Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00473 ATGGCGTTGCTGCGCAAATTGTTCTTCCGGAAGCCGCCCGATGGCCTTCTCGAGATCTGTGAAAGAGTTTACGTTTTTGATTGCTGTTTTACCACAGATTCGTGGAAGGAGAAGAATTATGAAGCTTACTTATGTGGAATAGTTGCTCAACTCAGAGAGCATTTAGCAGATGCATCGTTCTTGGTATTCAATTTTAGGAGATTAGAGATGCAAAGTCAGATGGGCGATATCTTATCGAAGTATGATATGACCATAATGGACTACCCTCAGCAGTACGAGGGTTGCCCAGTTCTGACAATGGAAGTGCTTCACCATTTTCTAAGATCATGTGAGAGTTGGCTTTCCCTTGGACAAAATAACGTTTTGCTAATGCACTGTGAGCGTGGTGGTTGGCCAGTTTTAGCTTTCATGCTTTCGGCTCTCTTGATTTTTAGGAAACAATATAGTGGGGAGCAAAGAACATTGGACATGGTTTACAGGCAGGCACCGCGTGAGCTTTTACATGTTTTGTCTCCTATGAATCCAGTTCCTTCCCAATTAAGATATCTTCAATACATTGCAAGGAGGAATGTAGCCTTAGAATGGCCACCTATGGACAGAGCTCTCACTTTGGATTGTATCATTTTGAGATTTATTCCAAATGTTGATGGAGAGGGTGGTTGCCGTCCAATATTTCGAATATATGGACAAGATCCTCTGCTCGTCAGTGATCGAGCTCCTAAAGTTCTGTATTCAACTCCAAAAAGAAGTAAAAATGTCCGTTCTTACAAACAGGTAGAATCAGAACTGGTTAAGATTGATATTAATTGCCATATTCAAGGAGATGTTGTTCTTGAGTGCATCAGTTTGCTTGACGACATGGAATCTGAAGAGATGATGTTCAGAGCAATGTTTAATACTGCTTTTATTCGCTCTAATATCTTAATTGTCAACCGTGAAGAGATCGACACTTTATGGAACGCTAAAGATAAATTTCCAAAAGAGTTTCGAGCAGAGATTCTTTTCTCTGAGATGGATGCTGGAACTTCTACTGTTCCAAATGATATACTTTGCATTGAGGAGGATGGTCTCCCCATTGAAGCATTTGCTAAAGTACAAGAGATCTTTAGTCATGTGGATTGGTTAGATCCCAAAGCAGATGTTGCCCTTAATATGCTTCATCAGATGAATGCCTTAAACATAGCCCAAGAAAAGACAGACAATAATTCTCTTTGGAGTACACAATTTAGTTCTTTACTTCAGTGTACAAGTCCCAGAAAACTTCCGCAGAAGTTCACATTGGAGAACACACTCTTCCTAGAGAAGGAAGAGTCTGTTCCAACATCTAAGTTTTCTCCGGATGCTGCTAAAACTGAACAGAACAATGAACCTGATTCAGTATTCCAACAGGTGCCTCGATCTTCAGAGTCTTTCCCACTTAACTATGACATTTTGCAAGATTCGCGGAATTCAGAGAGAAGCAATAGGACCTCACACAGTGCTTCGGTTGGAAGCCACTCATTTCTTGATTCTGAAGGAGAAACAGAGGTTTCTCATCTGAAAACTGCATCTTCATCTTTTCCGAATGCAGCATTGGCTGTTTCTCTTGCACCTGAATCTCTTCGCACTAAAAGTTTCCTTACAGGGACAACCATGCCACCACCTCCTCCTCTCCCCCAACTTTCCATGGATATTTCTGTTGCTAATTCTGTACCTTATCCTTCCCCTCCTCCAACTGCATCAGCACTTCCGTCTAATAACTTATCAACTCTAGGACCAGATAAATCTTCTCTCACCGAGGAAAGAAAAATCTATTCGAAGGATCAAAGTCAGTTATCAACCATTGGCCCTCCCCTGTCTGTAACCTCAGCAACTGCACCCTTAGTGCCTCAACCACCACCACCACCTCCGCCTCCACCTCTTCCTATGACGTCTAAACAGGATGAAAGTACTTCAACATCTCCATTTGTTCCTCCTCCACCACCACCACCTCTTCTTATGACATCTATGCAGGTTGGAAGTACTTCAACATCTTCTTCTGTTCCACCTCCGCCCCCACCTCTTCCGTTTAGACAGGTTGAATATACTTCAACATCTCCATCTGTTCCCCCTCCTCCACCACCGCCAACTTCCACCACAGGCTCCTCTTCAGCTGTTCCTTCTGCTCCCCCTCCTCCTACCCTTTCTGGGAGAGGGACTTCAAAATCTGGTGAACTATGTTCTGATTCTCTTCTCGAAAATGGTTTGTCTAGGTGTCCTCCGCCACCAAATAGTTATCCATTAGGTATAAAGGGACGGAGTTTGTCACGCACGATAAATTCAAGATCACATATAACCAAGAAACTTAAGCCATTGCATTGGTTAAAGTTATCTAAAGCAGTGCAAGGAAGCTTATGGGCTGAAACTCAAAAAACTGGTGAAGTTTCCAGGGCACCAGAGATTGACATGTCAGAGCTTGAAAGTCTTTTCTCAGCGGCAGTTCCTGCTCCTGATCTGCTCAAGAAGTCAGGTGGGCCTGGTTCAGTTGGGAATAAACCTGAGAAAGTACAACTGATTGATCATAGGCGAGCTTACAATTGTGAAATCATGCTTTCAAAGGTCAAGGTTCCTTTGCAAGATTTAATGAGTTCTGTGCTTGACCTTGAAGATGCAGCGCTGGATATCGATCAGGTTGAGAATCTTATTAAGTTTTGTCCGACAAAGGAGGAAATGGATTTACTCAAGGGCTACACCGGAGAAAAGGAGAAGCTTGGAAAATGTGAACAGTTCTTCTTAGAGTTGATGCAAGTACCTCGTGTTGAATGTAAACTTCGAGTTTTCTCATTCAAGATGCAGTTCAGCTGTCAGGTCACTGACCTCAAAAAAAGCTTGAACTTTGTTAACTCTGCTGCAGAAGAGATAAAAAGTTCAGTGAAGTTGAAGAGAGTCATGCAAACAATACTATCTCTAGGAAATGCTTTAAACCAGGGAACAGCGAGGGGCTCTGCTATAGGATTTAGGCTGGATAGCCTTCTTAAACTGACAGAAACTCGTGCACGAAACAACAAGATGACTCTAATGCATTATCTTTGCAAGATACTTGCTGACAAACTGCCAGAAGTTTTGGATTTTTCTAATGATCTTGCAAGCTTGGAGCCTGCATCAAAGGTACAATTGAAGATTTTGGCAGAGGAGATGCAAGCAATTAGCAAAGGGTTGGAGAAAATTGTTCAAGAATTGTCTACATCTGAAAATGATGGCCCTATATCCAATAATTTCCGAAAGGTTTTAAAGGAGTTCCTTCGTTTTGCTGAAGCTGAAGTCAGAACTTTGGCTTCGCTATACTCTAGCGTGGGTAGAAATGTAGATTCTTTGATTCTTTATTTTGGAGAAGATCCAGCTCGCTGCCCCTTTGAGCAAGTTATGTCAACCTTATGCAACTTTGTGAGTATGTTTAACCGAGCCCACGAGGAAAACTGCAAGCAGATAGAGCTTGAATTGAAGAAAGCAACTGAAAAGGAAAAATCAAAGACGGGGCACTTGCACAAAAAGACGAGGACGAAGAAGTTATCACGCTCCCAGGTTGAGATTGGCAATGTCAAGTAA 3564 42.31 MALLRKLFFRKPPDGLLEICERVYVFDCCFTTDSWKEKNYEAYLCGIVAQLREHLADASFLVFNFRRLEMQSQMGDILSKYDMTIMDYPQQYEGCPVLTMEVLHHFLRSCESWLSLGQNNVLLMHCERGGWPVLAFMLSALLIFRKQYSGEQRTLDMVYRQAPRELLHVLSPMNPVPSQLRYLQYIARRNVALEWPPMDRALTLDCIILRFIPNVDGEGGCRPIFRIYGQDPLLVSDRAPKVLYSTPKRSKNVRSYKQVESELVKIDINCHIQGDVVLECISLLDDMESEEMMFRAMFNTAFIRSNILIVNREEIDTLWNAKDKFPKEFRAEILFSEMDAGTSTVPNDILCIEEDGLPIEAFAKVQEIFSHVDWLDPKADVALNMLHQMNALNIAQEKTDNNSLWSTQFSSLLQCTSPRKLPQKFTLENTLFLEKEESVPTSKFSPDAAKTEQNNEPDSVFQQVPRSSESFPLNYDILQDSRNSERSNRTSHSASVGSHSFLDSEGETEVSHLKTASSSFPNAALAVSLAPESLRTKSFLTGTTMPPPPPLPQLSMDISVANSVPYPSPPPTASALPSNNLSTLGPDKSSLTEERKIYSKDQSQLSTIGPPLSVTSATAPLVPQPPPPPPPPPLPMTSKQDESTSTSPFVPPPPPPPLLMTSMQVGSTSTSSSVPPPPPPLPFRQVEYTSTSPSVPPPPPPPTSTTGSSSAVPSAPPPPTLSGRGTSKSGELCSDSLLENGLSRCPPPPNSYPLGIKGRSLSRTINSRSHITKKLKPLHWLKLSKAVQGSLWAETQKTGEVSRAPEIDMSELESLFSAAVPAPDLLKKSGGPGSVGNKPEKVQLIDHRRAYNCEIMLSKVKVPLQDLMSSVLDLEDAALDIDQVENLIKFCPTKEEMDLLKGYTGEKEKLGKCEQFFLELMQVPRVECKLRVFSFKMQFSCQVTDLKKSLNFVNSAAEEIKSSVKLKRVMQTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKILADKLPEVLDFSNDLASLEPASKVQLKILAEEMQAISKGLEKIVQELSTSENDGPISNNFRKVLKEFLRFAEAEVRTLASLYSSVGRNVDSLILYFGEDPARCPFEQVMSTLCNFVSMFNRAHEENCKQIELELKKATEKEKSKTGHLHKKTRTKKLSRSQVEIGNVK 1187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2140987 2150754 + CmaCh10G004730.1 Cma10g00473 301789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00473 1187 SMART PTEN_C2_2 197 337 IPR014020 -
Cma10g00473 1187 Coils Coil 1139 1159 - -
Cma10g00473 1187 MobiDBLite consensus disorder prediction 562 757 - -
Cma10g00473 1187 Pfam Formin Homology 2 Domain 772 1139 IPR015425 -
Cma10g00473 1187 MobiDBLite consensus disorder prediction 1157 1187 - -
Cma10g00473 1187 MobiDBLite consensus disorder prediction 721 736 - -
Cma10g00473 1187 MobiDBLite consensus disorder prediction 692 720 - -
Cma10g00473 1187 PANTHER FORMIN-J 1 679 - -
Cma10g00473 1187 PANTHER FORMIN-J 670 1172 - -
Cma10g00473 1187 MobiDBLite consensus disorder prediction 444 465 - -
Cma10g00473 1187 Gene3D Protein tyrosine phosphatase superfamily 15 199 IPR029021 -
Cma10g00473 1187 SMART it6_source 765 1187 IPR015425 -
Cma10g00473 1187 MobiDBLite consensus disorder prediction 438 465 - -
Cma10g00473 1187 MobiDBLite consensus disorder prediction 481 503 - -
Cma10g00473 1187 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Cma10g00473 1187 MobiDBLite consensus disorder prediction 601 619 - -
Cma10g00473 1187 Gene3D - 200 340 - -
Cma10g00473 1187 MobiDBLite consensus disorder prediction 620 637 - -
Cma10g00473 1187 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Cma10g00473 1187 MobiDBLite consensus disorder prediction 488 503 - -
Cma10g00473 1187 SUPERFAMILY Formin homology 2 domain (FH2 domain) 697 1155 - -
Cma10g00473 1187 Pfam C2 domain of PTEN tumour-suppressor protein 199 337 IPR014020 -
Cma10g00473 1187 ProSiteProfiles Formin homology-2 (FH2) domain profile. 765 1164 IPR015425 -
Cma10g00473 1187 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 186 IPR029021 -
Cma10g00473 1187 Gene3D Formin, FH2 domain 763 1149 IPR042201 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00473 Cma-Chr10:2140987 Cma13g01093 Cma-Chr13:8230983 6.29E-138 dispersed
Cma01g01662 Cma-Chr1:11366769 Cma10g00473 Cma-Chr10:2140987 0 wgd
Cma10g00473 Cma-Chr10:2140987 Cma11g00467 Cma-Chr11:2260206 0 wgd
Cma10g00473 Cma-Chr10:2140987 Cma09g00412 Cma-Chr9:1750408 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00473 - - cmax:111485750 2191.77