Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00457 ATGGAAGCCAGCGCTGGACTTGTCGCTGGGTCTCACAATCGCAATGAGCTTGTTGTCATTCATGGCCATGAGGAGCCAAAGCCGTTGAAGAACTTGGACGGTCAAGTTTGTGAGATCTGTGGTGATGAAGTGGGGCTTACTGTGGATGGTGATCTGTTTGTTGCTTGCAATGAATGTGGTTTTCCAGTCTGCAGACCCTGCTATGAGTATGAACGAAGAGAAGGAAGCCAACTCTGCCCTCAGTGTAAAACTAGATATAAGAGACTCAAAGGGAGTCCAAGGGTCGAGGGAGACGACGATGAAGAAGACATAGATGACATTGAACATGAGTTCAACATTGATGATGAAAGGAACAACCACAGTCATCTGGCAGAAGCTATGCTTCATGGCAAGATGAGCTATGGTAGAGGCCTTGATGATGATGAAAATGCACAGTATGGAAGAACACAGCCAGTAAATGGTGAGCTTCCTTTATCTTCTCAAGGTTATGGAGAGCAGATGTTGTCTTCTTCGCTGCACAAACGTGTGCATCCATATCCGGTTTCTGAACCAGGGAGTGCAAGATGGGATGAAAAGAGAGAAGGTTGGAAAGATAGAATGGATGATTGGAAATTGCAGCAAGGCAATCTTGGACCTGAACCTGATGATGCCAATGACCCTGACATGGCTATGAATGATGCAGCTAGACAGCCATTATCAAGGAAGGTACCAATAGCATCAAGCAAAATTAATCCTTACCGGATGGTTATTGTGGCCCGGCTCGTTATTCTCGCCTTCTTCCTTCGTTATCGGATTCTAAATCCAGTGCATGATGCATTGGGTTTGTGGCTAACTTCTGTGATATGTGAAATCTGGTTTGCATTTTCATGGATCCTCGATCAGTTCCCCAAATGGTTCCCAATTGATCGTGAAACCTACTTGGATCGTCTAACTCTAAGATATGAACGAGAGGATGAACCTAATTTGCTTGCTCCAGTAGACATCTTCGTCAGTACTGTAGATCCGATGAAGGAACCTCCTCTTGTAACAGCTAACACAATCTTATCTATCTTGGCCATGGACTATCCAGTTGATAAGGTTTCATGCTATGTTTCGGACGATGGAGCGTCCATGCTTACCTTTGAAGCAATGTCTGAAACTGCAGAATTTGCAAGGAAATGGGTCCCTTTTTGTAAGAAGTTCTCCATAGAACCACGAGCACCTGAAATGTACTTTTGTGAGAAGATTGATTATCTCAAGGATAAAGTCCAACCAACATTTGTAAAGGAGCGTCGAGCAATGAAGAGAGAGTATGAAGAATTCAAGGTCAGAATAAATGCTCAAGTAGCGAAAGCCATGAAAGTTCCCACGGAGGGATGGATAATGCAAGATGGAACACCATGGCCAGGCAACAACACAAAAGATCATCCCGGTATGATCCAAGTTTTTCTAGGTCACAGTGGAGGCCTTGATGCCGAAGGGAATGAACTCCCCCGCCTAGTTTATGTATCTCGTGAGAAAAGACCAGGTTTCCAGCATCACAAGAAAGCCGGTGCCATGAATTCCTTGATTCGTGTCTCTGCAGTGCTTACAAATGCTCCATTCATGTTGAACTTGGATTGTGATCACTACATAAACAATAGCAAAGCAGCACGAGAAGCCATGTGTTTCCTTATGGACCCTCAAGTTGGAAAGAAAGTCTGTTATGTGCAATTTCCACAAAGATTCGATGGAATAGATAGGCATGATCGTTATGCCAACAGAAACACAGTCTTCTTTGATATTAACATGCGAGGTTTAGATGGAATTCAGGGACCCGTATATGTTGGCACAGGCTGCGTCTTTAGGAGGCAAGCTTTATATGGTTATGAACCCCCAAAAGGTCCTAAGCGCCCAAAAATGGTAAGCTGCGATTGTTGTCCATGCTTTGGACGTCGCAAGAAGCTTAAGAGCTCTAAAAGTGGGGTAGATGAAGATGCTGCAGTGATGGAAGATGACAAGGAGCTACTGATGTCGCAAATGAATTTTGAAAAGAAATTTGGACACTCATCAATTTTTGTTACCTCAACTTTGATGGAAGAAGGCGGTGTTCCACCCTCCTCCGGTCCAGCAGCCCTGCTTAAGGAAGCAATTCATGTTATCAGTTGTGGTTATGAAGACAAAACCGAATGGGGTACCGAGCTGGGCTGGATTTACGGTTCTATCACAGAAGATATTCTAACAGGTTTCAAAATGCATTGTCGTGGCTGGAGATCTATATACTGCATGCCAAAGAGACCTGCATTTAAGGGTACAGCTCCCATCAATTTGTCTGATCGGCTGAACCAGGTGCTTCGGTGGGCGCTCGGGTCCATTGAAATTTTTTTCAGCAACCACTGCCCTGTTTGGTATGGCTATAAGGGTGGAAAGCTAAAGTGGCTAGAGAGATTTGCATATGTCAACACCACTGTCTACCCCTTCACTTCAATACCACTTCTTGCCTACTGTACCCTCCCTGCAATCTGCCTGCTTACGGATAAGTTTATCATGCCACCGATCAGCACATTTGCAAGTTTCTATTTCATTGCATTGTTTCTTTCCATTTTTGCTACGGGTATTCTTGAACTTAAATGGAGTGGAGTTAGCATTGAGGAATGGTGGAGAAATGAGCAGTTCTGGGTCATTGGTGGTATTTCAGCTCATCTATTTGCTGTTGTACAAGGTCTATTGAAGGTTTTGGCTGGAATTGATACTAGCTTCACAGTTACATCCAAGGCAACAGATGACGAAGACTTTGGAGAATTATATGCCTTCAAATGGACCACTCTGCTAATCCCTCCCACAACTATTTTGATCATCAACCTTGTTGGTGTTGTTGCAGGCATCTCAGATGCCATAAATAATGGCTATCAATCATGGGGACCTCTATTTGGGAAGCTTTTCTTTGCCTTCTGGGTGATTGTTCATCTCTACCCATTCCTTAAGGGTTTGATGGGCCGACAAAACCGCACACCGACTATAGTCGTCATATGGTCGGTGCTGTTGGCTTCAATCTTCTCCTTGCTTTGGGTCCGAATTGATCCGTTTGTGATGAAAACAAAGGGACCTGATACAAAGCAATGTGGACTAAATTGCTGA 3096 44.12 MEASAGLVAGSHNRNELVVIHGHEEPKPLKNLDGQVCEICGDEVGLTVDGDLFVACNECGFPVCRPCYEYERREGSQLCPQCKTRYKRLKGSPRVEGDDDEEDIDDIEHEFNIDDERNNHSHLAEAMLHGKMSYGRGLDDDENAQYGRTQPVNGELPLSSQGYGEQMLSSSLHKRVHPYPVSEPGSARWDEKREGWKDRMDDWKLQQGNLGPEPDDANDPDMAMNDAARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRILNPVHDALGLWLTSVICEIWFAFSWILDQFPKWFPIDRETYLDRLTLRYEREDEPNLLAPVDIFVSTVDPMKEPPLVTANTILSILAMDYPVDKVSCYVSDDGASMLTFEAMSETAEFARKWVPFCKKFSIEPRAPEMYFCEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINAQVAKAMKVPTEGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNSLIRVSAVLTNAPFMLNLDCDHYINNSKAAREAMCFLMDPQVGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMRGLDGIQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCPCFGRRKKLKSSKSGVDEDAAVMEDDKELLMSQMNFEKKFGHSSIFVTSTLMEEGGVPPSSGPAALLKEAIHVISCGYEDKTEWGTELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSNHCPVWYGYKGGKLKWLERFAYVNTTVYPFTSIPLLAYCTLPAICLLTDKFIMPPISTFASFYFIALFLSIFATGILELKWSGVSIEEWWRNEQFWVIGGISAHLFAVVQGLLKVLAGIDTSFTVTSKATDDEDFGELYAFKWTTLLIPPTTILIINLVGVVAGISDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVMKTKGPDTKQCGLNC 1031
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2078387 2083254 + CmaCh10G004570.1 Cma10g00457 301773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00457 1031 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Cma10g00457 1031 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Cma10g00457 1031 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Cma10g00457 1031 Pfam Cellulose synthase 326 1025 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cma10g00457 1031 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 431 617 IPR029044 -
Cma10g00457 1031 SUPERFAMILY RING/U-box 21 107 - -
Cma10g00457 1031 MobiDBLite consensus disorder prediction 174 194 - -
Cma10g00457 1031 SUPERFAMILY Nucleotide-diphospho-sugar transferases 339 855 IPR029044 -
Cma10g00457 1031 Pfam Zinc-binding RING-finger 27 103 IPR027934 -
Cma10g00457 1031 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] 1 1031 - -
Cma10g00457 1031 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1031 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00468 Cma-Chr9:2053465 Cma10g00457 Cma-Chr10:2078387 0 dispersed
Cma09g01181 Cma-Chr9:7489487 Cma10g00457 Cma-Chr10:2078387 0 dispersed
Cma10g00457 Cma-Chr10:2078387 Cma17g01379 Cma-Chr17:9205889 0 dispersed
Cma16g00531 Cma-Chr16:2712426 Cma10g00457 Cma-Chr10:2078387 1.95E-106 dispersed
Cma16g00532 Cma-Chr16:2715744 Cma10g00457 Cma-Chr10:2078387 1.06E-112 dispersed
Cma20g00601 Cma-Chr20:2821210 Cma10g00457 Cma-Chr10:2078387 7.15E-139 dispersed
Cma20g00936 Cma-Chr20:4622665 Cma10g00457 Cma-Chr10:2078387 0 dispersed
Cma10g00457 Cma-Chr10:2078387 Cma11g00448 Cma-Chr11:2192739 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00457 K10999 - csv:101214842 2041.16