Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00483 ATGACCGTGGAGAGTCATTCAGTTGATTCAGCCGGCGATGGTGGCGCCGCCGATCATTTTCCTGTTGGGATGCGGGTTCTGGCTGTCGATGATGATCCCATTTGTCTTAAAGTGCTCGAGCATCTCCTCCGGAAATGCCAATATCATGTCACCACGACGAAGAGGTCCATTGAGGCTTTGAAGATGTTGAGAGAAAATAGAAACAAAGTGGACTTGGTTATCAGTGATGTGAACATGCCTGATATGGATGGGTTCAAGCTTCTTGAGTTGGTGGGGCTTGAGATGGACCTACCTGTGATCATGTTATCAGCACATAGTGATACTGAGCTTGTGATGAAGGGGATTGCGCACGGTGCGTGCGACTATCTGTTGAAACCAGTTCGAATCGAGGAGTTGAAGAACATTTGGCAGCACGTGATTCGGAGAAAGAAGCTCGAACCGAAGGCAAAAAACAAGTTCCCTAATCAAGATAACGTTGGAAATGGAGGAAGTGAAGGTGAACGAGGTTTCTCATCAACCAGTAATGCAGACAATGAAAAACTCAACAGGAAACGAAAGGAACAAGACGATGATGAGGATGAAGAAGGAAAAGAGAACGAGGTTGATATCGACGACCCATCGAACCTGAAGAGGCCTAGGGTAGTATGGTCAGTTGAGTTGCACCGGAAGTTCGTTTCAGCAGTTAATCAATTGGGTCTTGAAAAAGCCGTGCCGAAAAAAATTCTGGATCTGATGAATGTTGAAGGACTTACCAGAGAAAATAAATATAGGCTTTACCTGAAAAGAATCAGCAATGTGGCATCTCAACAAGCTAACATGGCTGCTACATTTGGGAGTAAAGAAGGCACTTACATGCGCATAGGTTCATATGATGGCTATGGAGATATGCATGGCTTTGCAGGATCAGGGCGGCTTCCAAGCTCTTCTTTATCTTATTATTCACCTGTTGGAATGAGCCTGATCCAACAAAGCTCCCATAATTTGAACTGTGCTATCAGTAATCTTGGGCATCCAGCTATTATGTTGCCTCCTCACCAAACTACTAATCTATTGCAAGGGATTCCGACGTCACTCGAGCTCGGCCATTTGCAGCACAGCAAGTCCACCACTTCCATTGGAGAAGCTTTTGACATAGACTTCGGCTGTTCGAGTTTTTTGGATCCTGATCCTTCTAATGGTAACTGGCAGGGAGCAGCACAATTGTTGAGATTCTCAGCAACTTTGAACCCCATTGAGGAGTATCCCATTGATCACATGCATGCAATGAACTCGAGCATTTCCTCCGCCCCCTCAAAGAACAGGAACATCTCGGTTGTTGGATCAGTTTCAGCTCCCTTGCTGGATTCAAGAGACCTGCAGTGCCAGGCAGGGGTAGGGGTGGTTGACAGTATGCCAAAGCAGAGTTGGGAAGAGCACGAACACGATTACGCCCGATCCCCCTTAAGCCAGAGTTTCAATCAGAATAGTCTAGTTTGTGAGAGAAAGGTCGGTTCGTCTTTGATAGTCCCATCAAATGATGCTCAACTATCCTTCCCTCAGCACAGTGTGGTTGAAAAATTGGGTCCTAACACAAAGACGAATGCAGATAGAAACTTACACGATGGATCGATTCAAGGAAGTTTCGAGTCCTTGGATGATATAATGAACGCTATGATCAAACAGGGATTGACGACTTACCCATTCAGTGACCTTGGCACTGGACGTTCCAAAACTGGAGTACTATCGGGTCAGGGCGGATTAACGCCCTTATCCATTTTCCATTACCGAACAGAACAAGTTCCATCAAGAAGCTGTGGGGAAAATGCTAACAAAAAAAGTCTCAACAATTTGAAAAGCTCTACCACAGCTCAAAATTATTCTAAGAAGGCTGCTTCAACAGTTCTGTAA 1887 45.31 MTVESHSVDSAGDGGAADHFPVGMRVLAVDDDPICLKVLEHLLRKCQYHVTTTKRSIEALKMLRENRNKVDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVMKGIAHGACDYLLKPVRIEELKNIWQHVIRRKKLEPKAKNKFPNQDNVGNGGSEGERGFSSTSNADNEKLNRKRKEQDDDEDEEGKENEVDIDDPSNLKRPRVVWSVELHRKFVSAVNQLGLEKAVPKKILDLMNVEGLTRENKYRLYLKRISNVASQQANMAATFGSKEGTYMRIGSYDGYGDMHGFAGSGRLPSSSLSYYSPVGMSLIQQSSHNLNCAISNLGHPAIMLPPHQTTNLLQGIPTSLELGHLQHSKSTTSIGEAFDIDFGCSSFLDPDPSNGNWQGAAQLLRFSATLNPIEEYPIDHMHAMNSSISSAPSKNRNISVVGSVSAPLLDSRDLQCQAGVGVVDSMPKQSWEEHEHDYARSPLSQSFNQNSLVCERKVGSSLIVPSNDAQLSFPQHSVVEKLGPNTKTNADRNLHDGSIQGSFESLDDIMNAMIKQGLTTYPFSDLGTGRSKTGVLSGQGGLTPLSIFHYRTEQVPSRSCGENANKKSLNNLKSSTTAQNYSKKAASTVL 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2210896 2214892 - CmaCh10G004830.1 Cma10g00483 301799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00483 628 SUPERFAMILY Homeodomain-like 209 262 IPR009057 -
Cma10g00483 628 MobiDBLite consensus disorder prediction 592 628 - -
Cma10g00483 628 Gene3D - 208 264 - -
Cma10g00483 628 PANTHER TWO-COMPONENT RESPONSE REGULATOR 381 559 - -
Cma10g00483 628 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 375 - -
Cma10g00483 628 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Cma10g00483 628 SUPERFAMILY CheY-like 23 148 IPR011006 -
Cma10g00483 628 MobiDBLite consensus disorder prediction 154 177 - -
Cma10g00483 628 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 212 254 IPR006447 GO:0003677
Cma10g00483 628 PIRSF RR_ARR_type-B 1 626 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cma10g00483 628 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Cma10g00483 628 Gene3D - 24 201 - -
Cma10g00483 628 CDD REC_typeB_ARR-like 26 140 - -
Cma10g00483 628 SMART REC_2 24 136 IPR001789 GO:0000160
Cma10g00483 628 MobiDBLite consensus disorder prediction 147 206 - -
Cma10g00483 628 PANTHER TWO-COMPONENT RESPONSE REGULATOR 381 559 IPR045279 GO:0009736
Cma10g00483 628 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 375 IPR045279 GO:0009736
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00420 Cma-Chr9:1816748 Cma10g00483 Cma-Chr10:2210896 7.16E-126 dispersed
Cma10g00483 Cma-Chr10:2210896 Cma11g00478 Cma-Chr11:2318504 0 dispersed
Cma01g01650 Cma-Chr1:11291445 Cma10g00483 Cma-Chr10:2210896 3.47E-122 wgd
Cma10g00483 Cma-Chr10:2210896 Cma12g01172 Cma-Chr12:9241331 1.37E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35721 PF00072 Response_reg 4.50E-25 CL0304 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00483 K14491 - cmos:111429974 1021.54