Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00392 ATGGAAATACTCAAGGATGTTCTAGGAAGGAGTGGTCGATTGAAGTCTAGCGCCAAAGATCGAGAAACTGGGTTGGGAGGAGAGGAACGGCGACATGGCAAAACATCCAAGAAGAGAAGTGCTGAGAGGCAAGATGCTGATTGTGCAGCCAATGGTATCTCAGACAAGGATTTTGAGTATTATGTAAAATTGATTAGATGGCTAGAATGCGAGGGGCACATAGAGAAGAACTTCAGACAAAAATTCTTAACCTGGTACAGCTTGAGAGCCACAGCACAGGATATTAGGATTGTGAAGGCCTTTGTTGATAACTTCATTGAAGATCCATCAGCCCTTGCAGAGCAACTTGTGGATACCTTTTCAGAATGCATTTCAATCAAGAAAACATGTGCTGTGCCTGCTGGATTCTGCATGAAGCTTTGGCATTGA 429 43.59 MEILKDVLGRSGRLKSSAKDRETGLGGEERRHGKTSKKRSAERQDADCAANGISDKDFEYYVKLIRWLECEGHIEKNFRQKFLTWYSLRATAQDIRIVKAFVDNFIEDPSALAEQLVDTFSECISIKKTCAVPAGFCMKLWH 142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1816786 1817214 - CmaCh10G003920.1 Cma10g00392 301708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00392 142 PANTHER VIN3-LIKE PROTEIN 2-RELATED 1 142 - -
Cma10g00392 142 MobiDBLite consensus disorder prediction 1 45 - -
Cma10g00392 142 PANTHER VIN3-LIKE PROTEIN 2-RELATED 1 142 IPR044514 GO:0010048|GO:0040029
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00392 Cma11g00387 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00392 Cma-Chr10:1816786 Cma11g00597 Cma-Chr11:2853975 2.67E-30 dispersed
Cma10g00392 Cma-Chr10:1816786 Cma11g00387 Cma-Chr11:1918549 1.74E-81 wgd
Cma10g00392 Cma-Chr10:1816786 Cma05g00690 Cma-Chr5:3595253 3.47E-65 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00392 - - csv:101220456 259.996