Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00467 ATGGCGGAGCGCCAATGTTTTGAAACTGACCAACTTGGAAGCTCGAAGGTTACTGCTGGGCAAGAGGACGACGAAGAAGAAATGGAAGATTCGGAGGATGAATCAGAGGTGGAGTTGGAAGATGGAGGAGCGTTGAGTGAGTTGCAACCGATTGAGTTGAGGATCGATTCGTCGGTTACTGAAGCTGCGGCGAGGGAGTCTCCATCTGAAACCCTAACGGCGCCTTCTGCGAATCACTCCTCGGAGAACGGTTTGCCCGTCGATTCTGCTGCGCAGTCACTCGAAGAAGCTGAATTGAAGCGATCTCCATCTTCCTGCCATGAGCCTTTGGCTGTTGAAGCAACCCAGACAGATAAGGTGCAAGAACAAAGCCAGCTTCAGTTGTCAATATATAAAGGACCTGATCCGGAACAATCACCAACTTCTGTTACCCAGTCTATCTCATCCTCCGCAAGTCCAAGTTTATCCAAACATAAACTGTCACCTAAGAAGGTCCAGAAAGAATGTAAGCCAGAGCCAAGCCAGAAAAATTCTTCCAACCATAAAACTGCATCATCGGTTCCCAATGTTAGGACACCTGCTTCTGATGGTTACAATTGGAGAAAATATGGTCAGAAGCAAGTGAAGAGTCCTAAGGGTTCGCGTAGTTATTACAAGTGTACATATTCTGAATGCTGTGCTAAGAAGATAGAATGTTGTGATCACTCAGGCCATAGAACAGAGATTGTTTACAGGAGCCAACATAGTCACGATCCACCTAGGATGATTAGCAACCCCAAGGAAAGACAGCTTGTGCCATATGTTGAGCCTGTGGTTAAGCAAATCATTACACAACATACCAGAAGAGTAATTAATGATTCAGATCCTCCCACGCCTTCTAAAGAACCTTCACGGGAAACAGCTTTAGTCCTTGTAAGGAAACGACAGTACTCGAGTGACTCTGATGGAAATGATGAATTTAAAATCAAAGATGAGAATGACGGCGAACCTGAGACAAAACAAAAAGTTAAGAAAAGTAGTGCGGGATATTCAGGTACTCCCTTAAAACCTGGAAAGAAACCGAAATTTGTGGTGCATGCAGCGGGTGACGTGGGAATCTCGGGCGATGGATACAGGTGGCGCAAGTATGGTCAGAAAATGGTGAAAGGAAGTCCTCATCCTAGGAACTACTACCGATGTACCTCTGCTGGGTGTCCAGTCCGTAAGCATATTGAATCAGCAGTAGAAAATCCATATGCAGTGATTATAACATACAAGGGAGTTCATGATCACGACATGCCTGTACCGAAGAAACGACACAGTCCACCAAGTGCTCCTCGTGTAGCTGCTGCAGCTCCAGCCTCCATGAGCAATACGCAACCAAAGAAAACAAACTTAACCGAGAGCCAAATTTCTTCAACACAGTGGTCTGTGGATGCTGAAGGAGAGTTGACTGGTGAGGCCTTGGAGCTTGGAGGTGAGAAGGCAATGGAATCTGCTCGAACACTTTTGAGCATCGGATTTGAAATCAAGCCCTGCTAA 1521 46.02 MAERQCFETDQLGSSKVTAGQEDDEEEMEDSEDESEVELEDGGALSELQPIELRIDSSVTEAAARESPSETLTAPSANHSSENGLPVDSAAQSLEEAELKRSPSSCHEPLAVEATQTDKVQEQSQLQLSIYKGPDPEQSPTSVTQSISSSASPSLSKHKLSPKKVQKECKPEPSQKNSSNHKTASSVPNVRTPASDGYNWRKYGQKQVKSPKGSRSYYKCTYSECCAKKIECCDHSGHRTEIVYRSQHSHDPPRMISNPKERQLVPYVEPVVKQIITQHTRRVINDSDPPTPSKEPSRETALVLVRKRQYSSDSDGNDEFKIKDENDGEPETKQKVKKSSAGYSGTPLKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGSPHPRNYYRCTSAGCPVRKHIESAVENPYAVIITYKGVHDHDMPVPKKRHSPPSAPRVAAAAPASMSNTQPKKTNLTESQISSTQWSVDAEGELTGEALELGGEKAMESARTLLSIGFEIKPC 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2113706 2118074 - CmaCh10G004670.1 Cma10g00467 301783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00467 506 MobiDBLite consensus disorder prediction 116 159 - -
Cma10g00467 506 MobiDBLite consensus disorder prediction 161 175 - -
Cma10g00467 506 Pfam WRKY DNA -binding domain 369 424 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma10g00467 506 Pfam WRKY DNA -binding domain 196 250 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma10g00467 506 Gene3D WRKY domain 352 428 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma10g00467 506 Gene3D WRKY domain 178 254 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma10g00467 506 MobiDBLite consensus disorder prediction 424 469 - -
Cma10g00467 506 PANTHER WRKY TRANSCRIPTION FACTOR 32-RELATED 15 504 - -
Cma10g00467 506 MobiDBLite consensus disorder prediction 1 215 - -
Cma10g00467 506 SUPERFAMILY WRKY DNA-binding domain 363 427 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma10g00467 506 ProSiteProfiles WRKY domain profile. 362 427 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma10g00467 506 MobiDBLite consensus disorder prediction 308 354 - -
Cma10g00467 506 MobiDBLite consensus disorder prediction 280 299 - -
Cma10g00467 506 MobiDBLite consensus disorder prediction 176 193 - -
Cma10g00467 506 MobiDBLite consensus disorder prediction 62 88 - -
Cma10g00467 506 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 15 504 IPR044810 GO:0003700
Cma10g00467 506 SUPERFAMILY WRKY DNA-binding domain 192 253 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma10g00467 506 MobiDBLite consensus disorder prediction 446 469 - -
Cma10g00467 506 MobiDBLite consensus disorder prediction 311 336 - -
Cma10g00467 506 SMART WRKY_cls 367 426 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma10g00467 506 SMART WRKY_cls 194 252 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma10g00467 506 MobiDBLite consensus disorder prediction 22 41 - -
Cma10g00467 506 ProSiteProfiles WRKY domain profile. 195 253 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00467 Cma11g00458 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00467 Cma-Chr10:2113706 Cma14g00032 Cma-Chr14:149735 2.66E-15 dispersed
Cma10g00467 Cma-Chr10:2113706 Cma11g00458 Cma-Chr11:2235976 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35718 PF03106 WRKY 1.60E-23 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00467 - - bhj:120071353 759.599