Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00493 ATGGCATTTGATCAGAACGCGATTCCCACTGGCTTGCGGCCTTTAAATGTAGCTAGAACTTTAGTTGAAGATCCCCATTTAACGCCGGTCGCTACTTCTGGGCGTAATCCCCATTGGGTTGCCCCCAAGCTTCCCTGCGACATTGCTAACACAGACTCTGTACCCGTTCCTTGCAAGGGAAATGTCTCCGATATGGGATTTATCGAGGGAGGATATGGAAATGTGGTTACTGGTGTTACGGCTTGGTGCCCTCGAATGCCTCCTCCTCTCACGCACACTGCAATGGTTCCTGCCGCAGGGTTTGGTTACAGCTCGAACCTGAATGCCTGGGGCAATCGTGGTGGTGCCAATGCTATTGAGTTTGCTAGCAGTTGCATGACAGTTGGGATTAATCATAGTACAAATTTGAGTCATCGAGATGGGGGAGGTGGCATGGAATTTTCGAGCAATAATATCGTAATGGGGTCTGGGGATAGTACCAATTTATGCAATAAGGTTGCTGCCAACGGTGATCATATCGGTAGTGATAGCACCTCTGGATTTATCTCCCCCTTAGGGAATTCAGCTGGTGGGAATGCGGTTGATCAAGTGAGAGAGGAGGGGGGAAACAGTTCCGTTTCGAAAAAGAAAGTTAAGTTTATGTGCAGTTTCGGTGGTAAGATTTTTCCAAGACCGAGTGATGGTATGTTGAGATATATTGGAGGTCAAACAAGGATTATAAGTGTTAGAAGAGATGTGACTTTCAATGAGTTTGTGCAAAAGATGGTTGATACCTGTGGGCAGGCTGTGGTTATAAAGTATCAGCTCCCCGATGAGGATCTTGACGCTTTAGTATCTGTTTCATGCCCTGATGATCTTGATAATATGATGGACGAGTATGAGAAGCTGGTTGAGAGGTCTTCAGATGGATCTGCTAAATTGAGGATGTTTTTGTTCTCTGCTTCAGAACTTGACTCTGCAGGTATGGTGCAATTTGGCGATGTACACGATAGTGGGCAGAGATATGTTGAAACAGTGAATACGATATTTGATGGCGTTGGTGGCCGTATTACAAGGAGAGAGAGCTTTACAAGTGCTACCTCAACTCAGAATTCTGACTTAAGTGCGACCGAGGCAATGGATATCTCATATAACGATCTAGGGGTTGTGGGTGAGCCTCCATCCACAACATTGTCCGTACCTGAAGGAAATTTAGGTACTTCAGGTGCTATTGGCCCTAGATTAGTGAATGTGGATACTGTCTCTGCAGTTTTTGTTGATGCCTCGGCTGTTCCATCAAGTATTCCTGTGATTAACTCTGTTCCTCCTGAAAGTTCTTCCCAGCCAGAGGCGGAGTTAGGAAGGTCAGTGCCTGCTACTCTGATGCAACAGCAACCAGATATTGGCTTTCCTCCACCTGTGCCTCAATTGCAGCCTACTGTTGATCCTCGCCAAGCAGCATGTGTGGACTTTATACAATTTTGTCCACAACTAGGCTTTTCAAATTCTCATCATCTAGGGACATCTGGGTCTATGTTTATGCAACCGCCAAATACTCTTGGAATAGCCCCTCATCAGTTTGTCCCTGCAGTTCACATGAGGATGACTCCCTCTTCTAACCTCAGTATTATGCCTAATACCTATCAATCGTTGGTGCAATATCCACAATCCCAACCGGAATATTTTTCCAATGCAAGCACATCCGGTCCAAGGTTTGTCCAGCTATCTGCAGAACATGGCTACAGCTCACGCCAGATTCCAGCTCCTCCAGTATCAGTGGAGGTTGGATTTGGTTTACATCAGGTACCGTGGTCTGATCAGACAGTTATATCTGATGAATTGGTATCCCAACATCAGGTAACTTTTGCTGAGAAAATCAAGAGGTTGGATGACTGTTACCTCTGCCAGAAAGCAGTGCCACATGCTCATTCCAATTCAACGTTGCAGGATAAAAGAGAAAATTTGACAAACCCTGTATCTGATTCAAAATTTTCGTATTACAGTCATCACCCTGAAGATCATTTAGCAGTCCATCCAATGAAAAATATTGCAGAAACTGGAGCTTTGGGGCAACAAACTATTGAACATGGTGTTGGAATGCAAACCAGGATATTTAATCCCATGGATCCAGAAGTTGAAAAATCTTCAGTGGAGGCTATTGGCTTCCCACATCATATTGGAGGTCAACATGAGAACGACAACACACTAAAAGATCGACCTAATATTGATCATACTAAGACCTCAGCTCTACAGGGTGCTCTTGGGACGCAAGGGGATTTTCCGTCACCCCATGTTGCTGTTGTAGAACAGATTCCTCAGTCCGGCGAAGTTGATACTCTCCAGCACCAGTATACAGCTGTAGAGAATCAGTTCCATCCAAATTTAGTCGTGGATAAGCACAATATTTGCTTTGGAGGTGCTCCTATCCATGCTTCAGAGTACAGCAGTCATGAAAATCTGAAAGTGTATTCTAATAGTCCTCATGGCATTATTCCAAATCAAAATGCTACCCACACTGGAATTTGGTACGACCATCTCAGACCAATTGTTGGAAATTTGGAAAGTTTAAGTATATGCCCAACTGATATTTGTCCTAATCTGGATCACTGCAAATCACCCACTGAAAGAACTAGGAAGGAGGACAATTTTGGTAGCTGTTCACAACCAGTCTCTGAGATAGAAGTTCTACTTGATAACAACTCTGTAAAGCCAATAGTGGTTCTCGACACAAATCATGTGAAACCAACTACTTTTGCTTGCTCTTCATCAGAGGTTCCCTATTTGATGAGTGAACGACCTATTGAGTCCAGTGAAGTGGCACAACCTCCTGTTGGGGGCTATCCCGGAACATTAACACAGTCAGAAAATGGGATACAACAGTTAGAATCCAATAAAGTATGTCTTAGCAGAAATCCCCAGTTATTTGACACGAAGACTGAACATACGAATAATCAAGTCCCAGTTTCTGCTGATTGGAAGGAGGACACTTATCTATTTGAATCTAGGATGGTATCTGGTGATGTTGAATCTGAATCTTTGCCTACCAGGACTGGAAATGTGCAGGACACTGCAAATTCACTCTTCAGCAATCAGGATCCTTGGAACTTACAGCACGATGATCATCTTTTGCCTCCTAGACCAAATAAAATTCAACCAAGGAATGAGGCTGTTACCACCAGGGAACCCTTGACAGAGAGTCCTTTCAGGAATATTGGTGAACTAAAAATGGAAGCATTTCTGGATGATGGAGTCTGTCACCCATTGGTTAAGTCAAACAAGGGCTCTTCAGAGGAACAAATTAAGAAAGATCTTCAAGCTGTTGCTGAGGGTGTAGCTGCTTCTGTTCTTCAGTCAGCTCAATCCTCCAACTCCGACTTGCATGAAAAAAGTGATTCAGTTTGTGAGATTAGCACAGAAGGAGATGTTCAAAAAAATGATGATGTCAGGACAAGACATTCAGAAAAATCAAATCTCGGTTTTCCAATGTCAGAAGGCTTTGGCCACTTGCAGGTAATAAAGAATAGTGACCTTGAAGAACTAAGAGAATTGGGGTCTGGCACCTTTGGCACTGTTTATCATGGAAAATGGAGAGGGACTGATGTTGCTATCAAACGAATCAATGATAGGTGTTTTGCTGGGAAGCCTTCTGAACAAGATCGCATGAGGGAAGATTTTTGGAATGAAGCAAATAAGCTTGCTGATTTGCACCACCCAAATGTGGTTGCTTTTTATGGTATTGTGCTTGATGGTCCTGGCGGCTCTGTGGCAACAGTAACAGAATATATGGTTAATGGCTCGCTCAGAAATGCTTTGTTGAAGAATGAAAAGAGTCTTGACAAGCGTAAGCGCCTCTTGATTGCTATGGATGTGGCTTTTGGTATGGAATACCTGCACAGAAAGAATATAGTGCACTTTGATTTAAAAAGTGATAATCTGCTCGTTAACCTTCGAGATCCTCATCGCCCAATATGCAAGGTTGGTGACTTGGGCCTATCCAAGGTGAAACGTCAGACATTGATATCAGGTGGTGTGCGGGGAACACTTCCGTGGATGGCACCCGAGCTTTTGAATGGGAGCAGCAATATGGTGTCAGAGAAGGTTGACGTGTTTTCCTTTGGTATCGTCTTGTGGGAGCTTCTCACTGGAGAAGAACCTTATGCAAATTTGCATTATGGGGTTATCATAGGTGGCATAGTAAGCAACACATTGCGCCCGGAAGTACCAGAGTCTTGTGATCCAGAATGGAGGTCACTGATGGAGAGATGCTGGTCATCAGAACCATCAGAGAGGCCAAGCTTCACTGAAATTGCACATGAATTGCGCTCCATGGCTGCAAAGGTTCCCCCGAAAGTACCCAATCAGCAGCAGTAG 4350 44.07 MAFDQNAIPTGLRPLNVARTLVEDPHLTPVATSGRNPHWVAPKLPCDIANTDSVPVPCKGNVSDMGFIEGGYGNVVTGVTAWCPRMPPPLTHTAMVPAAGFGYSSNLNAWGNRGGANAIEFASSCMTVGINHSTNLSHRDGGGGMEFSSNNIVMGSGDSTNLCNKVAANGDHIGSDSTSGFISPLGNSAGGNAVDQVREEGGNSSVSKKKVKFMCSFGGKIFPRPSDGMLRYIGGQTRIISVRRDVTFNEFVQKMVDTCGQAVVIKYQLPDEDLDALVSVSCPDDLDNMMDEYEKLVERSSDGSAKLRMFLFSASELDSAGMVQFGDVHDSGQRYVETVNTIFDGVGGRITRRESFTSATSTQNSDLSATEAMDISYNDLGVVGEPPSTTLSVPEGNLGTSGAIGPRLVNVDTVSAVFVDASAVPSSIPVINSVPPESSSQPEAELGRSVPATLMQQQPDIGFPPPVPQLQPTVDPRQAACVDFIQFCPQLGFSNSHHLGTSGSMFMQPPNTLGIAPHQFVPAVHMRMTPSSNLSIMPNTYQSLVQYPQSQPEYFSNASTSGPRFVQLSAEHGYSSRQIPAPPVSVEVGFGLHQVPWSDQTVISDELVSQHQVTFAEKIKRLDDCYLCQKAVPHAHSNSTLQDKRENLTNPVSDSKFSYYSHHPEDHLAVHPMKNIAETGALGQQTIEHGVGMQTRIFNPMDPEVEKSSVEAIGFPHHIGGQHENDNTLKDRPNIDHTKTSALQGALGTQGDFPSPHVAVVEQIPQSGEVDTLQHQYTAVENQFHPNLVVDKHNICFGGAPIHASEYSSHENLKVYSNSPHGIIPNQNATHTGIWYDHLRPIVGNLESLSICPTDICPNLDHCKSPTERTRKEDNFGSCSQPVSEIEVLLDNNSVKPIVVLDTNHVKPTTFACSSSEVPYLMSERPIESSEVAQPPVGGYPGTLTQSENGIQQLESNKVCLSRNPQLFDTKTEHTNNQVPVSADWKEDTYLFESRMVSGDVESESLPTRTGNVQDTANSLFSNQDPWNLQHDDHLLPPRPNKIQPRNEAVTTREPLTESPFRNIGELKMEAFLDDGVCHPLVKSNKGSSEEQIKKDLQAVAEGVAASVLQSAQSSNSDLHEKSDSVCEISTEGDVQKNDDVRTRHSEKSNLGFPMSEGFGHLQVIKNSDLEELRELGSGTFGTVYHGKWRGTDVAIKRINDRCFAGKPSEQDRMREDFWNEANKLADLHHPNVVAFYGIVLDGPGGSVATVTEYMVNGSLRNALLKNEKSLDKRKRLLIAMDVAFGMEYLHRKNIVHFDLKSDNLLVNLRDPHRPICKVGDLGLSKVKRQTLISGGVRGTLPWMAPELLNGSSNMVSEKVDVFSFGIVLWELLTGEEPYANLHYGVIIGGIVSNTLRPEVPESCDPEWRSLMERCWSSEPSERPSFTEIAHELRSMAAKVPPKVPNQQQ 1449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2260523 2266285 - CmaCh10G004930.1 Cma10g00493 301809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00493 1449 Gene3D Phosphorylase Kinase; domain 1 1163 1257 - -
Cma10g00493 1449 SMART PB1_new 225 314 IPR000270 GO:0005515
Cma10g00493 1449 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 167 1440 - -
Cma10g00493 1449 SUPERFAMILY Protein kinase-like (PK-like) 1161 1431 IPR011009 -
Cma10g00493 1449 Gene3D - 232 314 - -
Cma10g00493 1449 CDD STKc_MAP3K-like 1176 1433 - -
Cma10g00493 1449 Gene3D Transferase(Phosphotransferase) domain 1 1258 1449 - -
Cma10g00493 1449 SUPERFAMILY CAD & PB1 domains 226 317 - -
Cma10g00493 1449 Pfam PB1 domain 230 313 IPR000270 GO:0005515
Cma10g00493 1449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1295 1307 IPR008271 GO:0004672|GO:0006468
Cma10g00493 1449 PRINTS Tyrosine kinase catalytic domain signature 1252 1265 IPR001245 GO:0004672|GO:0006468
Cma10g00493 1449 PRINTS Tyrosine kinase catalytic domain signature 1289 1307 IPR001245 GO:0004672|GO:0006468
Cma10g00493 1449 PRINTS Tyrosine kinase catalytic domain signature 1360 1382 IPR001245 GO:0004672|GO:0006468
Cma10g00493 1449 PRINTS Tyrosine kinase catalytic domain signature 1404 1426 IPR001245 GO:0004672|GO:0006468
Cma10g00493 1449 SMART serkin_6 1170 1436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00493 1449 CDD PB1_UP2 214 312 - -
Cma10g00493 1449 ProSiteProfiles Protein kinase domain profile. 1170 1434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00493 1449 ProSitePatterns Protein kinases ATP-binding region signature. 1176 1207 IPR017441 GO:0005524
Cma10g00493 1449 Pfam Protein tyrosine and serine/threonine kinase 1171 1433 IPR001245 GO:0004672|GO:0006468
Cma10g00493 1449 PANTHER SERINE-THREONINE PROTEIN KINASE 167 1440 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00493 Cma-Chr10:2260523 Cma20g00282 Cma-Chr20:1367487 1.10E-34 dispersed
Cma10g00493 Cma-Chr10:2260523 Cma13g00852 Cma-Chr13:7026725 1.50E-31 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68839 PF07714 PK_Tyr_Ser-Thr 3.10E-61 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00493 - - csv:101203826 2342.38