Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00403 ATGGAAGCCCTCCAGATTCTTGGCACCGAAACCGATATCTCCGAGGAGGTTTTGATAGCTCGAGTCATCGACCTCCATGGGAGCATCTCGAGGCTTGAAACCCTAAAGCCATGCAAGGAAGTGAACGGCCTCTTCACCAACCTTGTGAAATTTTGCATTTTGCCTTGTTCAATAGATGTCTCCACATTGCCACCCCATTTACAAGCCATTCGTGAGAGCCTCATACTTTTTTGTGGCCGAGCCGAGGGGTTACTCGAGTTAGAATTCTCGACCATGCTCGGAAAAATCCCAAAACCTCTCAACAATCTCACTCTATTTCCATATTATGACAACTACATCAAATTAGCCCACCTTGAATACAAGATATTGATTGACAATGGAGTTGTGAATCCAAAAAAGGTAGCTTTTGTGGGGTCCGGTCCTCTTCCTCTAACTTCCATTATATTGGCCATGCAACACATGAAGAACACGTATTTCGACAACTACGACATCGATAGCATGGCAAATGAGGTGGCGGGAAAGATCGTGGCTTCCGACGGTGAGCTGGAGGGAAGAATGAAGTTTTGGACGAGGGATATTGTTGAGGTAGGAGAAGAGCTTGAGGGATACGATTGTGTGTTCTTGGCGGCTCTTGTGGGGTTGAAGAAGGAAGATAAAGTGAAGATTTTAAGTCACTTGAGAAAGTATATGAAACAAGGTGGGGTTTTGGTTGTGAGAAGTGCTAAAGGAGGTCGAGCCTTTTTGTACCCCGTGGTTGAGGTCGCCGATATGGTTGGCTTTGACATTCTCTCTATTTTTCATCCCTCTGATGACGTCGTCAATTCCGTTCTCTTGGCTCGCAAACCTATACTCATATGA 858 45.45 MEALQILGTETDISEEVLIARVIDLHGSISRLETLKPCKEVNGLFTNLVKFCILPCSIDVSTLPPHLQAIRESLILFCGRAEGLLELEFSTMLGKIPKPLNNLTLFPYYDNYIKLAHLEYKILIDNGVVNPKKVAFVGSGPLPLTSIILAMQHMKNTYFDNYDIDSMANEVAGKIVASDGELEGRMKFWTRDIVEVGEELEGYDCVFLAALVGLKKEDKVKILSHLRKYMKQGGVLVVRSAKGGRAFLYPVVEVADMVGFDILSIFHPSDDVVNSVLLARKPILI 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1871401 1872258 + CmaCh10G004030.1 Cma10g00403 301719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00403 285 PANTHER NICOTIANAMINE SYNTHASE 3 2 283 IPR004298 GO:0030410|GO:0030418
Cma10g00403 285 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 125 240 IPR029063 -
Cma10g00403 285 Pfam Nicotianamine synthase protein 15 282 IPR004298 GO:0030410|GO:0030418
Cma10g00403 285 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 11 285 IPR004298 GO:0030410|GO:0030418
Cma10g00403 285 Gene3D Vaccinia Virus protein VP39 24 282 IPR029063 -
Cma10g00403 285 PANTHER NICOTIANAMINE SYNTHASE 2 283 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00403 Cma-Chr10:1871401 Cma11g01235 Cma-Chr11:8123732 9.22E-101 dispersed
Cma10g00403 Cma-Chr10:1871401 Cma05g01074 Cma-Chr5:8505799 7.66E-92 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00403 K05953 - csv:101209464 451.055