Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00446 ATGGCGAAATCCACATCGCAACAACTTCAGATTAGAGAATCGAACAACAATGTAAATAAAAATATTGTAATGAAGACCAAAACAAAGCGAACTCGGAGGAGCGTACCGAGAGATTCGCCTCCTCAACGAAGCTCCATTTACCGCGGCGTTACTAGGCATCGATGGACGGGCAGATATGAGGCTCATCTGTGGGATAAGAATTGCTGGAATGAATCGCAGAACAAGAAAGGAAGACAAGGTGCATACGATGACGAGGAAGCGGCAGCCCATGCGTACGACCTTGCAGCACTAAAATACTGGGGTCAAGAAACCATTCTTAATTTTCCGCTATCGACATACCAAAAAGAGCTGAAGGAAATGGAGGGACAGTCGAGGGAAGAATACATTGGGTCGTTGAGAAGAAAAAGTAGTGGGTTTTCTCGTGGGGTTTCCAAATACAGAGGCGTTGCCAGGCACCATCACAATGGTAGATGGGAAGCTCGAATTGGCAGGGTGTTTGGCAATAAGTATCTCTATCTTGGAACATATGCGACGCAAGAAGAAGCAGCCACGGCGTACGATATCGCAGCCATAGAATACCGTGGACTCAACGCCGTAACCAATTTCGACCTGAGCCGTTACATTAAGTGGCTAAAACCCTGCAACGACGTCGTTTACGCCAGCGACCACACCCTCAACATTGACTCTATCCTCCCAAGCCCTAAACAAGAACTGGACCTAGGGCTCTTCCCGTCGGACCAAAACCAAAGCAGCACCGATTCGGCGACGGCGGAACCAATTGCCTTACCTCCATCCCACAGATCGACCACCACCACGTCAGCTCTCGGCCTCCTGCTCCAATCTTCAAAGTTCAAGGAAATGATGGAGATGAATTCGGCAACGGAGTGCCCGTCGACGCCGTCGTCATCGGAGAAGCTCGAACGGCGACGGTGCTTGTTTCCCGATGATGTTCAGACTTTCTTTGCCTGCGATAGCTCGGGATCTTACTGTTATGGAGAAGCGGATGATGCAATTTTTAGCGACTTCAACTGTTTCGTACCGCCGCCGCCGTCGCATTACGATTTTGACGATTAG 1074 49.53 MAKSTSQQLQIRESNNNVNKNIVMKTKTKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDDEEAAAHAYDLAALKYWGQETILNFPLSTYQKELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDIAAIEYRGLNAVTNFDLSRYIKWLKPCNDVVYASDHTLNIDSILPSPKQELDLGLFPSDQNQSSTDSATAEPIALPPSHRSTTTTSALGLLLQSSKFKEMMEMNSATECPSTPSSSEKLERRRCLFPDDVQTFFACDSSGSYCYGEADDAIFSDFNCFVPPPPSHYDFDD 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2030666 2032795 - CmaCh10G004460.1 Cma10g00446 301762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00446 357 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 2 336 - -
Cma10g00446 357 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 2 336 - -
Cma10g00446 357 MobiDBLite consensus disorder prediction 244 269 - -
Cma10g00446 357 SUPERFAMILY DNA-binding domain 144 205 IPR016177 GO:0003677
Cma10g00446 357 Gene3D AP2/ERF domain 144 205 IPR036955 GO:0003700|GO:0006355
Cma10g00446 357 Gene3D AP2/ERF domain 46 111 IPR036955 GO:0003700|GO:0006355
Cma10g00446 357 ProSiteProfiles AP2/ERF domain profile. 145 203 IPR001471 GO:0003700|GO:0006355
Cma10g00446 357 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Cma10g00446 357 PRINTS Ethylene responsive element binding protein signature 185 205 IPR001471 GO:0003700|GO:0006355
Cma10g00446 357 SMART rav1_2 46 115 IPR001471 GO:0003700|GO:0006355
Cma10g00446 357 SMART rav1_2 145 209 IPR001471 GO:0003700|GO:0006355
Cma10g00446 357 Pfam AP2 domain 144 195 IPR001471 GO:0003700|GO:0006355
Cma10g00446 357 Pfam AP2 domain 46 101 IPR001471 GO:0003700|GO:0006355
Cma10g00446 357 MobiDBLite consensus disorder prediction 25 45 - -
Cma10g00446 357 CDD AP2 144 205 IPR001471 GO:0003700|GO:0006355
Cma10g00446 357 ProSiteProfiles AP2/ERF domain profile. 46 109 IPR001471 GO:0003700|GO:0006355
Cma10g00446 357 SUPERFAMILY DNA-binding domain 45 111 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00580 Cma-Chr8:3318157 Cma10g00446 Cma-Chr10:2030666 7.01E-130 dispersed
Cma10g00446 Cma-Chr10:2030666 Cma11g01039 Cma-Chr11:5690035 2.96E-103 dispersed
Cma10g00446 Cma-Chr10:2030666 Cma17g00910 Cma-Chr17:6863250 7.31E-138 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35717 PF00847 AP2 3.50E-09 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00446 K09285 - csv:101219103 637.491