Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00478 ATGGCGGAGAAGGACAGAGACGGTCATTCTGGAGTGCTCCATGGGAAGTATGAGTTAGGTCGGCTTCTAGGGCATGGAACTTTTGCTAAGGTTTACCATGCCCGGAACTTGCAGACTGGGACGAACATGGCGATGAAGGTTGTTGGGAAGGAGAAGGTCATAAAAGTAGGTATGATGGAGCAGATCAAGAGAGAGATCTCTGTGATGAAGATGGTGAAGCATCCGAATATTGTCGAGCTTCATGAGGTTATGGCGAGCAAATCGAAGATCTATTTCGCTATGGAGCTTGTTCGAGGCGGGGAACTGTTCTCCAAAATTGCTAGAGGTCGATTGAGAGAGGATGTGGCTAGAGTTTACTTTCAGCAGCTGATTTCTGCGATCGATTTCTGCCACAGTCGGGGGGTTTACCATCGGGACCTCAAACCGGAGAATCTTCTTCTCGACGACGACGGAAACCTTAAGGTAACTGATTTTGGACTCAGCGCATTTTCAGAGCACTTGAAACAGGATGGATTGTTGCACACAACTTGTGGTACGCCAGCGTACGTTGCGCCGGAGGTTATCGGGAAGAACGGATACAACGGCGCCAAAGCCGATCTGTGGTCATGTGGAGTCATCCTTTACGTTCTTCTGGCAGGATTTCTCCCATTTCAGGACGACAATATTATGGCCATGTACAGGAAGATTTACAAGGGAGACTTCAAATGCCCGCCGTGGTTCTCATCGGATGCCCGTCGACTAATCACCAAACTCCTCGATCCAAATCCGAATACCAGAATTACAACTTCGAAGATCATGGAGTCGTCCTGGTTCAGGAAATCTGTACCAAGAACTGTGACGACGAAAGAGGAGCAGGAATTCGACGAGAGCAACGAGAAACTAAAGCAATCTGAGACTCTGAATGCATTCCACATAATTTCGTTATCAGAAGGGTTCGATTTGTCGCCGTTGTTCGAGGAGAAGAAGAGGGAAGAAAAAGAGGAGCTGAGATTTGCGACGACGAGGCCGGCAAGCAGTGTGATATCGAAGCTGGAGGAGGTTGCGAAAGCGGGGAAATTCAACGTCAAAAAGAGCGAATCGAGAGTCAGACTACAGGGCCAGGAGTGCGGAAGAAAAGGGAAACTGGCGGTGGCTGCGGAGATCTTCGCCTTGACGCCGTCGTTTCTGGTGGTGGAGGTGAAGAAGGATCATGGCGACACTCTCGAATACAACCAATTCTGCAGCAAAGAGCTCCGGCCGGCACTCAAAGACATTGTCTGGACATCACCGACGGAGAACTCCATGCCGGCTTGA 1293 49.65 MAEKDRDGHSGVLHGKYELGRLLGHGTFAKVYHARNLQTGTNMAMKVVGKEKVIKVGMMEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMELVRGGELFSKIARGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDDDGNLKVTDFGLSAFSEHLKQDGLLHTTCGTPAYVAPEVIGKNGYNGAKADLWSCGVILYVLLAGFLPFQDDNIMAMYRKIYKGDFKCPPWFSSDARRLITKLLDPNPNTRITTSKIMESSWFRKSVPRTVTTKEEQEFDESNEKLKQSETLNAFHIISLSEGFDLSPLFEEKKREEKEELRFATTRPASSVISKLEEVAKAGKFNVKKSESRVRLQGQECGRKGKLAVAAEIFALTPSFLVVEVKKDHGDTLEYNQFCSKELRPALKDIVWTSPTENSMPA 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2169579 2170871 + CmaCh10G004780.1 Cma10g00478 301794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00478 430 PANTHER - 8 428 - -
Cma10g00478 430 SUPERFAMILY Protein kinase-like (PK-like) 13 286 IPR011009 -
Cma10g00478 430 ProSitePatterns Protein kinases ATP-binding region signature. 23 50 IPR017441 GO:0005524
Cma10g00478 430 CDD STKc_SnRK3 16 270 - -
Cma10g00478 430 Gene3D Phosphorylase Kinase; domain 1 14 98 - -
Cma10g00478 430 ProSiteProfiles NAF domain profile. 295 319 IPR018451 GO:0007165
Cma10g00478 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Cma10g00478 430 Gene3D Kinase associated domain 1, KA1 295 421 - -
Cma10g00478 430 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 8 428 - -
Cma10g00478 430 CDD CIPK_C 301 416 - -
Cma10g00478 430 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00478 430 Pfam NAF domain 298 357 IPR004041 GO:0007165
Cma10g00478 430 SMART serkin_6 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00478 430 Pfam Protein kinase domain 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00478 430 Gene3D Transferase(Phosphotransferase) domain 1 99 277 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00478 Cma-Chr10:2169579 Cma13g00599 Cma-Chr13:5887321 0 dispersed
Cma14g01055 Cma-Chr14:5577570 Cma10g00478 Cma-Chr10:2169579 1.56E-172 dispersed
Cma01g01660 Cma-Chr1:11355900 Cma10g00478 Cma-Chr10:2169579 0 wgd
Cma10g00478 Cma-Chr10:2169579 Cma11g00469 Cma-Chr11:2275952 0 wgd
Cma10g00478 Cma-Chr10:2169579 Cma05g01235 Cma-Chr5:9485136 0 wgd
Cma10g00478 Cma-Chr10:2169579 Cma09g00414 Cma-Chr9:1766505 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68838 PF00069 Pkinase 1.90E-73 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00478 - K07198 csv:101211847 820.461