Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00444 ATGGCTTTTGCATTTTCACGCTCTTCAGGCAATATGGTCTGCTGCTGCTTTTTCTTTTTTCTGCATTTCTTCGCAGCCATGGTTCCTAAACTCTTCTGTTTGATCATTCTCTCTTCTGCCTTTCTCTGCCTTGCTTATGAACCTCGGAACCCTGAAGTGCAAGCTCTGATCAATTTGAAGACGGCATTGAATGATCCGCACGGCGTGCTCAGCAATTGGGATGAGGACTCTGTGGACCCTTGTAGTTGGGCAATGATCACCTGCTCCCCGGAGAACCTCGTTATAGGACTGGGAGCTCCGAGCCAGTCTCTTTCCGGAAGCTTATCTGGAGGGATTGGGAACCTCACTAATCTTCGCCAAGTGCTGCTGCAGAACAACAACATTTCCGGTCCAATTCCCATTGAACTTGGAGCTCTCCCGTTGCTGCAAACACTAGATCTCTCTAACAATCGGTTCTCGGGCCCAATACCAGCATCTTTTGCTCAGCTGAATGGTCTACGCTATCTGAGGGTGAACAATAATAGCTTGTCCGGGCCTTTTCCCTCGTCTTTGGCCAAAATTCCCCAGCTTGCTTTCTTGGATTTGTCTTTTAACAATCTCAGTGGACCAGTGCCTGTGTTTCCAGCCAGAACATTCAATGTGGTGGGAAATCCAATGATATGTGGAAATAGTCCTAATGAAGGTTGCTCTGGCTCAGCCAACGCCGTTCCTCTTTCTTTCTCTCTAGAATCAGCCCCTGGAAGACTCAGGTCCAAAAGAATTGGAGTGGCACTTGGGGTCAGCCTCAGCTGTGCGTTTCTGACAATCCTAGCCCTTGGAATTCTGTGGCGCAGAAAAACTCAGAAGACTAAAACCATCCTAGACTTCAATGTAAACAATCAAGAAGTTGGCCTTGTGCGCTTCGGCAACCTCAGAAACTTCACTTTCAAGGAACTCCAGTTAGCAACAGACCATTTTAGTTCCAAAAATATACTTGGGGCTGGAGGCTTTGGTAATGTGTATAAGGGAAAGCTAGGAGACGGGACTATGGTGGCAGTCAAACGGCTAAAAGATATAACGGGTACTACTGGAGAGTCCCAGTTCCGCACAGAATTGGAGATGATTAGCCTTGCAGTTCATCGCAATTTGCTTCGCTTAATTGGTTATTGTGCCACTTCTCACGAGAGGCTCTTGGTGTACCCATACATGTCAAATGGCAGTGTAGCTTCCAGGCTCAGAGGAAAACCAGCCTTAGACTGGAACACGAGGAAGAGAATAGCAATTGGAGCAGCCAGGGGTCTGCTGTACCTCCACGAGCAATGTGATCCTAAGATAATCCATAGAGATGTGAAGGCCGCCAATGTGCTTCTAGATGACTACTGCGAAGCCGTAGTTGGTGATTTTGGACTTGCAAAGCTTCTTGACCATGCCGACTCTCATGTGACCACTGCTGTTCGTGGCACTGTTGGGCACATCGCTCCAGAGTATCTTTCAACTGGCCAATCTTCTGAGAAGACAGATGTGTTTGGGTTTGGCATTCTTTTGATAGAGCTAATTACTGGAATGCGAGCTCATGAACATGGGAAAACATCTAACCAAAAAGGCGCCATGCTTGAGTGGGTGAAAAAGATACAACAGGAAAAGAAAGTGGAATTGCTTGTGGACAGAGAGCTAGGCAACAACTATGATCAGATTGAAGTTGGGGAAATGTTGCAAGTGGCTCTTCTTTGCACTCAGTATTTACCTGCTCACCGTCCCAAGATGTCGGAGGTGGTCCGAATGCTTGAAGGGGATGGCCTTGTTGAGAAATGGGCTGCTTCCCACACCCATAATGACTTAAATATCGACCTCTTTCATTCACGGAACAGCTGCAAAAGTTCATACAATCCCACAAATGCATTGAAGAGTAACGGCAATGATCATTCAAGCATGTTAAGTTTGACATTGGACGACGACGACGAGGAGCGATCTTTAGACTCCTATGCCATGGAACTCTCCGGTCCAAGATAG 1989 47.01 MAFAFSRSSGNMVCCCFFFFLHFFAAMVPKLFCLIILSSAFLCLAYEPRNPEVQALINLKTALNDPHGVLSNWDEDSVDPCSWAMITCSPENLVIGLGAPSQSLSGSLSGGIGNLTNLRQVLLQNNNISGPIPIELGALPLLQTLDLSNNRFSGPIPASFAQLNGLRYLRVNNNSLSGPFPSSLAKIPQLAFLDLSFNNLSGPVPVFPARTFNVVGNPMICGNSPNEGCSGSANAVPLSFSLESAPGRLRSKRIGVALGVSLSCAFLTILALGILWRRKTQKTKTILDFNVNNQEVGLVRFGNLRNFTFKELQLATDHFSSKNILGAGGFGNVYKGKLGDGTMVAVKRLKDITGTTGESQFRTELEMISLAVHRNLLRLIGYCATSHERLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDYCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLIELITGMRAHEHGKTSNQKGAMLEWVKKIQQEKKVELLVDRELGNNYDQIEVGEMLQVALLCTQYLPAHRPKMSEVVRMLEGDGLVEKWAASHTHNDLNIDLFHSRNSCKSSYNPTNALKSNGNDHSSMLSLTLDDDDEERSLDSYAMELSGPR 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2008732 2016213 - CmaCh10G004440.1 Cma10g00444 301760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00444 662 MobiDBLite consensus disorder prediction 621 638 - -
Cma10g00444 662 Pfam Leucine rich repeat 141 200 IPR001611 GO:0005515
Cma10g00444 662 Pfam Leucine rich repeat N-terminal domain 50 89 IPR013210 -
Cma10g00444 662 Pfam Protein tyrosine and serine/threonine kinase 322 588 IPR001245 GO:0004672|GO:0006468
Cma10g00444 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 438 450 IPR008271 GO:0004672|GO:0006468
Cma10g00444 662 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 31 662 - -
Cma10g00444 662 ProSitePatterns Protein kinases ATP-binding region signature. 325 347 IPR017441 GO:0005524
Cma10g00444 662 SUPERFAMILY Protein kinase-like (PK-like) 298 589 IPR011009 -
Cma10g00444 662 SUPERFAMILY L domain-like 50 214 - -
Cma10g00444 662 SMART serkin_6 319 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00444 662 Gene3D Transferase(Phosphotransferase) domain 1 396 607 - -
Cma10g00444 662 Gene3D Ribonuclease Inhibitor 49 231 IPR032675 -
Cma10g00444 662 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 31 662 - -
Cma10g00444 662 Gene3D Phosphorylase Kinase; domain 1 288 395 - -
Cma10g00444 662 ProSiteProfiles Protein kinase domain profile. 319 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00444 662 MobiDBLite consensus disorder prediction 621 644 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00444 Cma11g00435 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00444 Cma-Chr10:2008732 Cma15g00205 Cma-Chr15:1002463 0 dispersed
Cma10g00444 Cma-Chr10:2008732 Cma11g00435 Cma-Chr11:2124893 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68834 PF07714 PK_Tyr_Ser-Thr 1.40E-42 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00444 - - cmax:111485761 1269.99