Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00401 ATGGCGGCTGCTGATCCCTCACCGGAATTCATATTCCGGTCAAAGCTCCCGGACCTCACCATCCCCAACCACCTCCCCTTGCACACATATTGCTTCGAAAGAATCTCCGAATTCAAACACAATCCATGTCTAATCAATGCCGCCACCGGTGACATTTACACTTACGGTGAAGTCCACGTAACAGCTCGCCGAGTAGCCGCCGGCCTTCATAAGCTCGGCATCGGAAAAGGGGACGTCATCATGCTCCTTCTCCAAAACACTCCACAATTCGCTTTCGCTTTCCTCGGCGCTTCCTTTGCGTGCGCCATAGCCACCATGGCGAACCCGTTCTTCACGCCAGCGGAGATTGCGAAGCAAGCGGCGTCGTCTGGCGCCAAGCTGATCATAACCCAAGCCGCGTTTGCGGAAAAAGTGAAAAATTTGCCTCAGGAAAACCAGGGGATTTTGAAAGTGATATTCATCGACTCTCCACCGGAGGGTGGATGTCATTTTTCGTCGTTGACTGATGAAGCAAAAGAGGAGGAATTGACGGATGTGAAATTCAGCCCGGACGACGTCGTTGCGTTGCCATATTCGTCTGGCACAACAGGCCTCCCAAAAGGAGTTATGCTGACTCATAAGGGATTGGTGACCAGCGTGGCTCAACAAGTGGACGGCGAAAATCCACACTTCCATATCCGAAGTAACGACGTCGTTCTGTGTGTGCTTCCTTTGTTTCACATCTACTCGTTGAGTTCGATCGTGATGTCGTCGTTGCGAGTGGGAGCCGCGATTTTGCTCGTCCAGAAATTCGACATTAATTCCCTTGTGGCATTGGTTCCCAAATATAGGGTCACCATTGCTACCGTTGTACCTCCTATTGTACTCGCAATGGTCAAGAGTCCGGTTGTAGACTGTTCCGACATGTCATCCATACGGATCGTGTTGTCGGGAGCCGCACCGCTGGGGAAGAACCTTGAAGATGCCTTTAGAGCCAAGTTTCCCCATGCCATTCTCGGCCAAGGATACGGAATGACTGAGTCAGGATCAGTGTTGACAATGTCATTGGCACTTGCAAAGGAGAGATTCGCAATCAAGTCGGGAGCTTGTGGGACATTAATGAGAAATGCAGAAATGAAGATTGTAAACCCGGAAACTGGAGTTTCTCTTTCAAGAAATCAACCCGGAGAGATTTATGTTAGAAGTCCTCAAATGATGAAAGGGTACCTCAACGACGAAGAGGCCACGAAGGGCATAATCGACGGAGACGGATGGCTGCACACCGGCGACATAGGTTTAGTTGACGACGACGATGAGGTCTTCATCGTCGATCGTCTCAAGGAACTGATCAAATACAAAGGCTTCCAGGTAGCGCCGGCGGAGTTGGAAGGCCTGCTCATTTCCAACGTCCACATTGTCGACGTTGCGGTTATACCTATGAAAGATGAAGTAGCTGGAGAGGCTCCTGTTGCGTTCATTGTCCGGTCAGACGGTTCCAACATCACCGAGGATGAAATTAAGGAATACATCTCCAAACAGGTTGTGTTTTATAAGAGGATTAATCGCGTCTTCTTCGTGGATTCCATCCCTAAAAGTCCTTCTGGAAAAATCTTGCGGAGACAACTTAGAGCTCTGCTCCCCGCCAGTATTCCAAACTAG 1638 49.82 MAAADPSPEFIFRSKLPDLTIPNHLPLHTYCFERISEFKHNPCLINAATGDIYTYGEVHVTARRVAAGLHKLGIGKGDVIMLLLQNTPQFAFAFLGASFACAIATMANPFFTPAEIAKQAASSGAKLIITQAAFAEKVKNLPQENQGILKVIFIDSPPEGGCHFSSLTDEAKEEELTDVKFSPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPHFHIRSNDVVLCVLPLFHIYSLSSIVMSSLRVGAAILLVQKFDINSLVALVPKYRVTIATVVPPIVLAMVKSPVVDCSDMSSIRIVLSGAAPLGKNLEDAFRAKFPHAILGQGYGMTESGSVLTMSLALAKERFAIKSGACGTLMRNAEMKIVNPETGVSLSRNQPGEIYVRSPQMMKGYLNDEEATKGIIDGDGWLHTGDIGLVDDDDEVFIVDRLKELIKYKGFQVAPAELEGLLISNVHIVDVAVIPMKDEVAGEAPVAFIVRSDGSNITEDEIKEYISKQVVFYKRINRVFFVDSIPKSPSGKILRRQLRALLPASIPN 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1859499 1863203 + CmaCh10G004010.1 Cma10g00401 301717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00401 545 CDD 4CL 21 535 - -
Cma10g00401 545 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 7 538 - -
Cma10g00401 545 Gene3D - 4 439 IPR042099 -
Cma10g00401 545 Pfam AMP-binding enzyme 34 445 IPR000873 -
Cma10g00401 545 Pfam AMP-binding enzyme C-terminal domain 454 529 IPR025110 -
Cma10g00401 545 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 538 - -
Cma10g00401 545 SUPERFAMILY Acetyl-CoA synthetase-like 15 538 - -
Cma10g00401 545 Gene3D - 440 541 IPR045851 -
Cma10g00401 545 ProSitePatterns Putative AMP-binding domain signature. 189 200 IPR020845 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00666 Cma10g00401 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00401 Cma-Chr10:1859499 Cma14g01039 Cma-Chr14:5470037 0 dispersed
Cma10g00401 Cma-Chr10:1859499 Cma11g00400 Cma-Chr11:1971997 0 wgd
Cma10g00401 Cma-Chr10:1859499 Cma05g00666 Cma-Chr5:3423758 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00401 K01904 - csv:101218077 855.514