Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00428 ATGGCTACAATTTGTGTTCCTGGAATCAACAGCTTTTATTCTGATCACAAAAAGCATAAGGAATCTGCCATTGGAAGCAGCAACAATGAAGCAATGCAACTTGAGAAGTCATCATCAAAATACTATATTCCGTCGTCTACATTCTTAATGCCTGACAATGGACTAGGGGGAATCAAAAGTAAATTCACTGAAACTTTTAAAACTGAGAAGTCTAAGGTGTTTCCGGAGGACCATGAACCATGGAGCAAAAGAATACTAGACCCTGGTAGCAAAATTGTTTTGAAATGGAACCGAGTGTTCATATGTTCGTGCTTATTGGCACTCTTTGTCGACCCGCTATATCTTTACTTGCCTGCTTTTAATGGGAATGGGCAATCCCAATGCGTGAGGACAGACTGGAAATTGCGAATTGTTGTGACCTGTTTCCGGACTGTTGCAGATTTTTTCTATCTTCTGCACATGATTATAAAGTTTAGAACAGCTTATGTTGCTCCTAGCTCTCGAGTTTTTGGGAGAGGTGAGCTTGTGATGGATCCAAAGATGATAGCAAAGAGGTATATTAGATCTGATTTTTGCATCGATCTAATTGCCACCCTGCCTCTCCCTCAGATTGTCATCTGGTTCATCATACCTGCAACAAGGAGTCGTCTAACGGATCATAAAAACAATGCTCTTGCACTTATTGTTCTGCTTCAATATATTCCGAGATTGTATTTGATTTTCCCATTAAGTTCAGAAATCATCAAAGCAAATGGAGTTGTTACAAAGACAGCTTGGGCAGGAGCTGCTTATAATCTTCTTCTCTATATGTTGGCTAGCCATGTTTTAGGTGCTACATGGTATTTGCTGTCGGTTGATAGATATACGTCATGCTGGAAATCATTTTGTAGGAAGAAAGAATACAATACACTGGAATGCAATCTAACTTTTTTTGATTGCGATACATTTAACCATAATGACCGCGATACATGGGCAAATAGCACACTTGTTTTTGAAAAATGTGGCCCGGATGGAATTTTCAAGTATGGCATTTTTGGGCAAGCAATGTCGAAGAATGTCGTCTCTTCAAGCTTTATTGAAAAGTACTTCTATTGTTTGTGGTGGGGCTTGCAAAACCTGAGTTCATATGGACAGAATTTGGAAACAACCACTTTTATGGGTGAGACACTGTTTGCTGTGCTCATTGCCATTGTAGGCCTTGTATTATTTGCCCATCTTATCGGAAACATGCAGACGTATCTGCAATCCCTCACTGTGAGGCGTGAAGAATGGAGACTAAAGCAAAGAGACACTGAAGAGTGGATGAGACATCGTCAACTCCCTGAAGACTTGAAACGACGAGTTCGACGTTTTGTACAATATAAGTGGGTAGCAACCCAAGGAGTTGATGAAGAAGTCATCTTGCAAAGCTTGCCTGCTGATCTTCGACGTGATATTCAGTGCCACCTATGTCTAGATCTTGTCCGACGAGTTCCGTTCTTCGCACAGATGGATGATCAGCTACTTGATGCAATATGTGAACGCCTGATCTCCTCCTTGAGCACTGAAGGTACTTATATTGTACGGGAAGGGGACCCAGTGACAGAGATGTTGTTTGTTATACGAGGCAGATTGGAGAGCTCTACCACAAATGGAGGCCGCTCTGGTTTCTTTAACTCGATAACATTACGTCCTGGAGACTTTTGTGGGGAGGAGCTACTTTCTTGGGCCTTGCTTCCAAAATCAACCACCAACTTGCCCTCCTCAACTAGGACAGTCAGAGCGCTCAACGAAGTTGAAGCTTTTGCACTCCGCGCCGAAGATCTTAAATTTGTGGCCAACCAATTTAGACGTCTGCACAGTAAAAAATTGCAGCACACATTCCGCTTTTACTCTCACCATTGGAGAACATGGGCAGCTTGCTTTATTCAAGCTGCTTGGCGTCGCCATAAGAAAAGGATGATGGCAAAAGATCTGTTAATGAAGGAATCATTTACGTTACCAGAAGTGGCAGATGGAACTAGCCAAGGAGGAGAAGGATTCTCTGTTGTTTCACATCCATCTCAGGCTAAAATGTTTCTGGATGTAGCCTTACTAGCTTCAAGGTTTGCTGCAAACACACGGAGAGGCGCTCGAGAATGA 2121 42.34 MATICVPGINSFYSDHKKHKESAIGSSNNEAMQLEKSSSKYYIPSSTFLMPDNGLGGIKSKFTETFKTEKSKVFPEDHEPWSKRILDPGSKIVLKWNRVFICSCLLALFVDPLYLYLPAFNGNGQSQCVRTDWKLRIVVTCFRTVADFFYLLHMIIKFRTAYVAPSSRVFGRGELVMDPKMIAKRYIRSDFCIDLIATLPLPQIVIWFIIPATRSRLTDHKNNALALIVLLQYIPRLYLIFPLSSEIIKANGVVTKTAWAGAAYNLLLYMLASHVLGATWYLLSVDRYTSCWKSFCRKKEYNTLECNLTFFDCDTFNHNDRDTWANSTLVFEKCGPDGIFKYGIFGQAMSKNVVSSSFIEKYFYCLWWGLQNLSSYGQNLETTTFMGETLFAVLIAIVGLVLFAHLIGNMQTYLQSLTVRREEWRLKQRDTEEWMRHRQLPEDLKRRVRRFVQYKWVATQGVDEEVILQSLPADLRRDIQCHLCLDLVRRVPFFAQMDDQLLDAICERLISSLSTEGTYIVREGDPVTEMLFVIRGRLESSTTNGGRSGFFNSITLRPGDFCGEELLSWALLPKSTTNLPSSTRTVRALNEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRHKKRMMAKDLLMKESFTLPEVADGTSQGGEGFSVVSHPSQAKMFLDVALLASRFAANTRRGARE 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1952298 1956127 - CmaCh10G004280.1 Cma10g00428 301744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00428 706 ProSiteProfiles cAMP/cGMP binding motif profile. 493 577 IPR000595 -
Cma10g00428 706 SUPERFAMILY Voltage-gated potassium channels 88 415 - -
Cma10g00428 706 Pfam Cyclic nucleotide-binding domain 516 604 IPR000595 -
Cma10g00428 706 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 58 705 - -
Cma10g00428 706 Gene3D Helix hairpin bin 419 484 - -
Cma10g00428 706 Pfam Ion transport protein 96 421 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cma10g00428 706 Gene3D Jelly Rolls 491 611 IPR014710 -
Cma10g00428 706 Gene3D - 101 418 - -
Cma10g00428 706 SUPERFAMILY cAMP-binding domain-like 420 615 IPR018490 -
Cma10g00428 706 CDD CAP_ED 493 624 IPR000595 -
Cma10g00428 706 PRINTS EAG/ELK/ERG potassium channel family signature 362 379 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma10g00428 706 PRINTS EAG/ELK/ERG potassium channel family signature 271 281 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma10g00428 706 PRINTS EAG/ELK/ERG potassium channel family signature 406 415 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma10g00428 706 PRINTS EAG/ELK/ERG potassium channel family signature 388 399 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma10g00428 706 PRINTS EAG/ELK/ERG potassium channel family signature 154 163 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma10g00428 706 PRINTS EAG/ELK/ERG potassium channel family signature 456 463 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma10g00428 706 SMART cnmp_10 493 624 IPR000595 -
Cma10g00428 706 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 58 705 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01579 Cma-Chr1:10909946 Cma10g00428 Cma-Chr10:1952298 0 dispersed
Cma10g00428 Cma-Chr10:1952298 Cma14g00640 Cma-Chr14:3173518 0 dispersed
Cma13g01096 Cma-Chr13:8252978 Cma10g00428 Cma-Chr10:1952298 6.29E-140 dispersed
Cma10g00428 Cma-Chr10:1952298 Cma11g00421 Cma-Chr11:2074262 0 wgd
Cma10g00428 Cma-Chr10:1952298 Cma12g00858 Cma-Chr12:6341807 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00428 K05391 - csv:101218643 1303.89