Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00532 ATGATTGATGACAAGTCTGGTTATGATGAACCAGCTTCTGCTGCGCTCTATGAGCAGAAGAAGGCTGAAGAAAAGGGCGGGGAAGGGAAGGGGCAGCAGAAAAACCCTGGCGCCGCATCACAGCCGCTGGATGTGTCGGGCGGAGTTTTGGGTTCTCTGCAGCTTGAGGGTATGGAGAAAAGGTGTGGTTGTTGGGCTGTTTTGACTCGTACTGTTTCAGGTGTTTGCAAATCCTCTGCTTCTAAAGACTCTCCGAACAACATTCCTCGAACCAGCCTAGTTTATGATTCTGCTACCGAAACACGGTATTTGAATGCTAGCAACAGGGAACTCTCTACCTCGAATGAAGCTGAGCTAGCCTCTGATAATGCCAATCCATCACCATCAGAGAACAAATCAACAAGCAAACTACTTCAGTTCTCTTTTCATGAGCTGAAGGCAGCAACAGGAAACTTTAGACCTGATAGCATTCTTGGGGAAGGTGGATTTGGATTTGTCTTTAAAGGATGGATTGAAGAGAATGGGACAGCCCCTGCGAAACCCGGAGCAGGAATTACGGTGGCTGTTAAGAGCTTGAAACTAGATGGTCTTCAAGGCCATAGAGAATGGGTGGCTGAGGTTGTCTTTCTTGGACAACTTCACCATCCAAATCTTGTTAAGCTTATAGGTTACTGTAACGAAGATGATCAACATTTGCTTGTTTATGAGTTCATGAGCCGTGGAAGTCTGGAAAACCATCTTTTCAGAAGGACTATTCCTCTTCCATGGTCCAATAGGATTAAGATTGCCCTCAAAGCGGCAAAAGGATTGGCCTTTCTTCATAACGCCCCAGTCCCTGTTATCTATAGAGATTTTAAGACATCCAATATCTTGCTCGATTCGGAATACAATGCAAAGCTTTCAGATTTTGGCTTTGCGAAAGCAGGGCCTCAAGGAGACAAAACACATGTTTCTACCAGGGTAATTGGGACGTATGGCTATGCTGCTCCTGAATATGTAATGACAGGACATCTGACGTCGAAGAACGATGTTTATAGCTTTGGTGTTGTGCTTCTTGAGATTGTAACAGGGAGAAGATCCATGGACAAGAAACGTCCGAGTGGGGAGCAAAACCTTGTGTCATGGGCTTGGCCATATTTAGGTGATAAAAGAAAGCTATATCATATAGTTGATCCCCGCCTGGAATTCAAGTATTCCATTAAAGGGGTGCAGAAGGTCTCCCAGCTTGCTTGCAGTTGCCTGAGCAGGGACCCGAAACTACGTCCGACCATGGACGAAGTCGTGAAGACCCTGACTCCGCTGCAACATCTCAACGACCTTGCCATCCTAACATCTCACTGCCGCTTATCTTCTTCACAAGGGGGGTGCAAGAAGAAACCTGAAGGCCTAACCTACTCCCAAAACTTCAGAGCTTCTCCATTGAACATCGGAAAGCAGCATGTTAGGTGA 1449 46.24 MIDDKSGYDEPASAALYEQKKAEEKGGEGKGQQKNPGAASQPLDVSGGVLGSLQLEGMEKRCGCWAVLTRTVSGVCKSSASKDSPNNIPRTSLVYDSATETRYLNASNRELSTSNEAELASDNANPSPSENKSTSKLLQFSFHELKAATGNFRPDSILGEGGFGFVFKGWIEENGTAPAKPGAGITVAVKSLKLDGLQGHREWVAEVVFLGQLHHPNLVKLIGYCNEDDQHLLVYEFMSRGSLENHLFRRTIPLPWSNRIKIALKAAKGLAFLHNAPVPVIYRDFKTSNILLDSEYNAKLSDFGFAKAGPQGDKTHVSTRVIGTYGYAAPEYVMTGHLTSKNDVYSFGVVLLEIVTGRRSMDKKRPSGEQNLVSWAWPYLGDKRKLYHIVDPRLEFKYSIKGVQKVSQLACSCLSRDPKLRPTMDEVVKTLTPLQHLNDLAILTSHCRLSSSQGGCKKKPEGLTYSQNFRASPLNIGKQHVR 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2436574 2441137 + CmaCh10G005320.1 Cma10g00532 301848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00532 482 PANTHER OS01G0588500 PROTEIN 107 447 - -
Cma10g00532 482 MobiDBLite consensus disorder prediction 16 30 - -
Cma10g00532 482 PANTHER OS01G0588500 PROTEIN-RELATED 107 447 - -
Cma10g00532 482 MobiDBLite consensus disorder prediction 108 133 - -
Cma10g00532 482 Gene3D Transferase(Phosphotransferase) domain 1 238 446 - -
Cma10g00532 482 CDD STKc_IRAK 158 434 - -
Cma10g00532 482 MobiDBLite consensus disorder prediction 1 45 - -
Cma10g00532 482 ProSiteProfiles Protein kinase domain profile. 152 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00532 482 ProSitePatterns Protein kinases ATP-binding region signature. 158 190 IPR017441 GO:0005524
Cma10g00532 482 ProSitePatterns Serine/Threonine protein kinases active-site signature. 280 292 IPR008271 GO:0004672|GO:0006468
Cma10g00532 482 SUPERFAMILY Protein kinase-like (PK-like) 134 436 IPR011009 -
Cma10g00532 482 Pfam Protein tyrosine and serine/threonine kinase 156 431 IPR001245 GO:0004672|GO:0006468
Cma10g00532 482 Gene3D Phosphorylase Kinase; domain 1 127 237 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00532 Cma12g01192 CCT
Cma10g00532 Cma11g00529 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00532 Cma-Chr10:2436574 Cma18g01174 Cma-Chr18:9397046 2.95E-178 dispersed
Cma10g00532 Cma-Chr10:2436574 Cma11g00529 Cma-Chr11:2542611 0 wgd
Cma10g00532 Cma-Chr10:2436574 Cma12g01192 Cma-Chr12:9352555 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68841 PF07714 PK_Tyr_Ser-Thr 3.70E-46 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00532 - - bhj:120071895 800.431