGAAGCAAAGGATGGAAGGACTCTTGGATACGTTTTCTGTGGAACTACTGCAGCTGGTATCTTTACTCTATCTGATTCTTGTAGAACTGGAGCTAAGGAGGCCATGGCTGAGATCCGATCTCTCGGTATAAAAACAACCATGCTCACTGGAGACAGTTCTGCAGCAGCCTTGCAAGCACAAAAAGAATTGGGAAAGGCTTTAGAAACCGTTCATGCAGAACTTCTACCTGAAGACAAGACAAGACTCATCAATGACTTCAAAAGGGAGGGACCAACAGCCATGATTGGAGATGGTTTAAACGACGCCCCTGCCTTGGCGACAGCCGATATTGGTATATCAATGGGAATCTCTGGTTCAGCTCTCGCAATAGAAACTGGAGATGTAATTCTAATGACTAATGACATAAGGAAAATTCCGAAAGCCATTCGACTCGCAAGAAGAGCTAATAGGAAAGTAATCGAAAATGTGATTCTGTCGGTCGCTCCTAGGACTGCTATACTCGGCCTGGCATTTGGTGGTCATCCACTTGTTTGGGCAGCTGTTCTTGCTGATGTTGGTGCCTGTGTGCTAGTTATCCTTAACAGTATGCTCCTGCTGCGAGGAACTGAAGGACACAAAGGGAAAAAGGCTGGCATGTTTTCTGCTTCTCACTGTTCCTCCAAACATAAATGTTGTCATGTTGGTAGCCATTCAGAAGAACATGGTGGTCACACCCATGATCACGGCTGCAGCAATGAAAGTTCCCACTCTTCTAGTCATCATCAACACCACCATCACCATCACCATCACCATGAGCATGAGGACTGCGGCTCTCTCAAGAAAACTCATAATGGTTGCTCAACTCAGAAATGTGCTTCTACGTGTGATTCTGGGATGAAAAAATCGAGTTCATGCAAGAAAAGTAAACTCGTGGACTCATGTTCTAGGGCGGATGATCCGGCAGGCAGTGTAAAACCCTTTGAACATGAGCATTGCGTCCATAACAACCAGCCCAACGAACATGAACATTGCGTCCATAACAACCATCCCGATGAACATGAACAGTGCGTCCATAACAACCATCCCGATGAACATGAACACTGCGTCCATAACAACCAGCCCGATGAACATGAACATTGCGTCCATAACAACCATCCCGATGAACATGGACACTGCATCCATAACAACCAGCCTGATGAACATGAACATCATACCCATTTTTCATGTGATGATCATCATGTCGAGGACGAACATTGCTCTCTGAAGAATACACTAGAGTTTTGCTCGTTTCCGAGATGTGCATCAAATTCATGTGAGAAAATCCAGTGCACAAGCTCACCCGCCAACCTTGATGGATCTGCAGGCAGTGATGAGCTCCATGAAAGAGGATGTTGTACTCATAATACCCAATCTGCTCAACATGATCATGAAATCCAAACTCTCAAATGTGATTTGGATGACAGCCACTCATCCAGTCCTGATCATCATAATGGTAATGGCTGTTGCTCTCAAAAGAACGCTCAGAAGGTTTCTTTATCTCATTCAATGTGTCATTCTGAGACCTGCAATTCAAGTCCTTGTGGGAAAACCAAATGTGTGGATTCAACTGAGAAGCAACACACGCCTAAAGGCAGTCTAGAACTCCTCCAAGACCATAACCATTGCCACCAAGGAAGCTGCGACACTTCCAATTTCGTCTCGGAATCCCAGGAAAACCACAGGAAAAACTGCAGTGGACCTTGTAAATCAAGACCAATAAGCAGGTGCACAGAAGATGAATGCACGGAAAGGGCTGAAATGATAGTTGATTGTGCTGAAGGAAACGAGCACCACAAGATGAAACAACATCATTGCCATACTCATTTGAGTCTTGAAAATGAAGGAGTTCATCCTCATTGCAAGGCATCAAAAGGAGATAACGATGGAGCAATCAACAAAACCACAAAAATCGAGCTCGAAGCAGCAGACCATTCGAACCCAAAACATGGCAACACTTGTAAGGCTTTGGAAAACAGAGAGACAAACAACAACTGTAAAACCTGCAGAAGAGGAAGCTCGCAACTCAAAATTGGCGAAACTTGTGTAGGCTTGAAGAAGAACAGAGAAATACGTGGGTGTTGTAAGAGCTACATGAGGGAGTGCTGCAGGAAGCATGGTGATATCAGAATGGCAGTCCGAGGAGGCTTAAACGAAATCATCATAGAATAG 3711 45.57 MAAAAAAEAPGNNGGALQKSYFDVLGICCSSEIPLIENILKEIEGIKEIKVIVATRTLIVLHHNLLVSQAQIVKALNQARLEANVRAYGDQQKNHRKKWPSPYAVASGLLLLLSFLKYVNPVFKWVALAAVAAGIWPIALKSFTAVRHLRIDINILALIAVIGTIVLNDYLEAATIVFLFTIAEWLESRAGHKANAVMSSLLSIAPQKAVLADTGEVVGADEVKMGTLLAVKAGEDIPIDGIVVEGKCEVDEKTLTGESFPVAKQKDSTVWAGTINLNGYVTVKTTALAEDCVVAKMAKLVEEAQNSKSRTQRFIDKCAKFYTPAVIIISTGIAVIPFALRLHNRSHWFHLALVVLVSACPCALILSTPVASFCALTKAATSGLLIKGGDCLETLGKIKIMAFDKTGTITRGEFMVTEFQALDKENISLDTLLYWVSSIESKSSHPMAAALVDHGRSLSINPKPENVDDFQNFPGEGVHGRIDGKDIYIGNRKIATRANCATVPEIKDEAKDGRTLGYVFCGTTAAGIFTLSDSCRTGAKEAMAEIRSLGIKTTMLTGDSSAAALQAQKELGKALETVHAELLPEDKTRLINDFKREGPTAMIGDGLNDAPALATADIGISMGISGSALAIETGDVILMTNDIRKIPKAIRLARRANRKVIENVILSVAPRTAILGLAFGGHPLVWAAVLADVGACVLVILNSMLLLRGTEGHKGKKAGMFSASHCSSKHKCCHVGSHSEEHGGHTHDHGCSNESSHSSSHHQHHHHHHHHHEHEDCGSLKKTHNGCSTQKCASTCDSGMKKSSSCKKSKLVDSCSRADDPAGSVKPFEHEHCVHNNQPNEHEHCVHNNHPDEHEQCVHNNHPDEHEHCVHNNQPDEHEHCVHNNHPDEHGHCIHNNQPDEHEHHTHFSCDDHHVEDEHCSLKNTLEFCSFPRCASNSCEKIQCTSSPANLDGSAGSDELHERGCCTHNTQSAQHDHEIQTLKCDLDDSHSSSPDHHNGNGCCSQKNAQKVSLSHSMCHSETCNSSPCGKTKCVDSTEKQHTPKGSLELLQDHNHCHQGSCDTSNFVSESQENHRKNCSGPCKSRPISRCTEDECTERAEMIVDCAEGNEHHKMKQHHCHTHLSLENEGVHPHCKASKGDNDGAINKTTKIELEAADHSNPKHGNTCKALENRETNNNCKTCRRGSSQLKIGETCVGLKKNREIRGCCKSYMRECCRKHGDIRMAVRGGLNEIIIE 1236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1763343 1769201 - CmaCh10G003840.1 Cma10g00384 301700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00384 1236 SFLD p-type atpase 385 655 IPR044492 -
Cma10g00384 1236 SUPERFAMILY Calcium ATPase, transduction domain A 216 301 IPR008250 -
Cma10g00384 1236 ProSitePatterns Hypothetical cof family signature 2. 603 625 - -
Cma10g00384 1236 Gene3D - 15 87 - -
Cma10g00384 1236 Gene3D - 393 654 IPR023214 -
Cma10g00384 1236 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 176 679 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma10g00384 1236 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 16 1217 - -
Cma10g00384 1236 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 153 706 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cma10g00384 1236 SUPERFAMILY HAD-like 402 704 IPR036412 -
Cma10g00384 1236 ProSiteProfiles Heavy-metal-associated domain profile. 19 85 IPR006121 GO:0046872
Cma10g00384 1236 SFLD C1.7: P-type atpase like 385 655 - -
Cma10g00384 1236 SUPERFAMILY HMA, heavy metal-associated domain 16 88 IPR036163 GO:0046872
Cma10g00384 1236 ProSitePatterns E1-E2 ATPases phosphorylation site. 404 410 IPR018303 -
Cma10g00384 1236 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA4-RELATED 16 1217 - -
Cma10g00384 1236 MobiDBLite consensus disorder prediction 737 780 - -
Cma10g00384 1236 Gene3D - 191 305 - -
Cma10g00384 1236 TIGRFAM ATPase-IB2_Cd: cadmium-translocating P-type ATPase 153 496 - -
Cma10g00384 1236 Pfam haloacid dehalogenase-like hydrolase 398 617 - -
Cma10g00384 1236 SUPERFAMILY Calcium ATPase, transmembrane domain M 153 396 IPR023298 -
Cma10g00384 1236 PRINTS H+-transporting ATPase (proton pump) signature 603 619 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma10g00384 1236 PRINTS H+-transporting ATPase (proton pump) signature 635 660 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma10g00384 1236 Pfam E1-E2 ATPase 212 380 - -
Cma10g00384 1236 MobiDBLite consensus disorder prediction 737 759 - -
Cma10g00384 1236 Gene3D - 413 535 IPR023299 GO:0000166
Cma10g00384 1236 PRINTS P-type cation-transporting ATPase superfamily signature 251 265 - -
Cma10g00384 1236 PRINTS P-type cation-transporting ATPase superfamily signature 402 416 - -
Cma10g00384 1236 PRINTS P-type cation-transporting ATPase superfamily signature 549 559 - -
Cma10g00384 1236 PRINTS P-type cation-transporting ATPase superfamily signature 603 622 - -
Cma10g00384 1236 PRINTS P-type cation-transporting ATPase superfamily signature 627 639 - -
Cma10g00384 1236 CDD P-type_ATPase_HM 103 705 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00708 Cma10g00384 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00708 Cma-Chr5:3753976 Cma10g00384 Cma-Chr10:1763343 0 dispersed
Cma10g00384 Cma-Chr10:1763343 Cma16g00254 Cma-Chr16:1185501 2.67E-62 dispersed
Cma02g00472 Cma-Chr2:2473800 Cma10g00384 Cma-Chr10:1763343 1.66E-61 transposed
Cma02g00493 Cma-Chr2:2627161 Cma10g00384 Cma-Chr10:1763343 1.76E-58 transposed
Cma10g00384 Cma-Chr10:1763343 Cma05g00706 Cma-Chr5:3727040 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00384 K01534 - gmx:100817567 1103.2