Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00602 ATGAATCCCAACTCCCATTTCAACATCTCACCCCTCCTCCTCCTCCTCTTCCTTCCCGCATTCCTCCGCCTCGCCGCCGCCCTCCCCGCCGTCAGCCATGGCAGCCTCTCTGACGCTGAAGCTCTCTACATCCGCCACCGCCAGCTTCTGTACTACAGAGACGAGTTTGGTGACCGTGGCGAAGAAGTCACTGTGGACCCATCTCTGGTTTTCGAAAACGGGAGGATTAGAAATGCTTACATTGCACTTCAGGCTTGGAAACTAGCCATTTTATTCTGCGGTACTTTACCCCACAGATTTGATCGTCTCAAGTTGCTACACGAATTGGATCTCAGTAATAACCGGTTCGCTGGGAAGTTCCCCGGCGTGGTTCTCAAGCTTCCGGCGCTCAAGTTTTTGGATCTGAGGTTTAACGAATTCGAAGGAAATGTACCCAGAGAGCTGTTCGATAAGGATTTAGACGCCATTTTTATTAACCACAACAGATTCAGATTCGAACTGCCGGATAATTTCGGAAATTCGCCGGTGTCGGTCATTGTTCTTGGGAACAATAAGTTCCATGGGTGTGTGCCTTCGAGCTTGGGCAACATGACGAGGCTGAATGAGATCATTATGATGAACAATGGGCTTAATTCTTGCTTGCCGCCAGAAATTGGGGCGTTGAAGAACTTGACGGTGTTCGATGTAAGTTCCAATGAGCTGGTGGGTCCGTTGCCGGAGACATTTGGAGGGCTTGCGAGTTTGGAGCAACTCAATGTGGCTAATAATTTTCTTTCTGGGACGATTCCGGAGAGTATTTGTGATTTGCCTAAGCTTCAGAACTTTACGTTCTCGAATAACTTCTTCTCCGGTGAGCCGCAGACGTGTTTGAGGGTTCCGGATTTCAGTGATCGGAGGAATTGCTTGACTGGACGGCCGGCGCAGCGGCCGAGTGGGCAATGTAAGGCATTCTTTTCGAGGCATGTTGATTGTAATGCGTTTAAATGCGGTGCTTCTTCTGTTTCGCCTTCTACTCCATTTACTCCGCCGGTGGTTTCGCCCTCTTCACCTCCGTCACCGGCAGGGGAGGTGTCTCCTCCATCGCCGCCGCTCTCGCCCCATTTTCCTCCTCTGTCGCCACATTCGCCACCGTCGGCACCGCCATTGGTTTATTCTCCGCCGTCACCTTCCTCTCCGTCTACACCTACAACCCCTTCAACGCCATCTCAAGGTCATGCTCCGCCGTCATTACCCTCACCCTCATCGCCCCCTAAAGGTCAGTTTCCGCCGGCATTACCTCCGCCGACTGATCCCTTACCATCCTCACCACCCCACGGCCATACTCCGCCGGGTCCACCTTCGCCTTCCTCTCCGTCTACACCCACAACCCCTTCAACGCCGCCTCAAGATCATGCTCCGCCGTCATTACCCTCACCCTTCTCGCCCCCAAAAGGTCATCCACCGCCGGCATTACTTCCGCCGTCTGAACCCTTACCATCTTCACCACCCCACGGCCATACTCCNCCGGGACCACCGTCGCCTTCCTCTTCGTCTACGCCTACAACCCCTTCAACGCCGCCTCAAGGTCATGCTCCACCGTCTTTACCCTCACCCTTATCGCCCCCAAAAGGTCATCCTCCGCCGGCATTACCTCCGCCGTCTGAGCCCTTACCATCCTCACCACCCCACGGCCATACTCCTCCGGGTCCACCTTCTTCGTCCGAACCTTCGCCATCATCGCCGCCACAAGATCACCCTCCACCAACTCCCTCGCCGTCCGAACCGTCACCTTCAACGCCGCCCATAGGTCACACTCCAGCCATTCCTCCTTCACCATCCGGACCTGCACCTCCATCACCGCCACAAGTCCACAATCCGCCGGTCAAGCCTTCTCCTCCAGTNGCATCATCACCACCAGCACCATCATTCCCAGTTCACACTCCTCCGCCTCCGCCACATTTCCCTGATTTCCCTTCGCCACCATCCACACAACTCCCTGTCTACTGTCCACGATCCCCATATCCACCATCTCCTCCATCCTACTCCCCAAGCCCACCTCTCCAACACCCCACCTCCCCTCCGCCGCCATTACCTGTTCATTCTCCCCCTCCCCCTGTTTATACATCCCCGTCGCCACTTCCTCTTCCTTGCATACAATCTCCTCCACCTCCCCCACCAGATACTCAATACTCCGAACCACCGCCAACACCATCGTCTCCGATTCCCTACAATTTCCCACCACCGCCGTCTCCATCGCCCCCACCGCCTCCAAGCCCTGTATACGGAGGTCCCCTGCCACCAATCTACGGAGTCCCATACGCGTCTCCTCCGCCACCACCCTTGTATTAA 2328 55.46 MNPNSHFNISPLLLLLFLPAFLRLAAALPAVSHGSLSDAEALYIRHRQLLYYRDEFGDRGEEVTVDPSLVFENGRIRNAYIALQAWKLAILFCGTLPHRFDRLKLLHELDLSNNRFAGKFPGVVLKLPALKFLDLRFNEFEGNVPRELFDKDLDAIFINHNRFRFELPDNFGNSPVSVIVLGNNKFHGCVPSSLGNMTRLNEIIMMNNGLNSCLPPEIGALKNLTVFDVSSNELVGPLPETFGGLASLEQLNVANNFLSGTIPESICDLPKLQNFTFSNNFFSGEPQTCLRVPDFSDRRNCLTGRPAQRPSGQCKAFFSRHVDCNAFKCGASSVSPSTPFTPPVVSPSSPPSPAGEVSPPSPPLSPHFPPLSPHSPPSAPPLVYSPPSPSSPSTPTTPSTPSQGHAPPSLPSPSSPPKGQFPPALPPPTDPLPSSPPHGHTPPGPPSPSSPSTPTTPSTPPQDHAPPSLPSPFSPPKGHPPPALLPPSEPLPSSPPHGHTPPGPPSPSSSSTPTTPSTPPQGHAPPSLPSPLSPPKGHPPPALPPPSEPLPSSPPHGHTPPGPPSSSEPSPSSPPQDHPPPTPSPSEPSPSTPPIGHTPAIPPSPSGPAPPSPPQVHNPPVKPSPPVASSPPAPSFPVHTPPPPPHFPDFPSPPSTQLPVYCPRSPYPPSPPSYSPSPPLQHPTSPPPPLPVHSPPPPVYTSPSPLPLPCIQSPPPPPPDTQYSEPPPTPSSPIPYNFPPPPSPSPPPPPSPVYGGPLPPIYGVPYASPPPPPLY 775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2780772 2788301 - CmaCh10G006020.1 Cma10g00602 301918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00602 775 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 5 11 91 - -
Cma10g00602 775 SMART LRR_typ_2 127 151 IPR003591 -
Cma10g00602 775 SMART LRR_typ_2 245 269 IPR003591 -
Cma10g00602 775 SMART LRR_typ_2 221 244 IPR003591 -
Cma10g00602 775 MobiDBLite consensus disorder prediction 332 762 - -
Cma10g00602 775 SUPERFAMILY L domain-like 91 290 - -
Cma10g00602 775 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 92 479 - -
Cma10g00602 775 MobiDBLite consensus disorder prediction 340 762 - -
Cma10g00602 775 Gene3D Ribonuclease Inhibitor 89 304 IPR032675 -
Cma10g00602 775 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 5 92 479 - -
Cma10g00602 775 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 11 91 - -
Cma10g00602 775 Pfam Leucine rich repeat 223 280 IPR001611 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g01334 Cma10g00602 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00602 Cma-Chr10:2780772 Cma09g00199 Cma-Chr9:826607 5.85E-93 dispersed
Cma10g00602 Cma-Chr10:2780772 Cma11g00594 Cma-Chr11:2842285 4.35E-68 wgd
Cma10g00602 Cma-Chr10:2780772 Cma05g01334 Cma-Chr5:10085979 6.05E-07 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00602 - - cpep:111779752 560.451