Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma10g00384 | ATGGCGGCGGCGGCGGCGGCGGAGGCGCCCGGAAACAATGGTGGCGCGTTGCAGAAGAGTTACTTTGATGTGTTGGGGATTTGCTGTTCTTCAGAAATTCCTCTGATTGAGAATATATTGAAGGAAATCGAAGGGATTAAAGAGATTAAAGTGATTGTCGCTACAAGAACTCTCATTGTTCTTCATCATAATCTCCTCGTTTCTCAAGCACAAATTGTTAAAGCCCTAAATCAAGCAAGACTTGAAGCGAACGTTAGAGCATATGGAGACCAGCAGAAAAATCACCGGAAAAAATGGCCCAGCCCTTATGCGGTGGCGAGTGGGCTGTTGCTGCTGCTTTCGTTTCTCAAATATGTGAATCCTGTTTTCAAATGGGTGGCTTTGGCTGCCGTCGCCGCCGGTATCTGGCCCATTGCCCTCAAAAGCTTCACCGCCGTTCGCCATCTTAGAATCGACATCAACATTCTTGCTTTAATCGCCGTGATCGGGACAATTGTGCTGAATGATTATTTGGAAGCGGCCACCATCGTCTTCCTCTTCACAATCGCCGAATGGCTCGAATCCAGAGCCGGCCACAAGGCCAACGCCGTCATGTCGTCCCTTCTAAGCATCGCCCCTCAGAAAGCGGTTTTAGCCGACACCGGCGAAGTTGTCGGCGCCGACGAGGTCAAAATGGGGACTCTGCTGGCGGTGAAGGCTGGTGAGGACATACCCATTGATGGAATCGTTGTGGAGGGAAAATGCGAAGTGGATGAGAAAACCCTTACAGGTGAATCTTTCCCTGTTGCCAAACAGAAGGATTCCACTGTTTGGGCTGGTACCATTAATTTAAACGGCTATGTTACTGTAAAAACTACTGCTCTTGCTGAAGATTGTGTGGTGGCTAAAATGGCTAAGCTGGTTGAAGAGGCTCAGAATAGTAAATCTAGAACTCAAAGGTTCATTGACAAATGTGCTAAATTCTATACTCCAGCTGTTATAATCATATCAACTGGCATAGCGGTGATTCCATTTGCTTTGAGACTGCACAATCGCAGCCATTGGTTTCACTTGGCACTGGTTGTGCTAGTGAGCGCGTGTCCCTGTGCACTCATCCTTTCGACCCCTGTTGCGTCTTTCTGTGCACTTACCAAGGCAGCGACCTCTGGCCTCTTGATCAAAGGAGGTGACTGCCTTGAAACTCTTGGCAAAATTAAGATCATGGCCTTTGATAAAACTGGGACAATAACAAGGGGGGAATTTATGGTCACTGAATTTCAAGCTCTTGATAAGGAAAATATAAGCTTAGACACATTGCTATACTGGGTGTCAAGCATTGAGAGCAAGTCCAGTCATCCAATGGCAGCTGCACTTGTCGACCATGGAAGATCACTATCCATTAACCCCAAACCTGAAAATGTGGATGACTTTCAAAATTTCCCTGGAGAAGGTGTCCATGGGAGAATTGATGGGAAAGACATCTACATTGGAAATCGAAAAATTGCTACAAGAGCCAATTGTGCAACAGTCCCAGAGATCAAAGATGAAGCAAAGGATGGAAGGACTCTTGGATACGTTTTCTGTGGAACTACTGCAGCTGGTATCTTTACTCTATCTGATTCTTGTAGAACTGGAGCTAAGGAGGCCATGGCTGAGATCCGATCTCTCGGTATAAAAACAACCATGCTCACTGGAGACAGTTCTGCAGCAGCCTTGCAAGCACAAAAAGAATTGGGAAAGGCTTTAGAAACCGTTCATGCAGAACTTCTACCTGAAGACAAGACAAGACTCATCAATGACTTCAAAAGGGAGGGACCAACAGCCATGATTGGAGATGGTTTAAACGACGCCCCTGCCTTGGCGACAGCCGATATTGGTATATCAATGGGAATCTCTGGTTCAGCTCTCGCAATAGAAACTGGAGATGTAATTCTAATGACTAATGACATAAGGAAAATTCCGAAAGCCATTCGACTCGCAAGAAGAGCTAATAGGAAAGTAATCGAAAATGTGATTCTGTCGGTCGCTCCTAGGACTGCTATACTCGGCCTGGCATTTGGTGGTCATCCACTTGTTTGGGCAGCTGTTCTTGCTGATGTTGGTGCCTGTGTGCTAGTTATCCTTAACAGTATGCTCCTGCTGCGAGGAACTGAAGGACACAAAGGGAAAAAGGCTGGCATGTTTTCTGCTTCTCACTGTTCCTCCAAACATAAATGTTGTCATGTTGGTAGCCATTCAGAAGAACATGGTGGTCACACCCATGATCACGGCTGCAGCAATGAAAGTTCCCACTCTTCTAGTCATCATCAACACCACCATCACCATCACCATCACCATGAGCATGAGGACTGCGGCTCTCTCAAGAAAACTCATAATGGTTGCTCAACTCAGAAATGTGCTTCTACGTGTGATTCTGGGATGAAAAAATCGAGTTCATGCAAGAAAAGTAAACTCGTGGACTCATGTTCTAGGGCGGATGATCCGGCAGGCAGTGTAAAACCCTTTGAACATGAGCATTGCGTCCATAACAACCAGCCCAACGAACATGAACATTGCGTCCATAACAACCATCCCGATGAACATGAACAGTGCGTCCATAACAACCATCCCGATGAACATGAACACTGCGTCCATAACAACCAGCCCGATGAACATGAACATTGCGTCCATAACAACCATCCCGATGAACATGGACACTGCATCCATAACAACCAGCCTGATGAACATGAACATCATACCCATTTTTCATGTGATGATCATCATGTCGAGGACGAACATTGCTCTCTGAAGAATACACTAGAGTTTTGCTCGTTTCCGAGATGTGCATCAAATTCATGTGAGAAAATCCAGTGCACAAGCTCACCCGCCAACCTTGATGGATCTGCAGGCAGTGATGAGCTCCATGAAAGAGGATGTTGTACTCATAATACCCAATCTGCTCAACATGATCATGAAATCCAAACTCTCAAATGTGATTTGGATGACAGCCACTCATCCAGTCCTGATCATCATAATGGTAATGGCTGTTGCTCTCAAAAGAACGCTCAGAAGGTTTCTTTATCTCATTCAATGTGTCATTCTGAGACCTGCAATTCAAGTCCTTGTGGGAAAACCAAATGTGTGGATTCAACTGAGAAGCAACACACGCCTAAAGGCAGTCTAGAACTCCTCCAAGACCATAACCATTGCCACCAAGGAAGCTGCGACACTTCCAATTTCGTCTCGGAATCCCAGGAAAACCACAGGAAAAACTGCAGTGGACCTTGTAAATCAAGACCAATAAGCAGGTGCACAGAAGATGAATGCACGGAAAGGGCTGAAATGATAGTTGATTGTGCTGAAGGAAACGAGCACCACAAGATGAAACAACATCATTGCCATACTCATTTGAGTCTTGAAAATGAAGGAGTTCATCCTCATTGCAAGGCATCAAAAGGAGATAACGATGGAGCAATCAACAAAACCACAAAAATCGAGCTCGAAGCAGCAGACCATTCGAACCCAAAACATGGCAACACTTGTAAGGCTTTGGAAAACAGAGAGACAAACAACAACTGTAAAACCTGCAGAAGAGGAAGCTCGCAACTCAAAATTGGCGAAACTTGTGTAGGCTTGAAGAAGAACAGAGAAATACGTGGGTGTTGTAAGAGCTACATGAGGGAGTGCTGCAGGAAGCATGGTGATATCAGAATGGCAGTCCGAGGAGGCTTAAACGAAATCATCATAGAATAG | 3711 | 45.57 | MAAAAAAEAPGNNGGALQKSYFDVLGICCSSEIPLIENILKEIEGIKEIKVIVATRTLIVLHHNLLVSQAQIVKALNQARLEANVRAYGDQQKNHRKKWPSPYAVASGLLLLLSFLKYVNPVFKWVALAAVAAGIWPIALKSFTAVRHLRIDINILALIAVIGTIVLNDYLEAATIVFLFTIAEWLESRAGHKANAVMSSLLSIAPQKAVLADTGEVVGADEVKMGTLLAVKAGEDIPIDGIVVEGKCEVDEKTLTGESFPVAKQKDSTVWAGTINLNGYVTVKTTALAEDCVVAKMAKLVEEAQNSKSRTQRFIDKCAKFYTPAVIIISTGIAVIPFALRLHNRSHWFHLALVVLVSACPCALILSTPVASFCALTKAATSGLLIKGGDCLETLGKIKIMAFDKTGTITRGEFMVTEFQALDKENISLDTLLYWVSSIESKSSHPMAAALVDHGRSLSINPKPENVDDFQNFPGEGVHGRIDGKDIYIGNRKIATRANCATVPEIKDEAKDGRTLGYVFCGTTAAGIFTLSDSCRTGAKEAMAEIRSLGIKTTMLTGDSSAAALQAQKELGKALETVHAELLPEDKTRLINDFKREGPTAMIGDGLNDAPALATADIGISMGISGSALAIETGDVILMTNDIRKIPKAIRLARRANRKVIENVILSVAPRTAILGLAFGGHPLVWAAVLADVGACVLVILNSMLLLRGTEGHKGKKAGMFSASHCSSKHKCCHVGSHSEEHGGHTHDHGCSNESSHSSSHHQHHHHHHHHHEHEDCGSLKKTHNGCSTQKCASTCDSGMKKSSSCKKSKLVDSCSRADDPAGSVKPFEHEHCVHNNQPNEHEHCVHNNHPDEHEQCVHNNHPDEHEHCVHNNQPDEHEHCVHNNHPDEHGHCIHNNQPDEHEHHTHFSCDDHHVEDEHCSLKNTLEFCSFPRCASNSCEKIQCTSSPANLDGSAGSDELHERGCCTHNTQSAQHDHEIQTLKCDLDDSHSSSPDHHNGNGCCSQKNAQKVSLSHSMCHSETCNSSPCGKTKCVDSTEKQHTPKGSLELLQDHNHCHQGSCDTSNFVSESQENHRKNCSGPCKSRPISRCTEDECTERAEMIVDCAEGNEHHKMKQHHCHTHLSLENEGVHPHCKASKGDNDGAINKTTKIELEAADHSNPKHGNTCKALENRETNNNCKTCRRGSSQLKIGETCVGLKKNREIRGCCKSYMRECCRKHGDIRMAVRGGLNEIIIE | 1236 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 1763343 | 1769201 | - | CmaCh10G003840.1 | Cma10g00384 | 301700 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma10g00384 | 1236 | SFLD | p-type atpase | 385 | 655 | IPR044492 | - | |
Cma10g00384 | 1236 | SUPERFAMILY | Calcium ATPase, transduction domain A | 216 | 301 | IPR008250 | - | |
Cma10g00384 | 1236 | ProSitePatterns | Hypothetical cof family signature 2. | 603 | 625 | - | - | |
Cma10g00384 | 1236 | Gene3D | - | 15 | 87 | - | - | |
Cma10g00384 | 1236 | Gene3D | - | 393 | 654 | IPR023214 | - | |
Cma10g00384 | 1236 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 176 | 679 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cma10g00384 | 1236 | PANTHER | CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED | 16 | 1217 | - | - | |
Cma10g00384 | 1236 | TIGRFAM | ATPase-IB_hvy: heavy metal translocating P-type ATPase | 153 | 706 | IPR027256 | GO:0006812|GO:0016021|GO:0019829 | |
Cma10g00384 | 1236 | SUPERFAMILY | HAD-like | 402 | 704 | IPR036412 | - | |
Cma10g00384 | 1236 | ProSiteProfiles | Heavy-metal-associated domain profile. | 19 | 85 | IPR006121 | GO:0046872 | |
Cma10g00384 | 1236 | SFLD | C1.7: P-type atpase like | 385 | 655 | - | - | |
Cma10g00384 | 1236 | SUPERFAMILY | HMA, heavy metal-associated domain | 16 | 88 | IPR036163 | GO:0046872 | |
Cma10g00384 | 1236 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 404 | 410 | IPR018303 | - | |
Cma10g00384 | 1236 | PANTHER | CADMIUM/ZINC-TRANSPORTING ATPASE HMA4-RELATED | 16 | 1217 | - | - | |
Cma10g00384 | 1236 | MobiDBLite | consensus disorder prediction | 737 | 780 | - | - | |
Cma10g00384 | 1236 | Gene3D | - | 191 | 305 | - | - | |
Cma10g00384 | 1236 | TIGRFAM | ATPase-IB2_Cd: cadmium-translocating P-type ATPase | 153 | 496 | - | - | |
Cma10g00384 | 1236 | Pfam | haloacid dehalogenase-like hydrolase | 398 | 617 | - | - | |
Cma10g00384 | 1236 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 153 | 396 | IPR023298 | - | |
Cma10g00384 | 1236 | PRINTS | H+-transporting ATPase (proton pump) signature | 603 | 619 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cma10g00384 | 1236 | PRINTS | H+-transporting ATPase (proton pump) signature | 635 | 660 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cma10g00384 | 1236 | Pfam | E1-E2 ATPase | 212 | 380 | - | - | |
Cma10g00384 | 1236 | MobiDBLite | consensus disorder prediction | 737 | 759 | - | - | |
Cma10g00384 | 1236 | Gene3D | - | 413 | 535 | IPR023299 | GO:0000166 | |
Cma10g00384 | 1236 | PRINTS | P-type cation-transporting ATPase superfamily signature | 251 | 265 | - | - | |
Cma10g00384 | 1236 | PRINTS | P-type cation-transporting ATPase superfamily signature | 402 | 416 | - | - | |
Cma10g00384 | 1236 | PRINTS | P-type cation-transporting ATPase superfamily signature | 549 | 559 | - | - | |
Cma10g00384 | 1236 | PRINTS | P-type cation-transporting ATPase superfamily signature | 603 | 622 | - | - | |
Cma10g00384 | 1236 | PRINTS | P-type cation-transporting ATPase superfamily signature | 627 | 639 | - | - | |
Cma10g00384 | 1236 | CDD | P-type_ATPase_HM | 103 | 705 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma05g00708 | Cma10g00384 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma05g00708 | Cma-Chr5:3753976 | Cma10g00384 | Cma-Chr10:1763343 | 0 | dispersed | |
Cma10g00384 | Cma-Chr10:1763343 | Cma16g00254 | Cma-Chr16:1185501 | 2.67E-62 | dispersed | |
Cma02g00472 | Cma-Chr2:2473800 | Cma10g00384 | Cma-Chr10:1763343 | 1.66E-61 | transposed | |
Cma02g00493 | Cma-Chr2:2627161 | Cma10g00384 | Cma-Chr10:1763343 | 1.76E-58 | transposed | |
Cma10g00384 | Cma-Chr10:1763343 | Cma05g00706 | Cma-Chr5:3727040 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma10g00384 | K01534 | - | gmx:100817567 | 1103.2 |