Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00418 ATGTGGCAGAGAGGTCGCCACGTGTCGGACACAGCCACTTCCCTCCTTCTGAAACCAAATCCAAAGCGCACCAAATATCTCTCCCAGCTCCTCACCCAACACACCCAGCACCCTGTTTCTTGGCGGGAGACTCTGGAGGCTTCTGAATTCACAACGCCATCAACCATGGGAATTCAGGGAGACAGTGTTGTGAAGGGTTTCGGCGGCGGATGGGGCGTGGTCGCTAAACCCTGCGACTCCTGCAAGACAGGGCCTGCAGCCGTCTATTGTCGACCTGACTCTGCTTTCCTCTGCCTTTCCTGCGACGCCAAAATTCACTGCGCTAATAAGTTCGCCTCTCGCCACGAGCGCGTCTGGATGTGCGAGGTCTGTGAACAGGCTCCTGCTGTGGTCATGTGCAAGGCCGATGCTGCAGCTCTCTGTGTTGCATGCGATGCCGATATTCATTCCGCTAACCCATTGGCACGTCGCCACGAGCGTGTCCCGGTCGAGCCTTTTTTCGACACGGCCGAGTTAATGATCAAATCCTCTTCGGGTTTCAATTTTCTCCTGCCCACTGAAACCAACGCCAGTGGCTGCCACGGTGCCCATCATCACGAGGAAATGGAGGTTGCCTCCTGGCTTTTATCCAACCCACCTTTCAACTCTAAGCTCGTGGACGAACCTGAAATCAAGCCACCTGGTCATGATCATATGTTCTTCACTGAAATGGATTCCTTTATTGATTTTGACTACCCAAACCCAGTCAACAACCACAGCGCGATTAACGACAGCGTCGTCCCTGTTCAAACCAAGCCACTCTGTACTCCGGTGATCAATACCCACTCCCCAGAAAATTGCTACGACATCGATTTTTGCAGATCCAAGCTCAATTCATTCGGCCATCAACCTCTAACCCTGAGCCACAGTGTTTCCTCTTCTTCCCTAGAAGTCGGAGTTGTCCCAGAAGCGAATTCGATGTCCGACATATCATACCGGTTGGGTCAAAGCGTGAGTAGTGGGGGGGACTCGGGGCTACCGGTATCGGGATCCGGCAACCAAGCGACTCAATTATGTGGAATCGACCGGGAGGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACAGAAAGTTCGAGAAGACAATCCGGTACGCTTCAAGAAAAGCTTACGCCGAAACCCGACCCAGAATCAAAGGCCGGTTCGCTAAACGGACTGTCACGCTATCAGAGGTTGAAGAAATGTATGGGTCGGCTGGTTCGTCTCTGTTCTTGGCAGACACCCAGTACGGCGTGGTACCGACGTTTTAA 1290 52.95 MWQRGRHVSDTATSLLLKPNPKRTKYLSQLLTQHTQHPVSWRETLEASEFTTPSTMGIQGDSVVKGFGGGWGVVAKPCDSCKTGPAAVYCRPDSAFLCLSCDAKIHCANKFASRHERVWMCEVCEQAPAVVMCKADAAALCVACDADIHSANPLARRHERVPVEPFFDTAELMIKSSSGFNFLLPTETNASGCHGAHHHEEMEVASWLLSNPPFNSKLVDEPEIKPPGHDHMFFTEMDSFIDFDYPNPVNNHSAINDSVVPVQTKPLCTPVINTHSPENCYDIDFCRSKLNSFGHQPLTLSHSVSSSSLEVGVVPEANSMSDISYRLGQSVSSGGDSGLPVSGSGNQATQLCGIDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTVTLSEVEEMYGSAGSSLFLADTQYGVVPTF 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1909783 1911709 + CmaCh10G004180.1 Cma10g00418 301734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00418 429 CDD Bbox1_BBX-like 121 163 - -
Cma10g00418 429 Pfam CCT motif 356 398 IPR010402 GO:0005515
Cma10g00418 429 ProSiteProfiles Zinc finger B-box type profile. 116 163 IPR000315 GO:0008270
Cma10g00418 429 CDD Bbox1_BBX-like 77 120 - -
Cma10g00418 429 Pfam B-box zinc finger 118 163 IPR000315 GO:0008270
Cma10g00418 429 SMART bboxneu5 121 163 IPR000315 GO:0008270
Cma10g00418 429 SMART bboxneu5 73 120 IPR000315 GO:0008270
Cma10g00418 429 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 64 429 - -
Cma10g00418 429 ProSiteProfiles Zinc finger B-box type profile. 78 120 IPR000315 GO:0008270
Cma10g00418 429 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 64 429 IPR045281 GO:0009909
Cma10g00418 429 ProSiteProfiles CCT domain profile. 356 398 IPR010402 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00679 Cma10g00418 CCT
Cma10g00418 Cma11g00415 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00438 Cma-Chr1:2208080 Cma10g00418 Cma-Chr10:1909783 7.68E-50 dispersed
Cma10g00418 Cma-Chr10:1909783 Cma12g00377 Cma-Chr12:1944414 2.17E-93 dispersed
Cma10g00418 Cma-Chr10:1909783 Cma11g00415 Cma-Chr11:2035908 0 wgd
Cma10g00418 Cma-Chr10:1909783 Cma05g00679 Cma-Chr5:3501656 2.09E-99 wgd
Cma10g00418 Cma-Chr10:1909783 Cma05g00679 Cma-Chr5:3501656 2.09E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35715 PF00643 zf-B_box 8.90E-07 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00418 - - csv:101214816 657.907