Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00459 ATGCAGCAAGGTGATCAGACGGTTCTAAGCTTGAGACCTGGTGGCGGTCGACCTAGACTCCTTGGTCCTCGCTTTGAGCTTTCATCCTCATCTTCCTCATCATCTTCATCTTCTTTTGCCTTTGGTTCATTTTCCTCTGATCTCCCTTCCCTCCGTCCTCATGGCGCTTCTTCCTCTTCCTTTTCTGTAAAGGCTGGAGATTCACGGTTTGAGGGTCGTGAGCGTGTTCGGTATACCCGAGATCAGCTTTTGCAGCTTCAGGAAGCCGTGGAAGTTCCAGATGATATACTAAAAATTAAACGGGATATTGAAGTGGAAATTTTTGGCGAGGAACAAAGTTGGAGTCGTGGAGAGAGCAATCAACTTAATCTGTCTCAGAATCGCTATTCTGAGCCTGACAATCGTGACTGGCGTGGCCGTTCTGCCCAATTTTCTTCTTCTGGAGAGGATAGGTCCAGGGAAACAATTCGGGATAGAGATTTTGGTGGTCATTTTGACTCTAGACAGCAAGATGCAAATCAATTGAATCGTCAAGATCCTCACTCATCTTGGACCCGAACCACTCCTAACCAAGGGGGAGGACCCCCTGCTTTAATCAAAGCTGAGGTACCATGGTCAGCCAGGAGAGGAACTCTCTCTGACAAGGATCGTGTCTTGAAGACTGTAAAGGGGATATTGAACAAGCTAACACCAGAAAAGTTCGATCTCCTTAAGGGTCAGCTAATTGACTCTGGAATCACCTCCGCTGATATTTTGAAGGATGTCATTTCACTTATTTTTGACAAGGCCGTTCTTGAACCCACATTTTGCCCCATGTATGCTCAATTATGTTCCGATCTGAATCAGAAGCTGCCACAATTTCCGTCTGATGAACCTGGTGGTAGAGAAGTTACTTTTAAACGAGTCCTCTTAAATATCTGTCAGGAGGCTTTTGAAGGTGCTGACAAGTTGAGGGAAGAGCTTAGGCAGATGACTGCCCCTGAGCAAGAGAGCGAACGCAGGGATAAAGACAGACTTTTGAAACTTCGTACTCTTGGAAATATTCGATTAATTGGAGAGCTTCTGAAGCAAAAGATGGTGCCTGAGAAAATCGTCCACCACATCGTGCAGGAACTTTTAGGACCAGATAACAAATCTTGTCCTGCAGAAGAAAATGTTGAGGCCATCTGTCAATTCTTTAACACCATAGGTAAGCAGCTAGACGAGAACACTAAGTCACGACGTATAAATGACATGTACTTTGGCCGACTGAAAGAACTGACCACACACACTCAGTTGGCCCCACGACTGAAGTTCATGGTTCGTGATGTTCTTGAATTGCGTGCCAACAATTGGGTTCCTAGGCGTGAAGAGGTTAAAGCCAAAACTATTACTGAAATACATACAGAGGCAGAAAAAAATCTGGGACTACGTCCTGGTGCTACTGTTAATATGAGAAATAATCGTGGCGTTGTGTCTGGTTCTCCTGGGAACACCAGCCCTGGGGGCTTTCCTATCAATCGACCTGGTTTTGGGGGTATGATGCCTGGCATGCCAGGAACTAGGAAGATGCCTGGTATGCCAGGCATGGATAATGACAATTGGGAGGTACATAGGACCCGACCTATACCAAGGGGGGCAGATGGATCTGGGCGTGGCTCAGCATCGTTCGCTGGCAAAGGATCAGCGTTGAATGCAAGGCTACTTCCCCAGGGTACTGGTGGGCTTATTAGTAATAAGAATAGTGCTCTATTGCAGGGTGCAGGTGCAACTACTACTCGTCCTGTTAACTTTGGTCATGGGTTAGAGCCCTCTGGTCAGGTTCATAAACCTATTGCCGCAGCAACAGTTCCTCCACCTGCAGAGCGACCACAGATTCCAGCTGCATCTTTAAAACAAGATGACCTCAGAAAGAAAACTCACTCTCTTCTTGAAGAATATTTCAGTATCCGGATTTTGGATGAAGCTTTACAGTGTGTGGAAGAACTCATGACACCAACTTACCACCCTGAGGTTGTAAAAGAAGCCATTTCCTTGGCCCTAGAGAAAAGCCCACCATGTGTTGAAGCAGTTGTAAAGTTTCTGGACTATTTACTCTCCAGGAAGGTTTTTACAGCTAGTGACGTTGGGACTGGATGCTTGCTTTATGCTTCCATGCTCGACGACGCAGGCATTGATTTACCAAAAGCACCCATCAATTTTGGTGAGATAATTGGTAAACTTGTTATATCTGGCGGTTTGGATTTTCAGGTGGTGAAAGAGGCCATTAAGAAGGTGGAAGACGACAGGTTTAGGAAAGATATATTTGATGCTGTTTTGAAGACGATTAGTTCTAATGTGTCTGGACAAGGATTATTGGACTCGTTGGCATCCGATATCGAAGGCTGTCGAAGTCTGGCATATTAA 2385 45.66 MQQGDQTVLSLRPGGGRPRLLGPRFELSSSSSSSSSSSFAFGSFSSDLPSLRPHGASSSSFSVKAGDSRFEGRERVRYTRDQLLQLQEAVEVPDDILKIKRDIEVEIFGEEQSWSRGESNQLNLSQNRYSEPDNRDWRGRSAQFSSSGEDRSRETIRDRDFGGHFDSRQQDANQLNRQDPHSSWTRTTPNQGGGPPALIKAEVPWSARRGTLSDKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKDVISLIFDKAVLEPTFCPMYAQLCSDLNQKLPQFPSDEPGGREVTFKRVLLNICQEAFEGADKLREELRQMTAPEQESERRDKDRLLKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPDNKSCPAEENVEAICQFFNTIGKQLDENTKSRRINDMYFGRLKELTTHTQLAPRLKFMVRDVLELRANNWVPRREEVKAKTITEIHTEAEKNLGLRPGATVNMRNNRGVVSGSPGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVHRTRPIPRGADGSGRGSASFAGKGSALNARLLPQGTGGLISNKNSALLQGAGATTTRPVNFGHGLEPSGQVHKPIAAATVPPPAERPQIPAASLKQDDLRKKTHSLLEEYFSIRILDEALQCVEELMTPTYHPEVVKEAISLALEKSPPCVEAVVKFLDYLLSRKVFTASDVGTGCLLYASMLDDAGIDLPKAPINFGEIIGKLVISGGLDFQVVKEAIKKVEDDRFRKDIFDAVLKTISSNVSGQGLLDSLASDIEGCRSLAY 794
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2086085 2092817 + CmaCh10G004590.1 Cma10g00459 301775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00459 794 MobiDBLite consensus disorder prediction 167 192 - -
Cma10g00459 794 SUPERFAMILY ARM repeat 624 782 IPR016024 -
Cma10g00459 794 Gene3D - 622 785 - -
Cma10g00459 794 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 3 792 IPR045208 GO:0003743
Cma10g00459 794 MobiDBLite consensus disorder prediction 25 44 - -
Cma10g00459 794 MobiDBLite consensus disorder prediction 116 130 - -
Cma10g00459 794 SMART ma3_7 629 741 IPR003891 -
Cma10g00459 794 Pfam MA3 domain 629 741 IPR003891 -
Cma10g00459 794 Pfam MIF4G domain 219 444 IPR003890 GO:0003723|GO:0005515
Cma10g00459 794 MobiDBLite consensus disorder prediction 150 166 - -
Cma10g00459 794 SUPERFAMILY ARM repeat 213 447 IPR016024 -
Cma10g00459 794 PANTHER MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 3 792 - -
Cma10g00459 794 Gene3D - 211 445 - -
Cma10g00459 794 MobiDBLite consensus disorder prediction 116 198 - -
Cma10g00459 794 MobiDBLite consensus disorder prediction 1 44 - -
Cma10g00459 794 ProSiteProfiles MI domain profile. 628 750 IPR003891 -
Cma10g00459 794 SMART if4_15 219 444 IPR003890 GO:0003723|GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00459 Cma11g00450 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00459 Cma-Chr10:2086085 Cma17g00068 Cma-Chr17:318062 1.35E-08 dispersed
Cma01g01675 Cma-Chr1:11433259 Cma10g00459 Cma-Chr10:2086085 0 wgd
Cma10g00459 Cma-Chr10:2086085 Cma11g00450 Cma-Chr11:2201267 0 wgd
Cma10g00459 Cma-Chr10:2086085 Cma09g00401 Cma-Chr9:1700705 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00459 K03260 - csv:101207520 1327.77