Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00544 ATGAAGCGGGTATCTCGAAAAATTGGGAAGTATGAGATGGGGCGGACTGTCGGCGAAGGAACGTTTGCCAAGGTTAAGTTTGCATGTAACACGGAGACGGGGGAGGGTGTGGCCATGAAAGTTATGGCCAAAAGTAGCATTCTCAAACACAAAATGGTAGAACAGATTAAGAGGGAGATATCAATAATGAAAATTGTCAGGCATCCACATATTGTCAGACTGCATGAGGTATTGGCTAGCCAGACAAAGATATATATAATTCTTGAGTTTGTCTCTGGAGGTGAACTATATGATAAAATAGTTCTTCATAAGAAGATTCCAGAATTTGAGTCTAGACGATACTTTCAACAACTGATAGATGCAGTTGCTCATTGTCACAGCAAGGGTGTATACCACAGGGACCTTAAGCCTGAAAACCTTCTTCTTGATGCTGATGGAAATCTGAAGGTTTCTGACTTCGGACTGAGTGCGGTGTCTCAACAAGGTGTTGAGCTGCTTCACACCACATGTGGAACTCCTAATTATGTTGCGCCTGAGGTGCTTCGTGGTCAGGGTTATGATGGTGCAGCTGCAGATATATGGTCATGTGGAGTCATCCTCTATGTACTAATGGCCGGATATCTTCCTTTTTCAGAGTCAGGCCTCCCCACCCTAAATATGAAGATAAATGCAGCGGAGTATTCCTGCCCCTATTGGTTTTCACCTGGTGTGAAGTCCTTGATACAGAAGATACTTGATCCGAATCCTAAAACTCGGATTCGAATTGAAGAAATCAGAAAAGACCCATGGTTCAGAAGAAACTACATGCCTGCTAAACTAGGAAAAGTTGAGGAAGTAAACTTAGATGATGTACGGGCTGTTTTTGATGGCATTGAGAATGAATATGTAGTTGATCAGTCAGAAAAAAGTGACGATGGTCCGTTGATAATGAATGCATTTGAGATGATAACATTATCTCAAGGATTAAATCTGTCACCATTATTTGACCGGCGACAGGACTATATAAAGCGGCAAACACGTTTTGTTTCTCGTAAACCTGCTAACTTCATAATGTCTACCATTGAAGTAGTGGCAGAAGCAATGGGTTTAAATGTCCACACACGTAATTTCAAGACAAGGTTGGAAAGAAGGACTGGACACAGGGCTTCACAGTTTGCAGCTGTGCTGGAGATTTATGAAGTGGCCCCGTCACTTTTTATGGTGGACGTTCGCAAGGCTGCAGGAGACACTCTAGAATATCACAAGTTCTACAAGAATTTCTGTGCTAAGCTAGAAAATATAATCTGGAAACCATCAGAGAGTGTAGGGAACTGA 1314 42.24 MKRVSRKIGKYEMGRTVGEGTFAKVKFACNTETGEGVAMKVMAKSSILKHKMVEQIKREISIMKIVRHPHIVRLHEVLASQTKIYIILEFVSGGELYDKIVLHKKIPEFESRRYFQQLIDAVAHCHSKGVYHRDLKPENLLLDADGNLKVSDFGLSAVSQQGVELLHTTCGTPNYVAPEVLRGQGYDGAAADIWSCGVILYVLMAGYLPFSESGLPTLNMKINAAEYSCPYWFSPGVKSLIQKILDPNPKTRIRIEEIRKDPWFRRNYMPAKLGKVEEVNLDDVRAVFDGIENEYVVDQSEKSDDGPLIMNAFEMITLSQGLNLSPLFDRRQDYIKRQTRFVSRKPANFIMSTIEVVAEAMGLNVHTRNFKTRLERRTGHRASQFAAVLEIYEVAPSLFMVDVRKAAGDTLEYHKFYKNFCAKLENIIWKPSESVGN 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2500684 2506083 + CmaCh10G005440.1 Cma10g00544 301860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00544 437 ProSiteProfiles Protein kinase domain profile. 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00544 437 ProSiteProfiles NAF domain profile. 305 329 IPR018451 GO:0007165
Cma10g00544 437 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 4 433 - -
Cma10g00544 437 PANTHER - 4 433 - -
Cma10g00544 437 Gene3D Transferase(Phosphotransferase) domain 1 2 307 - -
Cma10g00544 437 Gene3D Kinase associated domain 1, KA1 308 430 - -
Cma10g00544 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Cma10g00544 437 SMART serkin_6 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00544 437 SUPERFAMILY Protein kinase-like (PK-like) 8 312 IPR011009 -
Cma10g00544 437 Pfam NAF domain 307 366 IPR004041 GO:0007165
Cma10g00544 437 CDD CIPK_C 311 426 - -
Cma10g00544 437 Pfam Protein kinase domain 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00544 437 ProSitePatterns Protein kinases ATP-binding region signature. 17 49 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00561 Cma-Chr5:2752550 Cma10g00544 Cma-Chr10:2500684 3.96E-88 dispersed
Cma10g00544 Cma-Chr10:2500684 Cma12g00176 Cma-Chr12:803794 0 dispersed
Cma10g00544 Cma-Chr10:2500684 Cma11g00541 Cma-Chr11:2606886 1.07E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68843 PF00069 Pkinase 4.20E-72 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00544 - - csv:101203676 816.609