Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00456 ATGGCAGCAAAAACTGAAGGTAAAGCCATAGGCATCGACCTCGGCACCACCTACAGCTGCGTCGGGGTTTGGCTGAACGATCGCGTCGAGATTATCCCCAACGATCAAGGTAACCGAACCACACCCTCTTATGTAGCTTTCACTGACACTGAGCGTTTGATCGGTGATGCGGCCAAGAATCAGGTCGCTATGAACCCTCAGAACACCGTCTTCGACGCCAAACGATTGATCGGCCGGCGACTCTCCGATCCCTCTGTTCAGAGTGACATGAAGCTCTGGCCATTCAAAGTGGTCGCCGGACCCGGCGAAAAGCCGATGATCATCGTCAATTACAAAGGCGAGGAGAAGCAGTTCGCTCCGGAGGAGATTTCTTCTATGGTTTTGATTAAGATGAGAGAAATCGCCGAAGCTTTTCTAGGCCAAACTATCAAGAACGCCGTTATTACAGTCCCTGCTTATTTCAACGATTCACAGAGACAAGCGACGAAAGATGCGGGTGCCATTGCTGGACTCAACGTGTTGCGTATCATCAATGAACCAACGGCGGCTGCGATTGCATATGGTCTGGATAAAAAGGCTTCTCGTAGAGGCGAACAGAACGTTCTGATCTTCGACCTCGGCGGCGGAACTTTCGACGTGTCACTCTTGACCATAGAAGAGGGAATTTTCGAGGTCAAGGCCACCGCCGGCGATACTCATCTCGGTGGCGAAGATTTCGACAACAGGCTCGTAAATCACTTCGTGACAGAGTTCAAGCGCAAGAACAAGAAAGACATAAGCGGCAACGCGAGGGCACTGAGGAGATTGAGGACGGCCTGTGAGCGAGCCAAAAGAGCGCTCTCGTCGACAACGCAAACCACGATTGAAGTCGATTCGCTTTACGAAGGGATTGACTTCTACGCGACAATTACAAGGGCTAGATTTGAGGAATTGTGTATGGATATGTTCATGAAGTGCATGGAGCCTGTGGAGAAATGTATCCGTGATGCTAAAATTGACAAGAGCCAAGTTCATGAGGTTGTTTTAGTCGGTGGATCCACTAGAATTCCCAAAGTGCAACAGCTTCTGCAGGATTACTTCAATGGAAAGGAGCTCTGTAAAAGTATCAACCCGGATGAGGCCGTTGCTTATGGTGCTGCTGTTCAGGCTGCAATTCTAAGTGGGGAAGGAGACGAGAAAGTTCAAGATCTGCTACTTCTCGATGTCACGCCGCTCAGTCTCGGTCTAGAGACGGCCGGTGGCGTCATGACAGTCCTAATTCCTAGGAACACAACAATTCCAACAAAGAAGGAACAAATTTTTTCGACATACTCAGACAACCAGCCAGGAGTTTTGATCCAAGTCTACGAAGGAGAGCGAGCCAGAACTAAAGACAACAATCTACTCGGAAAGTTCGAGCTCACCGGCATTCCTCCAGCACCCAGAGGCGTCCCCCAAATCAATGTCGTATTCGACATCGATGCAAATGGCATTCTCAACGTATCAGCAGAGGACAAGACAGCAGGGGTGAAGAACAAGATCACAATCACCAACGACAAGGGGCGAATGAGCAAGGACGAGATAGAGAGGCTGGTGAAGGAGGCAGAGAAGTACAAAGCAGAGGATGAAGAGGTGAAGAAGAAGGTGGAGGCGAAGAATGCGTTAGAGAATTATGCTTACAACATGAGGAATACTGTGAGGGATGAGAAATTTGCAGGGAAATTGAATCCAGATGATAAGCAGAAGATCGAGAAATCCGTGGAGGACACCATCGAGTGGTTGGATAGGAACCAGCTGGCGGAGGTTGATGAACTTGACGACAAGCTGAAGGAGCTCGAGGGTGTCTGTAATCCCATCATTGCTAAGATGTACCAGGGCGGTGCTGGCGGCGGTGCTCCTATGGGCGATGATATGCCTGGTGGTGGGTCCGCCGGGTCTGGCGGTGCTGGGCCGAAGATCGAGGAGGTTGATTGA 1953 50.18 MAAKTEGKAIGIDLGTTYSCVGVWLNDRVEIIPNDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRLSDPSVQSDMKLWPFKVVAGPGEKPMIIVNYKGEEKQFAPEEISSMVLIKMREIAEAFLGQTIKNAVITVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAAIAYGLDKKASRRGEQNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVTEFKRKNKKDISGNARALRRLRTACERAKRALSSTTQTTIEVDSLYEGIDFYATITRARFEELCMDMFMKCMEPVEKCIRDAKIDKSQVHEVVLVGGSTRIPKVQQLLQDYFNGKELCKSINPDEAVAYGAAVQAAILSGEGDEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVVFDIDANGILNVSAEDKTAGVKNKITITNDKGRMSKDEIERLVKEAEKYKAEDEEVKKKVEAKNALENYAYNMRNTVRDEKFAGKLNPDDKQKIEKSVEDTIEWLDRNQLAEVDELDDKLKELEGVCNPIIAKMYQGGAGGGAPMGDDMPGGGSAGSGGAGPKIEEVD 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2075136 2077739 + CmaCh10G004560.1 Cma10g00456 301772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00456 650 Coils Coil 266 286 - -
Cma10g00456 650 Gene3D - 71 126 - -
Cma10g00456 650 MobiDBLite consensus disorder prediction 619 650 - -
Cma10g00456 650 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Cma10g00456 650 SUPERFAMILY Actin-like ATPase domain 197 388 IPR043129 -
Cma10g00456 650 Coils Coil 514 545 - -
Cma10g00456 650 PRINTS 70kDa heat shock protein signature 8 21 - -
Cma10g00456 650 PRINTS 70kDa heat shock protein signature 36 48 - -
Cma10g00456 650 PRINTS 70kDa heat shock protein signature 58 66 - -
Cma10g00456 650 PRINTS 70kDa heat shock protein signature 146 166 - -
Cma10g00456 650 PRINTS 70kDa heat shock protein signature 209 219 - -
Cma10g00456 650 PRINTS 70kDa heat shock protein signature 337 353 - -
Cma10g00456 650 PRINTS 70kDa heat shock protein signature 369 389 - -
Cma10g00456 650 PRINTS 70kDa heat shock protein signature 396 415 - -
Cma10g00456 650 PRINTS 70kDa heat shock protein signature 477 493 - -
Cma10g00456 650 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Cma10g00456 650 Gene3D - 192 366 - -
Cma10g00456 650 Pfam Hsp70 protein 9 618 IPR013126 GO:0005524|GO:0140662
Cma10g00456 650 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Cma10g00456 650 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 624 IPR029048 -
Cma10g00456 650 Gene3D - 10 384 - -
Cma10g00456 650 PANTHER HEAT SHOCK PROTEIN 70KDA 1 625 IPR013126 GO:0005524|GO:0140662
Cma10g00456 650 Gene3D Actin; Chain A, domain 4 235 318 - -
Cma10g00456 650 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 391 544 IPR029047 -
Cma10g00456 650 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Cma10g00456 650 Gene3D - 545 619 IPR029048 -
Cma10g00456 650 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 37C-RELATED 1 625 - -
Cma10g00456 650 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Cma10g00456 650 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 549 IPR029047 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00456 Cma-Chr10:2075136 Cma15g00400 Cma-Chr15:1791578 0 dispersed
Cma10g00456 Cma-Chr10:2075136 Cma04g02638 Cma-Chr4:17988931 0 transposed
Cma10g00456 Cma-Chr10:2075136 Cma15g00399 Cma-Chr15:1783716 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00456 K03283 - csv:101215564 1166.37