Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00480 ATGCAGCCCTGTAGCAGAGAAATGCAAACCTTCAACTCTCTGTTAAACCACTCCCAAATCTCTCTCCAGGACCTCCACGCCGACGCTCCCCACCATTTGAATCCCCCACCACCGCAGATCCCGGCGTCTCAGCTCCACCATTTTGATCCCGCCGCTGCCGCCTCCCACGACGACTTCCTCGAGCAAATGCTCAACACAATCCCCTCCTGTTCCTGGCCCGACCTCAACCCTTCAAACCCTAAATCCCCTTGGGACCTTAACCCCATCAATAAGCCCTCCAGAGATATCTCCGACGACCACCACCAGAACCACATCGCTGCTACATCTCCGGCTGCCAAGGCCGCCGTCATGCTCCAGCAACAACTTCTCTTGAACAGAGGAATCTCCGTCTCCGCTGGAAATGGCGTCGCCGACCATGGTCTCCCACCTATGCCTCTCTCCCTCGGAAATGCCGACTTGGACCGCTCCCAAAACGACGTCGTCGAGGGATCCTGCTTCCGCACACCGAACTCGGGAGGTTCTATTCAATCGCATAGCTTCGGAGCTCCAGGGAACGGGTTGAGTCAAACTCCGGCCGGTGGTTCCGTCGGTGTTTCTCCATCTCAGCCGAAGCAGAAGGTCAGAGCTCGCAGAGGCCAAGCCACAGACCCACACAGTATTGCCGAAAGGCTTCGAAGAGAGAGAATTGCAGAGAGAATGAAAGCACTGCAAGAACTCGTTCCCAACGCAAACAAGACAGATAAGGCTTCAATGCTGGATGAGATCATCGACTACGTTAAATTCCTCCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGGTTGGGAGGTGCAGCTGCTGTGGCTCCTCTCGTTGCTGACGTGTCATCTGAGGGGGGCGGTGAGTGTATGCAAGGGAGTGGGGCTCAAGGTGGTCGGAATTCGAACAATGGCGGGGGTGGTGGAAACCAAACGGCGTCGTCGAATGATAGCATGACGGTGACGGAGCAGCAGGTGGCGAAGCTGATGGAGAAGGATATGGGATCGGCGATGCAGTATCTGCAGGGGAAAGGGTTGTGTCTTATGCCGATCTCTCTGGCGACGGCGATTTCGACATCCACGTGTCACACTAGGAATCCGATGATGAACGGCGGTGGTCAGCATCCGGTGATGGGGACGAACGGAGACGGGCCGACGTCGCCAAGCATGTCAGTGCTGACGGTGCAGTCGACGAGCATGGGGAACGGCTCCGTTAAGGATGCCGCCTCCGTATCGAAGCCGTGA 1260 56.75 MQPCSREMQTFNSLLNHSQISLQDLHADAPHHLNPPPPQIPASQLHHFDPAAAASHDDFLEQMLNTIPSCSWPDLNPSNPKSPWDLNPINKPSRDISDDHHQNHIAATSPAAKAAVMLQQQLLLNRGISVSAGNGVADHGLPPMPLSLGNADLDRSQNDVVEGSCFRTPNSGGSIQSHSFGAPGNGLSQTPAGGSVGVSPSQPKQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADVSSEGGGECMQGSGAQGGRNSNNGGGGGNQTASSNDSMTVTEQQVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHTRNPMMNGGGQHPVMGTNGDGPTSPSMSVLTVQSTSMGNGSVKDAASVSKP 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2188836 2191485 - CmaCh10G004800.1 Cma10g00480 301796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00480 419 MobiDBLite consensus disorder prediction 375 398 - -
Cma10g00480 419 MobiDBLite consensus disorder prediction 289 327 - -
Cma10g00480 419 MobiDBLite consensus disorder prediction 167 208 - -
Cma10g00480 419 MobiDBLite consensus disorder prediction 167 217 - -
Cma10g00480 419 PANTHER TRANSCRIPTION FACTOR BHLH69 47 375 - -
Cma10g00480 419 MobiDBLite consensus disorder prediction 300 327 - -
Cma10g00480 419 Gene3D - 208 270 IPR036638 GO:0046983
Cma10g00480 419 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 213 262 IPR011598 GO:0046983
Cma10g00480 419 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 211 273 IPR036638 GO:0046983
Cma10g00480 419 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 47 375 - -
Cma10g00480 419 SMART finulus 219 268 IPR011598 GO:0046983
Cma10g00480 419 Pfam Helix-loop-helix DNA-binding domain 218 263 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g01236 Cma10g00480 CCT
Cma10g00480 Cma12g01153 CCT
Cma10g00480 Cma11g00473 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00285 Cma-Chr9:1167219 Cma10g00480 Cma-Chr10:2188836 1.20E-21 dispersed
Cma10g00480 Cma-Chr10:2188836 Cma12g01153 Cma-Chr12:9092596 5.83E-101 dispersed
Cma11g01701 Cma-Chr11:11238101 Cma10g00480 Cma-Chr10:2188836 5.97E-23 dispersed
Cma16g00324 Cma-Chr16:1521773 Cma10g00480 Cma-Chr10:2188836 1.75E-20 dispersed
Cma19g00554 Cma-Chr19:6318015 Cma10g00480 Cma-Chr10:2188836 6.55E-21 dispersed
Cma10g00480 Cma-Chr10:2188836 Cma11g00473 Cma-Chr11:2294679 0 wgd
Cma10g00480 Cma-Chr10:2188836 Cma05g01236 Cma-Chr5:9494722 4.98E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35720 PF00010 HLH 1.60E-09 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00480 - - csv:101211609 703.36