Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00485 ATGAACAAAATGCTACATGCTAATTGCCACATCCGCCAACCTGTTACTGAAACAGCCCGTAGGGTCTGGGAAGCCACAGAAGCTATGGGCGATATTTCGTTGGAAGATGTCAAGAATGAGAACGTTGATCTAGAACGGATTCCTGTGGAGGAAGTTTTTGAGAAACTAAAATGCACTAAAGAAGGATTGAGCACAGCAGAAGGAGAAAAGAGACTCCAAATTTTTGGTCCTAACAAGCTTGAAGAGAAAAAAGAGAGCAAGGTTTTGAAGTTCTTGGGGTTTATGTGGAATCCTCTATCATGGGTTATGGAATCTGCGGCAATCATGGCCATTGCTCTGGCTAATGGAGGGGGGAAACCACCGGATTGGCAAGATTTTGTTGGGATTATTGTGTTGTTGATCATTAATTCTACCATTAGTTTCATTGAAGAGAACAATGCTGGAAATGCAGCTGCTGCTCTCATGGCTGGTCTGGCACCCAAAACCAAGGTTCTAAGAGATGGGAAGTGGAAAGAAGAGGAGGCAGCAATTCTGGTTCCAGGGGATGTGATTAGCGTTAAATTAGGAGATATTATCCCGGCCGATGCACGTCTCTTAGAAGGCGATCCTCTCAAGATTGACCAGTCTGCTCTTACGGGTGAATCTTTGCCTGTCACCAAGAATCCTGGTGATGAAGTGTTCTCTGGCTCCACCTGCAAGCAAGGAGAGATTGAGGCCGTTGTTATTGCCACTGGAGTGCATACCTTTTTTGGAAAGGCAGCTCATCTTGTGGACAGCACCAACCAAGTTGGTCATTTCCAAAAGGTGTTGACGGCCATTGGAAACTTCTGTATATGCTCGATCGCGGTCGGGATGGTCATTGAGATTCTAGTAATGTTTGCTATCCAGCACAGAGCATACAGAGAGGGCATTGACAACTTGTTGGTGCTTCTCATTGGAGGCATTCCCATAGCAATGCCAACGGTTCTTTCAGTAACCATGGCCATCGGATCGCATCGCCTTTCGCAGCAAGGTGCCATCACCAAGAGGATGACAGCCATTGAAGAGATGGCTGGGATGGATGTCCTCTGCAGTGACAAGACAGGAACTCTCACCCTGAACAAGCTCACAGTAGACAAGTCCCTGATTGAGGTGTTTGTACCAAACATGGACAAGGATGCTGTCATGCTGTTTGCTGCAAGAGCGTCGAGAGTCAAAAATCAAGACGCCATCGATGCCTGCATTGTTGAAATGTTGGATGACCCCAAAGAGGCAAGAGCAGGAATAACTGAGGTGCATTTCTTGCCGTTTAACCCGGTCGATAAACGTACTGCCATTACCTACATCGACACAGATGGTAACTGGCACAGAAGCAGCAAGGGCGCTCCTGAACAGATCATTGACCTTTGTGACCTTAAAGGTGAAGTAAGGCAGAAAGCTCATACCATTATCGATAACTACGCTAATCGCGGTCTTCGTTCGTTGGCCGTTGGCCGACAGACTGTTAAAGACAAGGACAAGGAAAGTGCTGGAGAACCATGGGAATTTGTTGGTCTCTTGCCTCTATTTGATCCTCCAAGGCATGACAGTGCAGAAACCATTCGCCGAGCTCTAGAACTTGGTGTTAATGTTAAGATGATCACTGGTGACCAACTTGCAATAGGCAAAGAAACCGGTCGGAGGCTCGGCATGGGCACGAACATGTATCCGTCCTTGTCTTTGCTCGGCCAAAGCATGGATGAGTCAATTGCTTCTATTCCTGTTGATGAACTCATTGAGAAGGCTGATGGGTTTGCAGGAGTCTTCCCTGAACACAAGTATGAGATTGTTAAGAGACTTCAGGAGAGGAACCATATTTGTGGCATGACAGGAGATGGTGTCAATGATGCTCCTGCTCTCAAGAGGGCCGACATCGGTATTGCTGTGGCTGATGCAACCGACGCAGCACGAAGCGCATCAGACATTGTCTTGACCGAGCCAGGACTAAGTGTGATTGTGAGTGCTGTGTTAACCAGTAGAGCCATCTTTCAAAGAATGAAAAACTACACTATCTATGCAGTTTCCATTACAATACGTATCGTGTTGGGATTCATGCTTGTTGCTCTCATCTGGAAGTTTGATTTCTCGCCTTTTATGGTCCTTATCATTGCCATCCTAAACGATGGAACCATCATGACCATTTCAAAGGATAGAGTGAAGCCATCACCTGTGCCTGACTCATGGAGACTCAAAGAAATTTTTGCTACTGGTGTTGTCCTTGGAACATACATGGCCTTCGCGACCGTGTTTTTCTTCTGGCTCGCCAACGAAACCGTCTTCTTCCCGAAAACATTTGGTGTAAAGCCACTTAAAGATCTTGCTGAGATGAACTCTGCTCTCTATCTTCAAGTGAGCATTATCAGTCAAGGTCTCATCTTCGTCACCAGGTCAAGAAGTTGGTCCTTTGTTGAATGCCCTGGTTTCTTGCTAGTTATTGCCTTCATTGCTGCTCAGTTGGTTGCCACTCTAATTGCTGTATATTCCGAATGGGACTTTGCAAGGATCAAAGGCATTGGGTGGGGATGGGCAGGAGCCATCTGGTTATTCAGTATTGTCACTTACTTCCCACTTGATGTCCTCAAATTTGCAATCCGTTATGGCCTCAGCGGCAAGGCCTGGGACAACATGCTTGAGAATAAGACTGCGTTTACGACGAAGAAGGATTACGGAAAAGGCGAAAGAGAGGCACAATGGGCAATAGCCCAACGTACAAGGCATGGCCTGCAGCCACCAGAAACCATATTTCATGAAAAGAGCAGCTACGAGGAACTTTCAGCGATTGCAGAGCAAGCCAAGAAAAGAGCTGAAATTGCCAGGCTGAGGGAACTCCACACTTTGAAGGGCCATGTGGAGTCAGTGGTGAAGTTGAAGGGGTTGGACATTGACACTATCCAACAGCACTACACTCTTTGA 2931 46.67 MNKMLHANCHIRQPVTETARRVWEATEAMGDISLEDVKNENVDLERIPVEEVFEKLKCTKEGLSTAEGEKRLQIFGPNKLEEKKESKVLKFLGFMWNPLSWVMESAAIMAIALANGGGKPPDWQDFVGIIVLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWKEEEAAILVPGDVISVKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKNPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMVIEILVMFAIQHRAYREGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSLIEVFVPNMDKDAVMLFAARASRVKNQDAIDACIVEMLDDPKEARAGITEVHFLPFNPVDKRTAITYIDTDGNWHRSSKGAPEQIIDLCDLKGEVRQKAHTIIDNYANRGLRSLAVGRQTVKDKDKESAGEPWEFVGLLPLFDPPRHDSAETIRRALELGVNVKMITGDQLAIGKETGRRLGMGTNMYPSLSLLGQSMDESIASIPVDELIEKADGFAGVFPEHKYEIVKRLQERNHICGMTGDGVNDAPALKRADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLVALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPVPDSWRLKEIFATGVVLGTYMAFATVFFFWLANETVFFPKTFGVKPLKDLAEMNSALYLQVSIISQGLIFVTRSRSWSFVECPGFLLVIAFIAAQLVATLIAVYSEWDFARIKGIGWGWAGAIWLFSIVTYFPLDVLKFAIRYGLSGKAWDNMLENKTAFTTKKDYGKGEREAQWAIAQRTRHGLQPPETIFHEKSSYEELSAIAEQAKKRAEIARLRELHTLKGHVESVVKLKGLDIDTIQQHYTL 976
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2222497 2228175 + CmaCh10G004850.1 Cma10g00485 301801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00485 976 Gene3D - 122 842 - -
Cma10g00485 976 SUPERFAMILY Calcium ATPase, transduction domain A 160 257 IPR008250 -
Cma10g00485 976 PANTHER CALCIUM-TRANSPORTING ATPASE 29 956 - -
Cma10g00485 976 Pfam haloacid dehalogenase-like hydrolase 353 630 - -
Cma10g00485 976 Gene3D - 925 976 - -
Cma10g00485 976 SMART Cation_ATPase_N_a_2 43 115 IPR004014 -
Cma10g00485 976 Gene3D - 160 244 - -
Cma10g00485 976 SFLD Haloacid Dehalogenase 339 668 - -
Cma10g00485 976 Coils Coil 927 947 - -
Cma10g00485 976 PANTHER PLASMA MEMBRANE ATPASE 29 956 - -
Cma10g00485 976 Pfam Cation transporter/ATPase, N-terminus 47 109 IPR004014 -
Cma10g00485 976 SFLD p-type atpase 339 668 IPR044492 -
Cma10g00485 976 Pfam E1-E2 ATPase 159 336 - -
Cma10g00485 976 PRINTS H+-transporting ATPase (proton pump) signature 588 604 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma10g00485 976 PRINTS H+-transporting ATPase (proton pump) signature 787 808 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma10g00485 976 PRINTS H+-transporting ATPase (proton pump) signature 647 672 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma10g00485 976 PRINTS H+-transporting ATPase (proton pump) signature 473 491 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma10g00485 976 PRINTS H+-transporting ATPase (proton pump) signature 616 632 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma10g00485 976 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 591 703 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma10g00485 976 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 129 393 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma10g00485 976 SUPERFAMILY HAD-like 353 663 IPR036412 -
Cma10g00485 976 CDD P-type_ATPase_H 62 868 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cma10g00485 976 ProSitePatterns E1-E2 ATPases phosphorylation site. 359 365 IPR018303 -
Cma10g00485 976 Gene3D - 354 653 IPR023214 -
Cma10g00485 976 Gene3D - 369 516 IPR023299 GO:0000166
Cma10g00485 976 SUPERFAMILY Calcium ATPase, transmembrane domain M 42 872 IPR023298 -
Cma10g00485 976 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 62 833 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cma10g00485 976 PRINTS P-type cation-transporting ATPase superfamily signature 639 651 - -
Cma10g00485 976 PRINTS P-type cation-transporting ATPase superfamily signature 207 221 - -
Cma10g00485 976 PRINTS P-type cation-transporting ATPase superfamily signature 533 543 - -
Cma10g00485 976 PRINTS P-type cation-transporting ATPase superfamily signature 616 635 - -
Cma10g00485 976 PRINTS P-type cation-transporting ATPase superfamily signature 357 371 - -
Cma10g00485 976 PRINTS P-type cation-transporting ATPase superfamily signature 511 522 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00485 Cma-Chr10:2222497 Cma11g00484 Cma-Chr11:2340888 0 dispersed
Cma01g00171 Cma-Chr1:759278 Cma10g00485 Cma-Chr10:2222497 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00485 K01535 - csv:101214655 1746.1