Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00418 ATGTGGCAGAGAGGTCGCCACGTGTCGGACACAGCCACTTCCCTCCTTCTGAAACCAAATCCAAAGCGCACCAAATATCTCTCCCAGCTCCTCACCCAACACACCCAGCACCCTGTTTCTTGGCGGGAGACTCTGGAGGCTTCTGAATTCACAACGCCATCAACCATGGGAATTCAGGGAGACAGTGTTGTGAAGGGTTTCGGCGGCGGATGGGGCGTGGTCGCTAAACCCTGCGACTCCTGCAAGACAGGGCCTGCAGCCGTCTATTGTCGACCTGACTCTGCTTTCCTCTGCCTTTCCTGCGACGCCAAAATTCACTGCGCTAATAAGTTCGCCTCTCGCCACGAGCGCGTCTGGATGTGCGAGGTCTGTGAACAGGCTCCTGCTGTGGTCATGTGCAAGGCCGATGCTGCAGCTCTCTGTGTTGCATGCGATGCCGATATTCATTCCGCTAACCCATTGGCACGTCGCCACGAGCGTGTCCCGGTCGAGCCTTTTTTCGACACGGCCGAGTTAATGATCAAATCCTCTTCGGGTTTCAATTTTCTCCTGCCCACTGAAACCAACGCCAGTGGCTGCCACGGTGCCCATCATCACGAGGAAATGGAGGTTGCCTCCTGGCTTTTATCCAACCCACCTTTCAACTCTAAGCTCGTGGACGAACCTGAAATCAAGCCACCTGGTCATGATCATATGTTCTTCACTGAAATGGATTCCTTTATTGATTTTGACTACCCAAACCCAGTCAACAACCACAGCGCGATTAACGACAGCGTCGTCCCTGTTCAAACCAAGCCACTCTGTACTCCGGTGATCAATACCCACTCCCCAGAAAATTGCTACGACATCGATTTTTGCAGATCCAAGCTCAATTCATTCGGCCATCAACCTCTAACCCTGAGCCACAGTGTTTCCTCTTCTTCCCTAGAAGTCGGAGTTGTCCCAGAAGCGAATTCGATGTCCGACATATCATACCGGTTGGGTCAAAGCGTGAGTAGTGGGGGGGACTCGGGGCTACCGGTATCGGGATCCGGCAACCAAGCGACTCAATTATGTGGAATCGACCGGGAGGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACAGAAAGTTCGAGAAGACAATCCGGTACGCTTCAAGAAAAGCTTACGCCGAAACCCGACCCAGAATCAAAGGCCGGTTCGCTAAACGGACTGTCACGCTATCAGAGGTTGAAGAAATGTATGGGTCGGCTGGTTCGTCTCTGTTCTTGGCAGACACCCAGTACGGCGTGGTACCGACGTTTTAA 1290 52.95 MWQRGRHVSDTATSLLLKPNPKRTKYLSQLLTQHTQHPVSWRETLEASEFTTPSTMGIQGDSVVKGFGGGWGVVAKPCDSCKTGPAAVYCRPDSAFLCLSCDAKIHCANKFASRHERVWMCEVCEQAPAVVMCKADAAALCVACDADIHSANPLARRHERVPVEPFFDTAELMIKSSSGFNFLLPTETNASGCHGAHHHEEMEVASWLLSNPPFNSKLVDEPEIKPPGHDHMFFTEMDSFIDFDYPNPVNNHSAINDSVVPVQTKPLCTPVINTHSPENCYDIDFCRSKLNSFGHQPLTLSHSVSSSSLEVGVVPEANSMSDISYRLGQSVSSGGDSGLPVSGSGNQATQLCGIDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTVTLSEVEEMYGSAGSSLFLADTQYGVVPTF 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1909783 1911709 + CmaCh10G004180.1 Cma10g00418 301734

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00418 429 CDD Bbox1_BBX-like 121 163 - -
Cma10g00418 429 Pfam CCT motif 356 398 IPR010402 GO:0005515
Cma10g00418 429 ProSiteProfiles Zinc finger B-box type profile. 116 163 IPR000315 GO:0008270
Cma10g00418 429 CDD Bbox1_BBX-like 77 120 - -
Cma10g00418 429 Pfam B-box zinc finger 118 163 IPR000315 GO:0008270
Cma10g00418 429 SMART bboxneu5 121 163 IPR000315 GO:0008270
Cma10g00418 429 SMART bboxneu5 73 120 IPR000315 GO:0008270
Cma10g00418 429 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 64 429 - -
Cma10g00418 429 ProSiteProfiles Zinc finger B-box type profile. 78 120 IPR000315 GO:0008270
Cma10g00418 429 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 64 429 IPR045281 GO:0009909
Cma10g00418 429 ProSiteProfiles CCT domain profile. 356 398 IPR010402 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00418 - - - csv:101214816 657.907
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00679 Cma10g00418 CCT
Cma10g00418 Cma11g00415 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00438 Cma-Chr1:2208080 Cma10g00418 Cma-Chr10:1909783 7.68E-50 dispersed
Cma10g00418 Cma-Chr10:1909783 Cma12g00377 Cma-Chr12:1944414 2.17E-93 dispersed
Cma10g00418 Cma-Chr10:1909783 Cma11g00415 Cma-Chr11:2035908 0 wgd
Cma10g00418 Cma-Chr10:1909783 Cma05g00679 Cma-Chr5:3501656 2.09E-99 wgd
Cma10g00418 Cma-Chr10:1909783 Cma05g00679 Cma-Chr5:3501656 2.09E-99 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g1077 . . . . . . . . Cmo10g00449 Cmo11g00414 Cma05g00679 . Car05g00623 . Sed08g0523 Cpe04g01287 Cpe18g00605 Bhi02g00794 Tan09g1648 Cmetu02g0351 . Hepe09g0511 . . Cla11g01201 Cam11g1260 Cec11g1272 Cco11g1273 Clacu11g1418 Cmu11g1240 Cre11g1658 . . Cone11ag0169 Cone18ag1317 Lsi06g01109 Csa02g00615 Chy05g00918 Cme02g01520 . . . Bda09g00945 Bpe08g00686 Bpe13g01202 Bma01g00353 Bma06g00924 Sed03g2846 Cmo05g00714 . Cma10g00418 Cma11g00415 Car10g00391 . Cpe11g00603 . Bhi06g01274 Tan08g0825 Cmetu05g0666 . Hepe08g2141 . . Cla06g01299 Cam06g1444 Cec06g1497 Cco06g1497 Clacu06g1404 Cmu06g1365 Cre06g2174 Lsi11g00747 Csa01g02115 Chy02g02191 Cme05g01392
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma12g00377 CCT 6 333 C2C2-CO-like Transcription Factor Family AT5G15850 50.4 2.5e-45 180.3
Cma12g00377 CCT 4 333 C2C2-CO-like Transcription Factor Family AT3G02380 50.6 1.5e-42 171.0
Cma05g00338 CCT 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 60.9 5.3e-83 305.4
Cma12g00377 CCT 1 333 C2C2-CO-like Transcription Factor Family AT5G24930 59.2 1.9e-77 287.0
Cma11g00415 CCT,CST 20 371 C2C2-CO-like Transcription Factor Family AT5G24930 50.3 2.5e-56 216.9
Cma10g00418 CCT,CST 75 429 C2C2-CO-like Transcription Factor Family AT5G24930 50.1 1.5e-53 207.6
Cma11g00415 CCT,CST 5 371 C2C2-CO-like Transcription Factor Family AT5G57660 50.3 3.2e-64 243.0
Cma20g00703 CCT,CST 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 55.5 3.2e-91 332.8
Cma19g00837 CCT 1 411 C2C2-CO-like Transcription Factor Family AT3G07650 54.0 8.1e-87 318.2
Cma02g00242 CCT,CST 79 486 C2C2-CO-like Transcription Factor Family AT3G07650 54.4 8.1e-87 318.2
Cma11g01303 . 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 52.9 1.1e-83 307.8
Cma02g00242 CCT,CST 79 486 C2C2-CO-like Transcription Factor Family AT5G48250 56.0 1.8e-86 317.0
Cma20g00703 CCT,CST 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 2.4e-86 316.6
Cma19g00837 CCT 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 3.4e-85 312.8
Cma11g01303 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 53.6 6.7e-81 298.5
Cma02g00242 CCT,CST 79 486 C2C2-CO-like Transcription Factor Family AT5G48250 56.0 1.8e-86 317.0
Cma20g00703 CCT,CST 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 2.4e-86 316.6
Cma19g00837 CCT 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 3.4e-85 312.8
Cma11g01303 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 53.6 6.7e-81 298.5
Cma11g01083 . 1 199 C2C2-CO-like Transcription Factor Family AT1G75540 56.7 4.4e-52 202.6
Cma19g00687 CCT,ECH 1 206 C2C2-CO-like Transcription Factor Family AT1G75540 52.9 1.7e-48 190.7
Cma04g00659 CST 1 203 C2C2-CO-like Transcription Factor Family AT1G78600 54.7 3.7e-56 216.1
Cma16g00606 . 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 61.4 7.6e-56 214.2
Cma07g00442 CST 1 132 C2C2-CO-like Transcription Factor Family AT2G21320 69.7 4.1e-49 191.8
Cma03g00703 CST 1 109 C2C2-CO-like Transcription Factor Family AT2G21320 78.9 1.0e-47 187.2
Cma16g00606 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 64.0 1.5e-57 219.9
Cma07g00442 CST 1 151 C2C2-CO-like Transcription Factor Family AT4G38960 66.9 1.3e-50 196.8
Cma03g00703 CST 1 143 C2C2-CO-like Transcription Factor Family AT4G38960 65.0 2.8e-48 189.1
Cma11g01083 . 1 197 C2C2-CO-like Transcription Factor Family AT4G39070 58.4 1.5e-52 203.8
Cma19g00687 CCT,ECH 1 201 C2C2-CO-like Transcription Factor Family AT4G39070 55.6 6.7e-50 194.9
Cma12g00429 CCT,CST,ECH 26 231 C2C2-CO-like Transcription Factor Family AT4G39070 50.5 2.5e-44 176.4
Cma05g00283 CCT,CST,ECH 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 51.2 4.2e-44 175.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003973 3 1 1 3 2 1 2 1 1 2 1 1 2 2 2 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35715 PF00643 zf-B_box 8.90E-07 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00418 Cma_Chr10 FPKM 164.75174 171.298141 38.625854 36.246696 70.084702 69.490463 65.376808 3.503786 3.265194 3.317911