Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00603 ATGGGTTCCTTCAAAAGTGACCAAAATGTGAGCTTTGCTGCTCCGAGGGCGTTTGGGAAGAGGCTGAAATCGGATCTGAAAGAGACGTTTTTCCCTGATGATCCGTTCAGGCGGTTTGGAGATGGCGGAGGGGCTGTGCAGCGAGTGAAAAAGGTCCTCAAATATTTCATCCCCATATTGGAATGGCTTCCTAAATACAACTTGAGTATGTTTAAGTACGATTTGCTTGCTGGTATTACCATTACCAGCCTCGCTATTCCTCAAGGCATCAGCTACGCCAAGCTCGCCACCCTCCCTCCCATCATTGGCCTTTATTCCAGCTTCGTTCCTCCCCTTGTATACGCGGTGTTTGGAAGCTCCAAGCATCTGGCGGTGGGGACGGTGGCGGCATGCTCCTTGCTCATATCGCAAATCATCGGACGAGTGGCGTCGCCGGAAGAAGAACCCACATTGTATCTCCACTTGGTTTTCACCGCCACCCTTGTTACCGGCGTCTTTCAGGCCACCTTAGGCTTTCTACGACTGGGAATTTTGGTGGATTTCTTATCGCACTCGACAATTCTTGGGTTTATGGGAGGGACGGCTGTGATCATTTCCCTGCAACAGCTAAAAGGCATGCTTGGACTCACTCATTTCACCTCTAAAACTGACGTTTTTTCGGTACTTCACGCAGTGTTCACCCGTACAAATGAGTGGAAATGGCAAAGTGCTGTTGTCGGCATCGTCTTCCTTCTATTCCTTCAGTTTACAAGGTTCCTGAGAAACAGAAACCCCAAGCTATTCTGGGTGTCAGCGATGGCTCCAATGGTGACAGTGGTAGTCGGGTGTTTGTTTGCTTATTTCATCAATGGAAGTCAGCATGGAATCTTAACTGTGGGTCACTTGAGCAAAGGAATAAACCCTGTTTCTATTCACTTCCTCAACTTTGACTCCAAATATATATCAGTTGTCGTACAAACTGGCTTGATCACTGCCCTTGTGGCTTTGGCTGAAGGAATAGCAATTGGTCGGAGCTTTGCAATCATGAAAAATGAACAAATCGATGGGAACAAGGAGATGGTAGCCTTTGGTTTAATGAACATCCTCGGATCTTTCACTTCCTGCTACCTAACCACTGGGCCTTTCTCAAAGACTGCAGTGAACTTCAATGCTGGGTGTAGGACAGCCATGTCAAACATAGTCATGGCGATCTTCATGGCTCTCACCCTCCTCTTTCTAGCTCCTCTCTTCAGCTACACACCTCTTGTAACCCTTTCCGCCATTATCATGTCCGCCATGTTTGGTCTCATCAAGTATGAAGAAATGTATCATCTTCTCAAGGTCGACAAGTTTGATTTCTGCATATGTATGGCGGCTTTCTTGGGCGTTGCCCTCTTGAGCATGGACGTTGGCATCATGCTTTCGGTGGGACTCGCTTTGCTGAGAGCTCTGCTTTACATGGCTAGACCAGCCACTTGCAAACTCGGGAAAATAACAAACTCCAGTTTGTATAGAGACGTGGAACAGTACCCAAATGCAACAAGAATCCCTGGAATTATTGTTCTTCAACTTGGTTCCCCTGTTTATTACGCCAATGCCAACTACATCAGAGAAAGGATTTTCAGATGGGTTCGTGATGAGCAGACCATATCTGATACCAACGATGGATCCGTCGAACATGTACTGCTGGAGTTGAGCGGAGTTACCTCCATCGACATGACAGGGATCGAAACTCTAGTTGAAATCCACAGATCATTACATGCAAATGGAATCCAGATGGGAATTATAAACCCAAGAATAGTAGTGATGGAGAAGATGATAGCTTCGGATTTCACAGAAACAATCGGAAAAGAGAACATTTATTTGTCGGTAGACGATGGAGTGGAAAGGTGCAGAGATTTGGTTCCCAAATTAAAGCAAACAGGTGGAAGTGATGAAACTTCCATTAGTTTTGCAATGGAGCAGCTGCACAGGAATTTGAATCTGCAATAA 1971 46.12 MGSFKSDQNVSFAAPRAFGKRLKSDLKETFFPDDPFRRFGDGGGAVQRVKKVLKYFIPILEWLPKYNLSMFKYDLLAGITITSLAIPQGISYAKLATLPPIIGLYSSFVPPLVYAVFGSSKHLAVGTVAACSLLISQIIGRVASPEEEPTLYLHLVFTATLVTGVFQATLGFLRLGILVDFLSHSTILGFMGGTAVIISLQQLKGMLGLTHFTSKTDVFSVLHAVFTRTNEWKWQSAVVGIVFLLFLQFTRFLRNRNPKLFWVSAMAPMVTVVVGCLFAYFINGSQHGILTVGHLSKGINPVSIHFLNFDSKYISVVVQTGLITALVALAEGIAIGRSFAIMKNEQIDGNKEMVAFGLMNILGSFTSCYLTTGPFSKTAVNFNAGCRTAMSNIVMAIFMALTLLFLAPLFSYTPLVTLSAIIMSAMFGLIKYEEMYHLLKVDKFDFCICMAAFLGVALLSMDVGIMLSVGLALLRALLYMARPATCKLGKITNSSLYRDVEQYPNATRIPGIIVLQLGSPVYYANANYIRERIFRWVRDEQTISDTNDGSVEHVLLELSGVTSIDMTGIETLVEIHRSLHANGIQMGIINPRIVVMEKMIASDFTETIGKENIYLSVDDGVERCRDLVPKLKQTGGSDETSISFAMEQLHRNLNLQ 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2788367 2792258 - CmaCh10G006030.1 Cma10g00603 301919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00603 656 PANTHER SULFATE TRANSPORTER 5 629 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cma10g00603 656 SUPERFAMILY SpoIIaa-like 504 625 IPR036513 -
Cma10g00603 656 TIGRFAM sulP: sulfate permease 58 619 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cma10g00603 656 Pfam Sulfate permease family 71 452 IPR011547 GO:0016021
Cma10g00603 656 ProSiteProfiles STAS domain profile. 502 624 IPR002645 -
Cma10g00603 656 Pfam STAS domain 503 619 IPR002645 -
Cma10g00603 656 Gene3D STAS domain 482 627 IPR036513 -
Cma10g00603 656 CDD STAS_SulP_like_sulfate_transporter 503 617 - -
Cma10g00603 656 ProSitePatterns SLC26A transporters signature. 100 121 IPR018045 GO:0008271|GO:0008272
Cma10g00603 656 PANTHER SULFATE TRANSPORTER 3.5-RELATED 5 629 IPR030316 GO:1902358
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00603 Cma-Chr10:2788367 Cma14g01741 Cma-Chr14:12745410 0 dispersed
Cma10g00603 Cma-Chr10:2788367 Cma11g00593 Cma-Chr11:2835420 0 wgd
Cma10g00603 Cma-Chr10:2788367 Cma17g00816 Cma-Chr17:6397306 0 wgd
Cma10g00603 Cma-Chr10:2788367 Cma08g00684 Cma-Chr8:4212615 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00603 K17471 - csv:116402148 1072.0