Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma10g00578 | ATGGATGCCGTCAGAAACAGAGGGCCTTTCAGGGTTTCTGTTTGTGGTCAAGAAGAGCTTGAGCAACTCTCCAGAGATGGCAGTCAGTTTAGCCTCAGCACTGGGATATTGCCCTCTCTTGGCGCTAGAAGCAATCGCAGAGTCAAACTCCGGCGTTTTGTCATTTCGCCTTATGATCATCGATACAGGATTTGGGAGACTTTTCTCGTTGTTTTGGTGGTATATACAGCTTGGGTCTCGCCATTCGAGTTTGGATTCCTTAAGAAACCCCAATCTCCACTTTCCATTACAGATAATGTGGTTAATGGATTTTTTGCTGTGGATATTGTTCTCACATTCTTTGTGGCTTACCTCGATAAATCCACTTATTTACTTGTCGACGAACCGAAGAAGATTGCTCTTAAGTATGCAAGTTCATGGCTAGTCTTTGATGTCATATCCACAATTCCTTCTGAACTTGCACATAAGATCTCCCCTTCACCTCTCCGTTCTTATGGATTATTCAACATGCTTCGTCTATGGCGTCTTCGAAGAGTCAGTGCTCTTTTTTCCAGACTGGAAAAAGATAGGAACTATAATTACTTTTGGGTTCGATGTGCAAAACTCGTTTGTGTTACTCTGTTTGCGGTTCACTGTGCTGCATGCTTCTATTATCTCCTTGCTGCTCGTTATCATGACCCAAAAAGGACATGGATTGGAGCATCTATGGAGAACTTTCTTGAGCAAAGTTTGTGGATTAGATATGTCACTTCGATTTACTGGTCTATCACTACCCTAACCACTGTCGGCTATGGCGACTTGCATCCTGTGAATACAAGGGAAATGGTTTTTGACATCTTCTACATGCTTTTCAATCTTGGTTTGACAGCATACTTGATTGGAAATATGACCAACTTAGTCGTCCATGGGACCAGTAGAACTAGAAAATTCAGGGATACCATACAAGCTGCATCTAGTTTTGCCCACAGGAATCAACTTCCTGTTCGTTTGCAAGACCAAATGCTTGCACATTTGTGTCTAAAGTTCAGAACTGACTCTGAGGGATTGCAGCAGCAAGAAACACTCGATTCCTTGCCGAAAGCCATCCGATCAAGCATTTCACATTATCTTTTCTATTCTCTAGTGGACAAGGTCTACTTGTTTCGTGGTGTTTCAAATGACCTAATTTTTCAACTGGTTTCGGAAATGAAGGCAGAGTATTTTCCTCCAAAAGAAGACGTGATTTTACAAAATGAAGCCCCAACAGACTTCTATATTCTTGTCACGGGTGCTGTGGATTTGCTTGTTCTTAAGAATGGAGTTGAACAGGCAAGTCTGTTCATTGAAGCTCTTGGATTTTCTGAATGTTGGGTTGTTGGAGAGGCTAAAACTGGTGAACTTTGCGGAGAAATTGGGGTGTTATGTTACAGGCCACAACTGTTTACTGTCCGTACAAAACGATTGAGTCAGTTGCTGCGTCTGAATCGAACGGCTTTCCTGAATATTGTTCAATCTAATGTTGGTGATGGGACTATAATCATGAACAATCTTCTTCAGCACTTGAAAGACGTCAAAGACAAGGACCCCATCATGGAAGGAGTTTTGTTGGAGACAGAGAACATGCTAGCTAGAGGCAGATTGGACCTACCACTTAGTCTTTGCTTTGCAACACTTAGAGGTGACGACTTGCTTTTACACCAACTTTTGAAAAGAGGTCTCGATCCAAATGAATCAGATAACAACGGGAGGACTTCACTTCATATAGCAGCATCAAAAGGAAACGAGAACTGTGTGCTTCTATTACTGGACTTTGGAGCGGATCCCAACAGTAGAGATTCAGACGGGATTGTGCCATTATGGGAGGCGATACTAGGTGGCCATGAGGCAGTAGTGCAGCTACTTATAGACAATGGTGCTAATCTCCGATCAGGAGATGTGGGTCACTTCGCGTGTACTGCCGCAGAGCAAAACAACCTCCAGTTGCTCAAAGAGATTCTCCGATATGGCGGAGACGTTTTGAGTTCCAGGAACAATGGAACGACTGCTTTACATGTTGCTGTTTGTGAAGACAACATTGAGATTGTCAAGTTCCTTCTTAAACAAGGAGCTGATATTGACAAACCAGATGTCCATGGATGGACTCCAAGAGATCTAGCAGACCAACAGGGACATGAAGAAATTAAAAACCTCTTCCAGACAATAAAAGAATTGAAAACTCAATCTGTCGTTGCCATTCCCGAGAAGCAGAAAGCGATTCGCTTCCTTGGAAGATTTACAAGCGAGCCTATGATTCTTCCTTCACCTCAGGAAGGAAATGATGGTTCATGGGCGGGTCAATCTCGTCCACGACGTAGGACTAACAACTTCCATAACTCATTGTTTGGAATCATGTCAGCAGCACATACAGGCGAGAAAGACATGAGTTTTGCTGATCACCAAACCAGAGGAGAGAAATCTGGAACCAACCCAGCAAGGGTGATAATCAGCTGTCCAGAGATTGGCGAAGTAGCTGGGAAGGTAGTGCTGCTTCCAGAAAGCTTCAACGAGCTGCTTGAGATTGGTTCCATGAAATATGGGATTATGGCTTCAAAGGTATTGAACAAAGATGGAGCTGCCATTGAAGATATAGAGGTCATTAGGGACGGCGATCAGCTTATTTTTGTCAGCAATGGAGGAACCATATAA | 2664 | 43.21 | MDAVRNRGPFRVSVCGQEELEQLSRDGSQFSLSTGILPSLGARSNRRVKLRRFVISPYDHRYRIWETFLVVLVVYTAWVSPFEFGFLKKPQSPLSITDNVVNGFFAVDIVLTFFVAYLDKSTYLLVDEPKKIALKYASSWLVFDVISTIPSELAHKISPSPLRSYGLFNMLRLWRLRRVSALFSRLEKDRNYNYFWVRCAKLVCVTLFAVHCAACFYYLLAARYHDPKRTWIGASMENFLEQSLWIRYVTSIYWSITTLTTVGYGDLHPVNTREMVFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAHRNQLPVRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLVDKVYLFRGVSNDLIFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQASLFIEALGFSECWVVGEAKTGELCGEIGVLCYRPQLFTVRTKRLSQLLRLNRTAFLNIVQSNVGDGTIIMNNLLQHLKDVKDKDPIMEGVLLETENMLARGRLDLPLSLCFATLRGDDLLLHQLLKRGLDPNESDNNGRTSLHIAASKGNENCVLLLLDFGADPNSRDSDGIVPLWEAILGGHEAVVQLLIDNGANLRSGDVGHFACTAAEQNNLQLLKEILRYGGDVLSSRNNGTTALHVAVCEDNIEIVKFLLKQGADIDKPDVHGWTPRDLADQQGHEEIKNLFQTIKELKTQSVVAIPEKQKAIRFLGRFTSEPMILPSPQEGNDGSWAGQSRPRRRTNNFHNSLFGIMSAAHTGEKDMSFADHQTRGEKSGTNPARVIISCPEIGEVAGKVVLLPESFNELLEIGSMKYGIMASKVLNKDGAAIEDIEVIRDGDQLIFVSNGGTI | 887 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2647001 | 2653577 | + | CmaCh10G005780.1 | Cma10g00578 | 301894 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma10g00578 | 887 | Gene3D | - | 63 | 301 | - | - | |
Cma10g00578 | 887 | PRINTS | Ankyrin repeat signature | 687 | 701 | IPR002110 | GO:0005515 | |
Cma10g00578 | 887 | PRINTS | Ankyrin repeat signature | 575 | 590 | IPR002110 | GO:0005515 | |
Cma10g00578 | 887 | Pfam | KHA, dimerisation domain of potassium ion channel | 818 | 880 | IPR021789 | - | |
Cma10g00578 | 887 | ProSiteProfiles | Ankyrin repeat region circular profile. | 671 | 702 | - | - | |
Cma10g00578 | 887 | SUPERFAMILY | Voltage-gated potassium channels | 57 | 301 | - | - | |
Cma10g00578 | 887 | PRINTS | EAG/ELK/ERG potassium channel family signature | 98 | 108 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Cma10g00578 | 887 | PRINTS | EAG/ELK/ERG potassium channel family signature | 292 | 301 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Cma10g00578 | 887 | PRINTS | EAG/ELK/ERG potassium channel family signature | 274 | 285 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Cma10g00578 | 887 | PRINTS | EAG/ELK/ERG potassium channel family signature | 75 | 82 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Cma10g00578 | 887 | PRINTS | EAG/ELK/ERG potassium channel family signature | 109 | 118 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Cma10g00578 | 887 | PRINTS | EAG/ELK/ERG potassium channel family signature | 248 | 265 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Cma10g00578 | 887 | SMART | ANK_2a | 607 | 636 | IPR002110 | GO:0005515 | |
Cma10g00578 | 887 | SMART | ANK_2a | 574 | 603 | IPR002110 | GO:0005515 | |
Cma10g00578 | 887 | SMART | ANK_2a | 638 | 667 | IPR002110 | GO:0005515 | |
Cma10g00578 | 887 | SMART | ANK_2a | 671 | 700 | IPR002110 | GO:0005515 | |
Cma10g00578 | 887 | SMART | ANK_2a | 541 | 570 | IPR002110 | GO:0005515 | |
Cma10g00578 | 887 | SUPERFAMILY | cAMP-binding domain-like | 305 | 514 | IPR018490 | - | |
Cma10g00578 | 887 | CDD | CAP_ED | 380 | 499 | IPR000595 | - | |
Cma10g00578 | 887 | ProSiteProfiles | Ankyrin repeat profile. | 671 | 703 | IPR002110 | GO:0005515 | |
Cma10g00578 | 887 | ProSiteProfiles | KHA domain profile. | 818 | 887 | IPR021789 | - | |
Cma10g00578 | 887 | ProSiteProfiles | Ankyrin repeat profile. | 574 | 606 | IPR002110 | GO:0005515 | |
Cma10g00578 | 887 | Gene3D | Jelly Rolls | 345 | 520 | IPR014710 | - | |
Cma10g00578 | 887 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 380 | 496 | IPR000595 | - | |
Cma10g00578 | 887 | PANTHER | K+ TRANSPORTER 1-RELATED | 7 | 883 | - | - | |
Cma10g00578 | 887 | MobiDBLite | consensus disorder prediction | 756 | 777 | - | - | |
Cma10g00578 | 887 | ProSiteProfiles | Ankyrin repeat region circular profile. | 574 | 605 | - | - | |
Cma10g00578 | 887 | ProSiteProfiles | Ankyrin repeat region circular profile. | 607 | 638 | - | - | |
Cma10g00578 | 887 | SUPERFAMILY | Ankyrin repeat | 545 | 724 | IPR036770 | - | |
Cma10g00578 | 887 | PANTHER | POTASSIUM CHANNEL AKT1 | 7 | 883 | IPR045319 | GO:0005249|GO:0006813 | |
Cma10g00578 | 887 | SMART | cnmp_10 | 380 | 511 | IPR000595 | - | |
Cma10g00578 | 887 | Pfam | Ion transport protein | 63 | 307 | IPR005821 | GO:0005216|GO:0006811|GO:0016020|GO:0055085 | |
Cma10g00578 | 887 | ProSiteProfiles | Ankyrin repeat profile. | 607 | 639 | IPR002110 | GO:0005515 | |
Cma10g00578 | 887 | Pfam | Cyclic nucleotide-binding domain | 400 | 499 | IPR000595 | - | |
Cma10g00578 | 887 | Pfam | Ankyrin repeats (3 copies) | 546 | 635 | IPR002110 | GO:0005515 | |
Cma10g00578 | 887 | Pfam | Ankyrin repeats (3 copies) | 645 | 701 | IPR002110 | GO:0005515 | |
Cma10g00578 | 887 | Gene3D | - | 542 | 726 | IPR036770 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g01541 | Cma-Chr1:10763372 | Cma10g00578 | Cma-Chr10:2647001 | 2.17E-09 | dispersed | |
Cma09g00474 | Cma-Chr9:2084472 | Cma10g00578 | Cma-Chr10:2647001 | 0 | dispersed | |
Cma10g00578 | Cma-Chr10:2647001 | Cma13g00555 | Cma-Chr13:5665470 | 0 | dispersed | |
Cma14g00564 | Cma-Chr14:2822452 | Cma10g00578 | Cma-Chr10:2647001 | 1.23E-14 | dispersed | |
Cma14g00236 | Cma-Chr14:1036657 | Cma10g00578 | Cma-Chr10:2647001 | 2.34E-12 | transposed | |
Cma10g00578 | Cma-Chr10:2647001 | Cma11g00553 | Cma-Chr11:2667971 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma10g00578 | K21867 | - | csv:101220784 | 1615.9 |