Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00482 ATGGCAAAGAAAGAGATGGAAGTGGTTAAAGGGTTGGATCTTGAGAAGTACATGGGAAGATGGTATGAGATAGCTTCAATTCCATCGAGAAATCAACCAAAAAATGGTGTGAACACAAGGGCTACTTATACGCTCAAAGAAGATGGAACTGTGAAAGTGGTGAATGAAACTTGGAGCGATGGCAAGAAAAGTTGCATGGAAGGTGTGGCTTATAAGGCTGAGCCTTCAAGCGAGGAGGCCAAGTTCAAGGTCAAGTTCTATTTGCCTCCCTTCCTTCCAATCATTCCAGTTGTTGGGAATTACTGGGTTTTGTTTATTGATGGTGATTATCAGTATGTCCTGGTTGGGGAGCCTTCAAGGAAGAATCTTTGGATATTGTGCAGAAATACTCATCTTAACGAGGAGATATACAATGAGCTGCTTGAAAAAGCCAAGGAAAAGGGTTATGATGTAAACAAACTGCACAAGACACCACAGAGCGATCCTCCACCAGAAGGTGAAGGTCCCAAAGATACAAAAGGCATATGGTGGATAAAGTCCATTCTTCTGGGAAAGTAA 558 42.29 MAKKEMEVVKGLDLEKYMGRWYEIASIPSRNQPKNGVNTRATYTLKEDGTVKVVNETWSDGKKSCMEGVAYKAEPSSEEAKFKVKFYLPPFLPIIPVVGNYWVLFIDGDYQYVLVGEPSRKNLWILCRNTHLNEEIYNELLEKAKEKGYDVNKLHKTPQSDPPPEGEGPKDTKGIWWIKSILLGK 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2210076 2210720 - CmaCh10G004820.1 Cma10g00482 301798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00482 185 Gene3D - 1 163 IPR012674 -
Cma10g00482 185 MobiDBLite consensus disorder prediction 153 173 - -
Cma10g00482 185 PIRSF Lipocalin_ApoD 1 169 IPR022271 -
Cma10g00482 185 SUPERFAMILY Lipocalins 5 166 IPR012674 -
Cma10g00482 185 CDD lipocalin_Blc-like 9 157 - -
Cma10g00482 185 Pfam Lipocalin-like domain 12 159 IPR000566 -
Cma10g00482 185 PANTHER APOLIPOPROTEIN D 1 182 - -
Cma10g00482 185 PRINTS Bacterial lipocalin signature 12 26 IPR002446 -
Cma10g00482 185 PRINTS Bacterial lipocalin signature 49 58 IPR002446 -
Cma10g00482 185 PRINTS Bacterial lipocalin signature 121 132 IPR002446 -
Cma10g00482 185 PRINTS Bacterial lipocalin signature 148 158 IPR002446 -
Cma10g00482 185 ProSitePatterns Lipocalin signature. 11 24 IPR022272 -
Cma10g00482 185 PANTHER TEMPERATURE-INDUCED LIPOCALIN-1-LIKE 1 182 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00482 Cma11g00478 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01254 Cma-Chr5:9619614 Cma10g00482 Cma-Chr10:2210076 1.22E-98 dispersed
Cma10g00482 Cma-Chr10:2210076 Cma11g00478 Cma-Chr11:2318504 2.65E-120 wgd
Cma10g00482 Cma-Chr10:2210076 Cma12g01175 Cma-Chr12:9248727 5.87E-39 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00482 K03098 - csv:101213453 347.051