Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00541 ATGGCCAGCTGCCTCGATATTGCACCCGAACAGCTCTGCTACATCCCTTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCTTGTTTGATATTGTGACAGTCCGATGTGGGCACTGCACAAATCTGTGGTCCGTGAATATGGCTGCTGCATTTCAGGCTCTTTCCTGGCAAGATGTTCAGGTTCCAAATTACAACTTATACAGTTGTAACGGACCTGACTTTCAAGGTGATTTTGGATCGTCTTCTTCATCATCGAAATGTAATAACAACAAGATGGAAATTCGAGCAAACACAACAATGGCAGCAGAGGAGAGGGTTGTGAATCGACCTCCCGAGAAGAAGCAGAGAGTACCATCTGCATATAATCAGTTCATAAAAGAGGAAATCCAAAGGATTAAGGCTAATAATCCTGAGATTAGCCATAGGGAAGCTTTCAGTACTGCAGCCAAGAACTGGGCACATTATCCTCGTATTCCCTTTTGGTCGGATGTTGGAAACCAGCAATCAAATGAAGCTAGATGA 537 43.76 MASCLDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALSWQDVQVPNYNLYSCNGPDFQGDFGSSSSSSKCNNNKMEIRANTTMAAEERVVNRPPEKKQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHYPRIPFWSDVGNQQSNEAR 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2483897 2486274 + CmaCh10G005410.1 Cma10g00541 301857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00541 178 PANTHER PROTEIN YABBY 6-RELATED 1 171 IPR006780 GO:0007275
Cma10g00541 178 Pfam YABBY protein 9 165 IPR006780 GO:0007275
Cma10g00541 178 SUPERFAMILY HMG-box 110 160 IPR036910 -
Cma10g00541 178 PANTHER AXIAL REGULATOR YABBY 5 1 171 - -
Cma10g00541 178 Gene3D High mobility group box domain 104 162 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00541 Cma-Chr10:2483897 Cma15g01149 Cma-Chr15:7308199 1.12E-50 dispersed
Cma10g00541 Cma-Chr10:2483897 Cma11g00536 Cma-Chr11:2583470 8.80E-110 wgd
Cma10g00541 Cma-Chr10:2483897 Cma12g01202 Cma-Chr12:9427635 1.48E-79 wgd
Cma10g00541 Cma-Chr10:2483897 Cma05g01287 Cma-Chr5:9820965 1.82E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35723 PF04690 YABBY 1.30E-67 CL0114 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00541 K25796 - cmos:111461521 343.199