Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma10g00467 | ATGGCGGAGCGCCAATGTTTTGAAACTGACCAACTTGGAAGCTCGAAGGTTACTGCTGGGCAAGAGGACGACGAAGAAGAAATGGAAGATTCGGAGGATGAATCAGAGGTGGAGTTGGAAGATGGAGGAGCGTTGAGTGAGTTGCAACCGATTGAGTTGAGGATCGATTCGTCGGTTACTGAAGCTGCGGCGAGGGAGTCTCCATCTGAAACCCTAACGGCGCCTTCTGCGAATCACTCCTCGGAGAACGGTTTGCCCGTCGATTCTGCTGCGCAGTCACTCGAAGAAGCTGAATTGAAGCGATCTCCATCTTCCTGCCATGAGCCTTTGGCTGTTGAAGCAACCCAGACAGATAAGGTGCAAGAACAAAGCCAGCTTCAGTTGTCAATATATAAAGGACCTGATCCGGAACAATCACCAACTTCTGTTACCCAGTCTATCTCATCCTCCGCAAGTCCAAGTTTATCCAAACATAAACTGTCACCTAAGAAGGTCCAGAAAGAATGTAAGCCAGAGCCAAGCCAGAAAAATTCTTCCAACCATAAAACTGCATCATCGGTTCCCAATGTTAGGACACCTGCTTCTGATGGTTACAATTGGAGAAAATATGGTCAGAAGCAAGTGAAGAGTCCTAAGGGTTCGCGTAGTTATTACAAGTGTACATATTCTGAATGCTGTGCTAAGAAGATAGAATGTTGTGATCACTCAGGCCATAGAACAGAGATTGTTTACAGGAGCCAACATAGTCACGATCCACCTAGGATGATTAGCAACCCCAAGGAAAGACAGCTTGTGCCATATGTTGAGCCTGTGGTTAAGCAAATCATTACACAACATACCAGAAGAGTAATTAATGATTCAGATCCTCCCACGCCTTCTAAAGAACCTTCACGGGAAACAGCTTTAGTCCTTGTAAGGAAACGACAGTACTCGAGTGACTCTGATGGAAATGATGAATTTAAAATCAAAGATGAGAATGACGGCGAACCTGAGACAAAACAAAAAGTTAAGAAAAGTAGTGCGGGATATTCAGGTACTCCCTTAAAACCTGGAAAGAAACCGAAATTTGTGGTGCATGCAGCGGGTGACGTGGGAATCTCGGGCGATGGATACAGGTGGCGCAAGTATGGTCAGAAAATGGTGAAAGGAAGTCCTCATCCTAGGAACTACTACCGATGTACCTCTGCTGGGTGTCCAGTCCGTAAGCATATTGAATCAGCAGTAGAAAATCCATATGCAGTGATTATAACATACAAGGGAGTTCATGATCACGACATGCCTGTACCGAAGAAACGACACAGTCCACCAAGTGCTCCTCGTGTAGCTGCTGCAGCTCCAGCCTCCATGAGCAATACGCAACCAAAGAAAACAAACTTAACCGAGAGCCAAATTTCTTCAACACAGTGGTCTGTGGATGCTGAAGGAGAGTTGACTGGTGAGGCCTTGGAGCTTGGAGGTGAGAAGGCAATGGAATCTGCTCGAACACTTTTGAGCATCGGATTTGAAATCAAGCCCTGCTAA | 1521 | 46.02 | MAERQCFETDQLGSSKVTAGQEDDEEEMEDSEDESEVELEDGGALSELQPIELRIDSSVTEAAARESPSETLTAPSANHSSENGLPVDSAAQSLEEAELKRSPSSCHEPLAVEATQTDKVQEQSQLQLSIYKGPDPEQSPTSVTQSISSSASPSLSKHKLSPKKVQKECKPEPSQKNSSNHKTASSVPNVRTPASDGYNWRKYGQKQVKSPKGSRSYYKCTYSECCAKKIECCDHSGHRTEIVYRSQHSHDPPRMISNPKERQLVPYVEPVVKQIITQHTRRVINDSDPPTPSKEPSRETALVLVRKRQYSSDSDGNDEFKIKDENDGEPETKQKVKKSSAGYSGTPLKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGSPHPRNYYRCTSAGCPVRKHIESAVENPYAVIITYKGVHDHDMPVPKKRHSPPSAPRVAAAAPASMSNTQPKKTNLTESQISSTQWSVDAEGELTGEALELGGEKAMESARTLLSIGFEIKPC | 506 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2113706 | 2118074 | - | CmaCh10G004670.1 | Cma10g00467 | 301783 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma10g00467 | 506 | MobiDBLite | consensus disorder prediction | 116 | 159 | - | - | |
Cma10g00467 | 506 | MobiDBLite | consensus disorder prediction | 161 | 175 | - | - | |
Cma10g00467 | 506 | Pfam | WRKY DNA -binding domain | 369 | 424 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma10g00467 | 506 | Pfam | WRKY DNA -binding domain | 196 | 250 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma10g00467 | 506 | Gene3D | WRKY domain | 352 | 428 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma10g00467 | 506 | Gene3D | WRKY domain | 178 | 254 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma10g00467 | 506 | MobiDBLite | consensus disorder prediction | 424 | 469 | - | - | |
Cma10g00467 | 506 | PANTHER | WRKY TRANSCRIPTION FACTOR 32-RELATED | 15 | 504 | - | - | |
Cma10g00467 | 506 | MobiDBLite | consensus disorder prediction | 1 | 215 | - | - | |
Cma10g00467 | 506 | SUPERFAMILY | WRKY DNA-binding domain | 363 | 427 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma10g00467 | 506 | ProSiteProfiles | WRKY domain profile. | 362 | 427 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma10g00467 | 506 | MobiDBLite | consensus disorder prediction | 308 | 354 | - | - | |
Cma10g00467 | 506 | MobiDBLite | consensus disorder prediction | 280 | 299 | - | - | |
Cma10g00467 | 506 | MobiDBLite | consensus disorder prediction | 176 | 193 | - | - | |
Cma10g00467 | 506 | MobiDBLite | consensus disorder prediction | 62 | 88 | - | - | |
Cma10g00467 | 506 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 15 | 504 | IPR044810 | GO:0003700 | |
Cma10g00467 | 506 | SUPERFAMILY | WRKY DNA-binding domain | 192 | 253 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma10g00467 | 506 | MobiDBLite | consensus disorder prediction | 446 | 469 | - | - | |
Cma10g00467 | 506 | MobiDBLite | consensus disorder prediction | 311 | 336 | - | - | |
Cma10g00467 | 506 | SMART | WRKY_cls | 367 | 426 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma10g00467 | 506 | SMART | WRKY_cls | 194 | 252 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma10g00467 | 506 | MobiDBLite | consensus disorder prediction | 22 | 41 | - | - | |
Cma10g00467 | 506 | ProSiteProfiles | WRKY domain profile. | 195 | 253 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma10g00467 | Cma11g00458 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma10g00467 | Cma-Chr10:2113706 | Cma14g00032 | Cma-Chr14:149735 | 2.66E-15 | dispersed | |
Cma10g00467 | Cma-Chr10:2113706 | Cma11g00458 | Cma-Chr11:2235976 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35718 | PF03106 | WRKY | 1.60E-23 | CL0274 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma10g00467 | - | - | bhj:120071353 | 759.599 |