Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00549 ATGGGGCAAACCAAAGCCATTTGGTGGGTTTTTCTGGGAATTCTAGCAATGGTTTTGCCTGTAAAAACTCAGCTGGCTGTTGGGTTTTACTCCAAATCTTGTCCTAGAGCTGAGTCCATTGTCAGGTCCACTGTTCAGTCATATTACAAGGCTGATCCCACCATCGCCGCTGGGTTGCTCAGGCTTCACTTCCATGACTGTTTCGTTCAGGGGTGCGATGGTTCAGTGTTGATCATGGACGAACGAGCTGAAATAAATGCTGGGCCAAACATGGGGTTGAGAGGCTTTGAAGTAGTCGATGATGCAAAAGCTCAGCTTGAAAATCTGTGCCCTGGGGTTGTTTCTTGCGCGGATATACTTGCTTTGGCTACTCGTGATGCTGTAGACTTGAGTGATGGCCCAAGCTGGTCTGTGCCCACTGGAAGGAGGGATGGGAGAGTGTCTATGAGTTTCCAGGCGGAAGATCTTCCTTCTCCATTTGAGCCCATTGATGTCCACATACAGAAGTTCGCTGAGAAAGGGCTTACCGAAGAAGATCTTGTTACTTTAGTTGGTGCGCACACGATCGGACGAACAGACTGCCAACTATTCAGTTACCGGCTACAGAACTTCACAAGCACAGGGAATGCAGACCCAACCATAAACCCATCCTTCTTGACCCAACTCAGAACGCTGTGCCCCTTGGATGGAGATCCGTTCAGAGGCGTGGCAATGGACAAGGACAGCCAGTTGAGATTCGACAACAGCTTCTTCAAGAACTTGGTCAATGGAAATGGTGTTTTGGAGTCGGACCAGAGGCTGTGGCAACACGCTTCAACCAAGGACGTTGTGCAGAGGTATGCCGGCAACTTAAGGGGCTTGCTCGGCCTCAGATTTAACTATGAGTTCAAGAAAGCCATGGTTAAGCTGAGTAGCCTCGACGTCAAGACCGGCACACAAGGGGAGATTAGAAAACTCTGTTCCCAGTTCAATAACCAGTGA 981 49.34 MGQTKAIWWVFLGILAMVLPVKTQLAVGFYSKSCPRAESIVRSTVQSYYKADPTIAAGLLRLHFHDCFVQGCDGSVLIMDERAEINAGPNMGLRGFEVVDDAKAQLENLCPGVVSCADILALATRDAVDLSDGPSWSVPTGRRDGRVSMSFQAEDLPSPFEPIDVHIQKFAEKGLTEEDLVTLVGAHTIGRTDCQLFSYRLQNFTSTGNADPTINPSFLTQLRTLCPLDGDPFRGVAMDKDSQLRFDNSFFKNLVNGNGVLESDQRLWQHASTKDVVQRYAGNLRGLLGLRFNYEFKKAMVKLSSLDVKTGTQGEIRKLCSQFNNQ 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2522741 2525511 + CmaCh10G005490.1 Cma10g00549 301865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00549 326 CDD secretory_peroxidase 24 323 IPR033905 GO:0004601|GO:0042744
Cma10g00549 326 Gene3D - 28 324 - -
Cma10g00549 326 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma10g00549 326 PRINTS Haem peroxidase superfamily signature 114 131 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma10g00549 326 PRINTS Haem peroxidase superfamily signature 132 144 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma10g00549 326 PRINTS Haem peroxidase superfamily signature 179 194 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma10g00549 326 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma10g00549 326 Pfam Peroxidase 41 282 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma10g00549 326 ProSitePatterns Peroxidases proximal heme-ligand signature. 179 189 IPR019793 -
Cma10g00549 326 ProSiteProfiles Plant heme peroxidase family profile. 24 324 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma10g00549 326 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma10g00549 326 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma10g00549 326 PRINTS Plant peroxidase signature 94 107 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma10g00549 326 PRINTS Plant peroxidase signature 113 123 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma10g00549 326 PRINTS Plant peroxidase signature 132 147 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma10g00549 326 PRINTS Plant peroxidase signature 178 190 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma10g00549 326 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma10g00549 326 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma10g00549 326 PRINTS Plant peroxidase signature 298 311 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma10g00549 326 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601
Cma10g00549 326 PANTHER PEROXIDASE 10 323 - -
Cma10g00549 326 PANTHER PEROXIDASE 25-RELATED 10 323 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma10g00549 326 Gene3D Peroxidase, domain 2 157 303 - -
Cma10g00549 326 SUPERFAMILY Heme-dependent peroxidases 24 324 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00549 Cma-Chr10:2522741 Cma19g00264 Cma-Chr19:1878536 2.43E-128 dispersed
Cma10g00549 Cma-Chr10:2522741 Cma20g00633 Cma-Chr20:2948709 2.24E-84 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00549 K00430 - csv:101214998 575.474