Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00590 ATGGCTACAGTTTTTTACTTTCCCCCCCATCTCCCATTTTTCCTAATTTCCCTTCTTTTTCTTCTTCATTCTGTTCAATCTGAGCCCTCCGCCGACAAGGAAGCTCTTCTTGATTTCTTCAATAAAGTCCCCCATGGCCCTCGTCTTCAATGGAATGCTTCCGCCTCTGCCTGTACTTGGGTTGGAGTTGTCTGTGATGCCACTCAGTCCTTTGTTTTTGCTCTCCGGTTACCTGCGGTTGGGCTTCTTGGTCCGATTCCGGCTGGTACTCTCGGTCGGTTGAATCGCCTTCGAGTTCTTAGTCTCCGGTCGAATGGGATCTCTGGGGGTTTGCCGGCGGATTTTTCTAATTTGACATTTCTTCGAAGTCTTTTTCTCCAAGACAACCAGCTTTCCGGCGATTTTCCAGTGAGTGTGACTCAGTTGACTCGGTTGACTCGCCTCGACCTCTCGTCGAACAATTTCTCTGGTTCGATTCCGTTTTCGGTGAATAATCTGACTCAGTTGACTGGGCTTTTCTTGGAGAATAATGGGTTTTCGGGTTCTCTGCCGAGTATTCCGGCGATTAGTCTAACGCACTTCAATGTATCGAATAATAAGCTCAATGGATCCATTCCCGAAACGCTAGCGAAATTTTCTGCTTCATCTTTTGCTGGGAATTTAGCTCTCTGCGGTGGTCCATTGCCGTCGTGCAACCCGTTTTTTCCATCCCCTGCTCCGTCACCGACGTCCGCCTTGAAACCCCCACAATTTCCCGTCGAGAAGAAATCGAGAAAGCTCTCAATCGCCGCCATTGTCGGAATTGTCGTTGGCGCTGCTTTTTTCGCGTTTCTATTGCTGTTTCTTCTCCTATTTTGCCTTCGAAAGCGCGAGCGGAGGCAACCGGCGAAGCCACCGACTACGGTGGTTGCTACTCGATCTGTGCAGGCGGAGGCCGGGACATCGTCTTCGAAAGACGACATCACCGGCGGATCAGTGGAGACAGAGAAAAACAAATTAGTGTTCTTCGAGGGTGGGATTTACAGCTTCGACTTGGAGGACTTGTTGAGAGCTTCGGCGGAGGTTTTAGGAAAAGGAAGTGTCGGAACGTCGTACAAGGCGGTGCTGGAAGAAGGGACCACCGTCGTGGTGAAGAGATTGAAAGATGTGGTGGTAACGAAGAAGGAGTTCGAGACGCAAATGGAGGCTGTGGGAATCATTAACCATGAAAATGTGGTTCCTCTCAGAGCTTTCTACTTCTCCAGAGATGAGAAATTGCTTGTTTCCGATTACATGGCCGCCGGCAGCCTTTCCTCTTCCCTTCACGGAAGCAGAGGATCCGGCCGTACGCCGCTTGACTGGGACAACCGGATGAAAATCGCATTAAGCGTGGCAAGAGGATTGGCTCACCTCCACGTGTCAGGAAAACTCATCCACGGCAACATTAAATCGTCGAACATTCTCCTCCGTCCCAACCACGATGCCGCCGTTTCAGACTTCGGCCTTAACCCTCTCTTTGGCACCTTAACGCCACCCAACCGGATTGCTGGTTACCGCGCGCAGGAGGTTGTCGAAACCCGTAAGGTCACGTTCAAGTCCGACGTGTACAGTTTTGGCGTTTTGCTGTTGGAACTTCTCACCGGGAAATCGCCAAATCAATCGTCGTTGGGCGAAGAAGGGATTGATCTTCCGCGGTGGGTCCAGTCGGTGGTTCGAGAGGAATGGACGGCGGAGGTTTTTGATGTGGAGTTGATGAGACACCACAATATCGAAGAAGAGATGGTTCAGCTTTTACAAATTGCCATGTCCTGCGTCGCCACCATGCCGGACCAGCGCCCGTCGATGCAGGAAGTGGTTCGTATGATTGAGGATCTAAACCGGGTTGAGACCGACGGTAGCTTACGCCAGTCATCCGATGATCCATCTAAAGGGTCGGAGGGCCACACGCCGCTGTCGGAGTCCAGAACCACCCCTCCCGGAGCCGGTGTACCACCGTAG 1977 51.64 MATVFYFPPHLPFFLISLLFLLHSVQSEPSADKEALLDFFNKVPHGPRLQWNASASACTWVGVVCDATQSFVFALRLPAVGLLGPIPAGTLGRLNRLRVLSLRSNGISGGLPADFSNLTFLRSLFLQDNQLSGDFPVSVTQLTRLTRLDLSSNNFSGSIPFSVNNLTQLTGLFLENNGFSGSLPSIPAISLTHFNVSNNKLNGSIPETLAKFSASSFAGNLALCGGPLPSCNPFFPSPAPSPTSALKPPQFPVEKKSRKLSIAAIVGIVVGAAFFAFLLLFLLLFCLRKRERRQPAKPPTTVVATRSVQAEAGTSSSKDDITGGSVETEKNKLVFFEGGIYSFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVVTKKEFETQMEAVGIINHENVVPLRAFYFSRDEKLLVSDYMAAGSLSSSLHGSRGSGRTPLDWDNRMKIALSVARGLAHLHVSGKLIHGNIKSSNILLRPNHDAAVSDFGLNPLFGTLTPPNRIAGYRAQEVVETRKVTFKSDVYSFGVLLLELLTGKSPNQSSLGEEGIDLPRWVQSVVREEWTAEVFDVELMRHHNIEEEMVQLLQIAMSCVATMPDQRPSMQEVVRMIEDLNRVETDGSLRQSSDDPSKGSEGHTPLSESRTTPPGAGVPP 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2696267 2699031 - CmaCh10G005900.1 Cma10g00590 301906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00590 658 PANTHER OS05G0480400 PROTEIN 13 636 - -
Cma10g00590 658 SUPERFAMILY L domain-like 47 212 - -
Cma10g00590 658 MobiDBLite consensus disorder prediction 630 649 - -
Cma10g00590 658 Gene3D Phosphorylase Kinase; domain 1 317 424 - -
Cma10g00590 658 MobiDBLite consensus disorder prediction 296 324 - -
Cma10g00590 658 MobiDBLite consensus disorder prediction 619 658 - -
Cma10g00590 658 Gene3D Transferase(Phosphotransferase) domain 1 425 636 - -
Cma10g00590 658 SUPERFAMILY Protein kinase-like (PK-like) 354 615 IPR011009 -
Cma10g00590 658 PANTHER OS05G0588300 PROTEIN 13 636 - -
Cma10g00590 658 ProSiteProfiles Protein kinase domain profile. 350 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00590 658 Gene3D Ribonuclease Inhibitor 30 187 IPR032675 -
Cma10g00590 658 MobiDBLite consensus disorder prediction 300 322 - -
Cma10g00590 658 Pfam Protein kinase domain 353 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00590 658 Gene3D Ribonuclease Inhibitor 188 234 IPR032675 -
Cma10g00590 658 Pfam Leucine Rich Repeat 96 118 IPR001611 GO:0005515
Cma10g00590 658 Pfam Leucine rich repeat N-terminal domain 30 66 IPR013210 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g01321 Cma10g00590 CCT
Cma10g00590 Cma12g01230 CCT
Cma10g00590 Cma11g00586 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00590 Cma-Chr10:2696267 Cma20g00302 Cma-Chr20:1479484 0 dispersed
Cma10g00590 Cma-Chr10:2696267 Cma11g00586 Cma-Chr11:2810031 0 wgd
Cma10g00590 Cma-Chr10:2696267 Cma12g01230 Cma-Chr12:9622730 0 wgd
Cma10g00590 Cma-Chr10:2696267 Cma05g01321 Cma-Chr5:9993107 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68844 PF00069 Pkinase 6.60E-35 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00590 - - cmo:103501524 1047.34