Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00479 ATGGCAACAGTCCCTCGTTTTGGATGCCTGAAGGGGCTGATGTTTTCGAGTCCGAGATATGGAGCTTCCAAACCGGAAAATTTCCTCATTCAGATTAACCATCACCACCACCCCCACTGCCCGGGTAAGAGAACCACCATGAAACAGGAGTTGTCAAGTATGATTTCAAAAGCCAAGACGAATGCAATTGGGGAAGATTGCATCACTTGCCCATTCCCTGCCAGTGGATGTAGTAGACAAGGAAGGAGTTTAACCTCAAAATTCAAAGGTGTTGTGCTTCAGCAGAATGGCCACTGGGGTACTCAAATTTATGCTAATCACCATCGTATTTGGCTCGGCACATTCAAGTCGGAAGACGAGGCAGCCATGGCTTATGATAGTGCAGCTATCAGAATCAGGAGTGGAGATTGTCATAGAAACTTTCCTTGGACCAAATTCACTATTGAAGAGCCTAACTTTCAGAATCTTTACACTACAGCAGCTTTGCTTAGTATGTTAAAAGACAGTTCTTACAGAACTAAATTTGCTGAGTATTTGAGGGATTGTTTGGAAAGCGCACAAACAGCCAGTCCCTCTGCAGAAAAGCTACATGACAATGGACGGACATCTATTAAGCAACTTTTTCAAAAGGAGCTAACACCGAGCGATGTTGGTAAGTTAAACAGATTGGTCATCCCAAAGAAATACGCTGTTAAATACTTCCCTCACATACCAGCTAGCACGATAGATAACGTGAAACGTGTTGATGATGATTGTGATGTGCAGCTAGTATTATTTGACAAAATGATGAGACAATGGAAATTTCGATACTGTTACTGGAAAAGCAGCCAGAGCTACGTTTTTACGCGAGGTTGGAATCGGTTTGTGAAAGAAAAACAACTGAAAGCTAATGACACAATAACTTTCTACTTGTGTGAAGCAGCAAAGGCAAGCGATGCTAACACTACATTCTGTGTGGTGGATGTTAAAAACCGTGACAACCATGGTAGCTTGACTGAGAATGAAATCACAAGCAGCGAAATGCAGCTAGATTTGAGTCATGAAGAAGTTAATGGATCGGTGTTGCCTAAGCATGCCGACGATGAACTAAATGATGATCTTGAAGTCTCAGGCTTCAAACTGTTTGGAGTGCATATTAAGGGGAAAAACTCCAAAAAGCAGCATGGCTCCACTGGCTGCTTTTGCCTTATTGGAGACTACGAGAGAGTGCTAAATGAAGTCTACGTTCATGTTCATGCCAATTTGAACCGAACTCAACCGGTTAAGAGGGATTGA 1275 42.67 MATVPRFGCLKGLMFSSPRYGASKPENFLIQINHHHHPHCPGKRTTMKQELSSMISKAKTNAIGEDCITCPFPASGCSRQGRSLTSKFKGVVLQQNGHWGTQIYANHHRIWLGTFKSEDEAAMAYDSAAIRIRSGDCHRNFPWTKFTIEEPNFQNLYTTAALLSMLKDSSYRTKFAEYLRDCLESAQTASPSAEKLHDNGRTSIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPHIPASTIDNVKRVDDDCDVQLVLFDKMMRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTITFYLCEAAKASDANTTFCVVDVKNRDNHGSLTENEITSSEMQLDLSHEEVNGSVLPKHADDELNDDLEVSGFKLFGVHIKGKNSKKQHGSTGCFCLIGDYERVLNEVYVHVHANLNRTQPVKRD 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2171824 2181901 - CmaCh10G004790.1 Cma10g00479 301795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00479 424 CDD B3_DNA 207 319 IPR003340 GO:0003677
Cma10g00479 424 PANTHER DNA-BINDING PROTEIN RAV1 47 379 - -
Cma10g00479 424 CDD AP2 86 144 IPR001471 GO:0003700|GO:0006355
Cma10g00479 424 Gene3D - 203 332 IPR015300 -
Cma10g00479 424 SUPERFAMILY DNA-binding domain 86 143 IPR016177 GO:0003677
Cma10g00479 424 Pfam B3 DNA binding domain 208 307 IPR003340 GO:0003677
Cma10g00479 424 ProSiteProfiles AP2/ERF domain profile. 87 142 IPR001471 GO:0003700|GO:0006355
Cma10g00479 424 SMART B3_2 208 323 IPR003340 GO:0003677
Cma10g00479 424 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 47 379 IPR044800 GO:0003700
Cma10g00479 424 SMART rav1_2 87 148 IPR001471 GO:0003700|GO:0006355
Cma10g00479 424 Gene3D AP2/ERF domain 86 143 IPR036955 GO:0003700|GO:0006355
Cma10g00479 424 Pfam AP2 domain 86 133 IPR001471 GO:0003700|GO:0006355
Cma10g00479 424 ProSiteProfiles B3 DNA-binding domain profile. 208 325 IPR003340 GO:0003677
Cma10g00479 424 SUPERFAMILY DNA-binding pseudobarrel domain 207 307 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00479 Cma-Chr10:2171824 Cma11g00827 Cma-Chr11:4146868 3.09E-98 dispersed
Cma11g00471 Cma-Chr11:2285257 Cma10g00479 Cma-Chr10:2171824 3.71E-10 transposed
Cma10g00479 Cma-Chr10:2171824 Cma11g00470 Cma-Chr11:2279209 8.82E-179 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35719 PF02362 B3 1.70E-25 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00479 K09287 - csv:101212246 565.074