Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma10g00580 | ATGTTAGGGGAAGTACAATTGGAGTCATCAATTGGCCAAACCCCTAGTGACTCTGATCCTCTGCTAGAGAATCAGCCCGATTCATCCCATGAAACCTCTGATGAAATTAAGAACGAGGATACTGAAGCTGGTTCCATTCCTTGTTGTCGTATTTGCCTAGAGAACGATGCCGAACCAGAAGATGAACTGATTTCTCCATGCATGTGCAAAGGCACACAGCAGTTTGTCCATCGATCTTGTCTTGATCATTGGCGCTCCGAAGGGTTTGCTTTCTCGCATTGCACAACATGCAAAGCTCAATTTCACCTGCAAGTTTCCTTATTTGAGGACAACTCTTGGCGTAAAGTTAAATTCAGGCTTTTTGTGGCAAGAGATGTCCTCCTCGTATTTCTAGCTGTACAAACTTTAATAGCGGCAATGGGTGGTTATGCATATATTATGGACAAAGACGGGGCATTCAGGAATTCTTTCAATGATGGATGGGACCGTATTCTGTCCAAACATCCTATTCCGTTTTATTACTGTATCGGGGTCCTGGCCTTCTTTGTTCTGCTCGGATTCTTCGGCCTCATACTACATTGTTCCTCCCTGAATAGTAATGATCCACGAGTTGCTGGATGTCACAACTGTTGCTATGGATGGGGCATCTTGGATTGTTTCCCTGCGTCTATGGAGGCCTGCTTTGCACTTGTTATTGTCTTCGTTGTTATCTTTGTAATCCTTGGCATAGCTTATGGTTTCCTTGCTGCCACTATGGGTATTCAAAGAATCTGGCAAAGGCATTACCACATTCTCACCAAAAGGGAGCTGACTAAAGAATACGTGGTGGAGGATCTTCATGGTTGTTATACTCCTCCAAAATTGGAACCAGAACACGAACAGCACTTGAAAATGCTACAGCTTCTGTAA | 909 | 43.89 | MLGEVQLESSIGQTPSDSDPLLENQPDSSHETSDEIKNEDTEAGSIPCCRICLENDAEPEDELISPCMCKGTQQFVHRSCLDHWRSEGFAFSHCTTCKAQFHLQVSLFEDNSWRKVKFRLFVARDVLLVFLAVQTLIAAMGGYAYIMDKDGAFRNSFNDGWDRILSKHPIPFYYCIGVLAFFVLLGFFGLILHCSSLNSNDPRVAGCHNCCYGWGILDCFPASMEACFALVIVFVVIFVILGIAYGFLAATMGIQRIWQRHYHILTKRELTKEYVVEDLHGCYTPPKLEPEHEQHLKMLQLL | 302 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 2653003 | 2656493 | - | CmaCh10G005800.1 | Cma10g00580 | 301896 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma10g00580 | 302 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 32 | 111 | IPR013083 | - | |
| Cma10g00580 | 302 | SUPERFAMILY | RING/U-box | 47 | 102 | - | - | |
| Cma10g00580 | 302 | CDD | RING_CH-C4HC3_MARCH | 49 | 98 | - | - | |
| Cma10g00580 | 302 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 41 | 104 | IPR011016 | GO:0008270 | |
| Cma10g00580 | 302 | MobiDBLite | consensus disorder prediction | 7 | 27 | - | - | |
| Cma10g00580 | 302 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 1 | 302 | - | - | |
| Cma10g00580 | 302 | Pfam | RING-variant domain | 49 | 97 | IPR011016 | GO:0008270 | |
| Cma10g00580 | 302 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
| Cma10g00580 | 302 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 1 | 302 | - | - | |
| Cma10g00580 | 302 | SMART | ringv_2 | 48 | 98 | IPR011016 | GO:0008270 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma10g00580 | Cma-Chr10:2653003 | Cma14g01188 | Cma-Chr14:9513675 | 7.98E-38 | dispersed | |
| Cma03g00789 | Cma-Chr3:6088094 | Cma10g00580 | Cma-Chr10:2653003 | 1.33E-44 | transposed | |
| Cma10g00580 | Cma-Chr10:2653003 | Cma11g00552 | Cma-Chr11:2665204 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma10g00580 | - | - | csv:101220313 | 592.423 |