Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00578 ATGGATGCCGTCAGAAACAGAGGGCCTTTCAGGGTTTCTGTTTGTGGTCAAGAAGAGCTTGAGCAACTCTCCAGAGATGGCAGTCAGTTTAGCCTCAGCACTGGGATATTGCCCTCTCTTGGCGCTAGAAGCAATCGCAGAGTCAAACTCCGGCGTTTTGTCATTTCGCCTTATGATCATCGATACAGGATTTGGGAGACTTTTCTCGTTGTTTTGGTGGTATATACAGCTTGGGTCTCGCCATTCGAGTTTGGATTCCTTAAGAAACCCCAATCTCCACTTTCCATTACAGATAATGTGGTTAATGGATTTTTTGCTGTGGATATTGTTCTCACATTCTTTGTGGCTTACCTCGATAAATCCACTTATTTACTTGTCGACGAACCGAAGAAGATTGCTCTTAAGTATGCAAGTTCATGGCTAGTCTTTGATGTCATATCCACAATTCCTTCTGAACTTGCACATAAGATCTCCCCTTCACCTCTCCGTTCTTATGGATTATTCAACATGCTTCGTCTATGGCGTCTTCGAAGAGTCAGTGCTCTTTTTTCCAGACTGGAAAAAGATAGGAACTATAATTACTTTTGGGTTCGATGTGCAAAACTCGTTTGTGTTACTCTGTTTGCGGTTCACTGTGCTGCATGCTTCTATTATCTCCTTGCTGCTCGTTATCATGACCCAAAAAGGACATGGATTGGAGCATCTATGGAGAACTTTCTTGAGCAAAGTTTGTGGATTAGATATGTCACTTCGATTTACTGGTCTATCACTACCCTAACCACTGTCGGCTATGGCGACTTGCATCCTGTGAATACAAGGGAAATGGTTTTTGACATCTTCTACATGCTTTTCAATCTTGGTTTGACAGCATACTTGATTGGAAATATGACCAACTTAGTCGTCCATGGGACCAGTAGAACTAGAAAATTCAGGGATACCATACAAGCTGCATCTAGTTTTGCCCACAGGAATCAACTTCCTGTTCGTTTGCAAGACCAAATGCTTGCACATTTGTGTCTAAAGTTCAGAACTGACTCTGAGGGATTGCAGCAGCAAGAAACACTCGATTCCTTGCCGAAAGCCATCCGATCAAGCATTTCACATTATCTTTTCTATTCTCTAGTGGACAAGGTCTACTTGTTTCGTGGTGTTTCAAATGACCTAATTTTTCAACTGGTTTCGGAAATGAAGGCAGAGTATTTTCCTCCAAAAGAAGACGTGATTTTACAAAATGAAGCCCCAACAGACTTCTATATTCTTGTCACGGGTGCTGTGGATTTGCTTGTTCTTAAGAATGGAGTTGAACAGGCAAGTCTGTTCATTGAAGCTCTTGGATTTTCTGAATGTTGGGTTGTTGGAGAGGCTAAAACTGGTGAACTTTGCGGAGAAATTGGGGTGTTATGTTACAGGCCACAACTGTTTACTGTCCGTACAAAACGATTGAGTCAGTTGCTGCGTCTGAATCGAACGGCTTTCCTGAATATTGTTCAATCTAATGTTGGTGATGGGACTATAATCATGAACAATCTTCTTCAGCACTTGAAAGACGTCAAAGACAAGGACCCCATCATGGAAGGAGTTTTGTTGGAGACAGAGAACATGCTAGCTAGAGGCAGATTGGACCTACCACTTAGTCTTTGCTTTGCAACACTTAGAGGTGACGACTTGCTTTTACACCAACTTTTGAAAAGAGGTCTCGATCCAAATGAATCAGATAACAACGGGAGGACTTCACTTCATATAGCAGCATCAAAAGGAAACGAGAACTGTGTGCTTCTATTACTGGACTTTGGAGCGGATCCCAACAGTAGAGATTCAGACGGGATTGTGCCATTATGGGAGGCGATACTAGGTGGCCATGAGGCAGTAGTGCAGCTACTTATAGACAATGGTGCTAATCTCCGATCAGGAGATGTGGGTCACTTCGCGTGTACTGCCGCAGAGCAAAACAACCTCCAGTTGCTCAAAGAGATTCTCCGATATGGCGGAGACGTTTTGAGTTCCAGGAACAATGGAACGACTGCTTTACATGTTGCTGTTTGTGAAGACAACATTGAGATTGTCAAGTTCCTTCTTAAACAAGGAGCTGATATTGACAAACCAGATGTCCATGGATGGACTCCAAGAGATCTAGCAGACCAACAGGGACATGAAGAAATTAAAAACCTCTTCCAGACAATAAAAGAATTGAAAACTCAATCTGTCGTTGCCATTCCCGAGAAGCAGAAAGCGATTCGCTTCCTTGGAAGATTTACAAGCGAGCCTATGATTCTTCCTTCACCTCAGGAAGGAAATGATGGTTCATGGGCGGGTCAATCTCGTCCACGACGTAGGACTAACAACTTCCATAACTCATTGTTTGGAATCATGTCAGCAGCACATACAGGCGAGAAAGACATGAGTTTTGCTGATCACCAAACCAGAGGAGAGAAATCTGGAACCAACCCAGCAAGGGTGATAATCAGCTGTCCAGAGATTGGCGAAGTAGCTGGGAAGGTAGTGCTGCTTCCAGAAAGCTTCAACGAGCTGCTTGAGATTGGTTCCATGAAATATGGGATTATGGCTTCAAAGGTATTGAACAAAGATGGAGCTGCCATTGAAGATATAGAGGTCATTAGGGACGGCGATCAGCTTATTTTTGTCAGCAATGGAGGAACCATATAA 2664 43.21 MDAVRNRGPFRVSVCGQEELEQLSRDGSQFSLSTGILPSLGARSNRRVKLRRFVISPYDHRYRIWETFLVVLVVYTAWVSPFEFGFLKKPQSPLSITDNVVNGFFAVDIVLTFFVAYLDKSTYLLVDEPKKIALKYASSWLVFDVISTIPSELAHKISPSPLRSYGLFNMLRLWRLRRVSALFSRLEKDRNYNYFWVRCAKLVCVTLFAVHCAACFYYLLAARYHDPKRTWIGASMENFLEQSLWIRYVTSIYWSITTLTTVGYGDLHPVNTREMVFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAHRNQLPVRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLVDKVYLFRGVSNDLIFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQASLFIEALGFSECWVVGEAKTGELCGEIGVLCYRPQLFTVRTKRLSQLLRLNRTAFLNIVQSNVGDGTIIMNNLLQHLKDVKDKDPIMEGVLLETENMLARGRLDLPLSLCFATLRGDDLLLHQLLKRGLDPNESDNNGRTSLHIAASKGNENCVLLLLDFGADPNSRDSDGIVPLWEAILGGHEAVVQLLIDNGANLRSGDVGHFACTAAEQNNLQLLKEILRYGGDVLSSRNNGTTALHVAVCEDNIEIVKFLLKQGADIDKPDVHGWTPRDLADQQGHEEIKNLFQTIKELKTQSVVAIPEKQKAIRFLGRFTSEPMILPSPQEGNDGSWAGQSRPRRRTNNFHNSLFGIMSAAHTGEKDMSFADHQTRGEKSGTNPARVIISCPEIGEVAGKVVLLPESFNELLEIGSMKYGIMASKVLNKDGAAIEDIEVIRDGDQLIFVSNGGTI 887
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2647001 2653577 + CmaCh10G005780.1 Cma10g00578 301894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00578 887 Gene3D - 63 301 - -
Cma10g00578 887 PRINTS Ankyrin repeat signature 687 701 IPR002110 GO:0005515
Cma10g00578 887 PRINTS Ankyrin repeat signature 575 590 IPR002110 GO:0005515
Cma10g00578 887 Pfam KHA, dimerisation domain of potassium ion channel 818 880 IPR021789 -
Cma10g00578 887 ProSiteProfiles Ankyrin repeat region circular profile. 671 702 - -
Cma10g00578 887 SUPERFAMILY Voltage-gated potassium channels 57 301 - -
Cma10g00578 887 PRINTS EAG/ELK/ERG potassium channel family signature 98 108 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma10g00578 887 PRINTS EAG/ELK/ERG potassium channel family signature 292 301 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma10g00578 887 PRINTS EAG/ELK/ERG potassium channel family signature 274 285 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma10g00578 887 PRINTS EAG/ELK/ERG potassium channel family signature 75 82 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma10g00578 887 PRINTS EAG/ELK/ERG potassium channel family signature 109 118 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma10g00578 887 PRINTS EAG/ELK/ERG potassium channel family signature 248 265 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma10g00578 887 SMART ANK_2a 607 636 IPR002110 GO:0005515
Cma10g00578 887 SMART ANK_2a 574 603 IPR002110 GO:0005515
Cma10g00578 887 SMART ANK_2a 638 667 IPR002110 GO:0005515
Cma10g00578 887 SMART ANK_2a 671 700 IPR002110 GO:0005515
Cma10g00578 887 SMART ANK_2a 541 570 IPR002110 GO:0005515
Cma10g00578 887 SUPERFAMILY cAMP-binding domain-like 305 514 IPR018490 -
Cma10g00578 887 CDD CAP_ED 380 499 IPR000595 -
Cma10g00578 887 ProSiteProfiles Ankyrin repeat profile. 671 703 IPR002110 GO:0005515
Cma10g00578 887 ProSiteProfiles KHA domain profile. 818 887 IPR021789 -
Cma10g00578 887 ProSiteProfiles Ankyrin repeat profile. 574 606 IPR002110 GO:0005515
Cma10g00578 887 Gene3D Jelly Rolls 345 520 IPR014710 -
Cma10g00578 887 ProSiteProfiles cAMP/cGMP binding motif profile. 380 496 IPR000595 -
Cma10g00578 887 PANTHER K+ TRANSPORTER 1-RELATED 7 883 - -
Cma10g00578 887 MobiDBLite consensus disorder prediction 756 777 - -
Cma10g00578 887 ProSiteProfiles Ankyrin repeat region circular profile. 574 605 - -
Cma10g00578 887 ProSiteProfiles Ankyrin repeat region circular profile. 607 638 - -
Cma10g00578 887 SUPERFAMILY Ankyrin repeat 545 724 IPR036770 -
Cma10g00578 887 PANTHER POTASSIUM CHANNEL AKT1 7 883 IPR045319 GO:0005249|GO:0006813
Cma10g00578 887 SMART cnmp_10 380 511 IPR000595 -
Cma10g00578 887 Pfam Ion transport protein 63 307 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cma10g00578 887 ProSiteProfiles Ankyrin repeat profile. 607 639 IPR002110 GO:0005515
Cma10g00578 887 Pfam Cyclic nucleotide-binding domain 400 499 IPR000595 -
Cma10g00578 887 Pfam Ankyrin repeats (3 copies) 546 635 IPR002110 GO:0005515
Cma10g00578 887 Pfam Ankyrin repeats (3 copies) 645 701 IPR002110 GO:0005515
Cma10g00578 887 Gene3D - 542 726 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01541 Cma-Chr1:10763372 Cma10g00578 Cma-Chr10:2647001 2.17E-09 dispersed
Cma09g00474 Cma-Chr9:2084472 Cma10g00578 Cma-Chr10:2647001 0 dispersed
Cma10g00578 Cma-Chr10:2647001 Cma13g00555 Cma-Chr13:5665470 0 dispersed
Cma14g00564 Cma-Chr14:2822452 Cma10g00578 Cma-Chr10:2647001 1.23E-14 dispersed
Cma14g00236 Cma-Chr14:1036657 Cma10g00578 Cma-Chr10:2647001 2.34E-12 transposed
Cma10g00578 Cma-Chr10:2647001 Cma11g00553 Cma-Chr11:2667971 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00578 K21867 - csv:101220784 1615.9