Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00541 ATGGCCAGCTGCCTCGATATTGCACCCGAACAGCTCTGCTACATCCCTTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCTTGTTTGATATTGTGACAGTCCGATGTGGGCACTGCACAAATCTGTGGTCCGTGAATATGGCTGCTGCATTTCAGGCTCTTTCCTGGCAAGATGTTCAGGTTCCAAATTACAACTTATACAGTTGTAACGGACCTGACTTTCAAGGTGATTTTGGATCGTCTTCTTCATCATCGAAATGTAATAACAACAAGATGGAAATTCGAGCAAACACAACAATGGCAGCAGAGGAGAGGGTTGTGAATCGACCTCCCGAGAAGAAGCAGAGAGTACCATCTGCATATAATCAGTTCATAAAAGAGGAAATCCAAAGGATTAAGGCTAATAATCCTGAGATTAGCCATAGGGAAGCTTTCAGTACTGCAGCCAAGAACTGGGCACATTATCCTCGTATTCCCTTTTGGTCGGATGTTGGAAACCAGCAATCAAATGAAGCTAGATGA 537 43.76 MASCLDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALSWQDVQVPNYNLYSCNGPDFQGDFGSSSSSSKCNNNKMEIRANTTMAAEERVVNRPPEKKQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHYPRIPFWSDVGNQQSNEAR 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2483897 2486274 + CmaCh10G005410.1 Cma10g00541 301857

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00541 178 PANTHER PROTEIN YABBY 6-RELATED 1 171 IPR006780 GO:0007275
Cma10g00541 178 Pfam YABBY protein 9 165 IPR006780 GO:0007275
Cma10g00541 178 SUPERFAMILY HMG-box 110 160 IPR036910 -
Cma10g00541 178 PANTHER AXIAL REGULATOR YABBY 5 1 171 - -
Cma10g00541 178 Gene3D High mobility group box domain 104 162 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00541 K25796 YAB; plant-specific transcription factor YABBY family protein - cmos:111461521 343.199
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00541 Cma-Chr10:2483897 Cma15g01149 Cma-Chr15:7308199 1.12E-50 dispersed
Cma10g00541 Cma-Chr10:2483897 Cma11g00536 Cma-Chr11:2583470 8.80E-110 wgd
Cma10g00541 Cma-Chr10:2483897 Cma12g01202 Cma-Chr12:9427635 1.48E-79 wgd
Cma10g00541 Cma-Chr10:2483897 Cma05g01287 Cma-Chr5:9820965 1.82E-80 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma04g01709 CCT 17 174 C2C2-YABBY Transcription Factor Family AT1G69180 55.7 9.2e-44 174.1
Cma02g01557 . 71 231 C2C2-YABBY Transcription Factor Family AT2G45190 59.5 1.9e-43 172.9
Cma15g01149 CCT 81 236 C2C2-YABBY Transcription Factor Family AT2G45190 57.4 1.2e-42 170.2
Cma02g01297 . 1 176 C2C2-YABBY Transcription Factor Family AT1G08465 62.5 7.2e-52 201.1
Cma11g00536 . 40 214 C2C2-YABBY Transcription Factor Family AT1G08465 54.7 1.0e-42 170.6
Cma02g01557 . 27 219 C2C2-YABBY Transcription Factor Family AT1G08465 52.6 1.4e-42 170.2
Cma15g01149 CCT 37 224 C2C2-YABBY Transcription Factor Family AT1G08465 51.5 1.8e-42 169.9
Cma10g00541 . 5 176 C2C2-YABBY Transcription Factor Family AT1G08465 50.8 1.7e-37 153.3
Cma06g00763 CCT 19 187 C2C2-YABBY Transcription Factor Family AT1G08465 52.7 2.2e-37 152.9
Cma02g01557 . 38 230 C2C2-YABBY Transcription Factor Family AT4G00180 57.0 4.0e-51 198.7
Cma15g01149 CCT 48 235 C2C2-YABBY Transcription Factor Family AT4G00180 56.0 2.0e-50 196.4
Cma04g01741 CST 1 160 C2C2-YABBY Transcription Factor Family AT1G23420 52.0 2.1e-36 150.2
Cma11g00536 . 42 210 C2C2-YABBY Transcription Factor Family AT2G26580 72.2 3.6e-63 238.4
Cma05g01287 . 8 170 C2C2-YABBY Transcription Factor Family AT2G26580 72.4 4.4e-61 231.5
Cma12g01202 . 8 168 C2C2-YABBY Transcription Factor Family AT2G26580 69.1 3.3e-56 215.3
Cma10g00541 . 7 165 C2C2-YABBY Transcription Factor Family AT2G26580 69.2 7.3e-56 214.2
Cma02g01297 . 1 176 C2C2-YABBY Transcription Factor Family AT2G26580 55.1 2.3e-46 182.6
Cma15g01149 CCT 37 196 C2C2-YABBY Transcription Factor Family AT2G26580 56.4 2.9e-44 175.6
Cma02g01557 . 29 191 C2C2-YABBY Transcription Factor Family AT2G26580 54.2 5.4e-43 171.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001272 2 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35723 PF04690 YABBY 1.30E-67 CL0114 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00541 Cma_Chr10 FPKM 0.0 0.0 0.0 0.0 36.136616 35.246738 31.032976 0.0 0.0 0.0