Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00604 ATGGAGGAGAATCACTGCAATGGAAATTCTCAATCCCAGCTCAATATACCCAAAATCAAGTTCACAAAGCTCTTTATCAATGGCCAATTCCTTGACTCTGTTTCAGGAAAAACTTTGGAGACCATAGATCCAAGAACTGGGGAGGTTATCGCGTCGGTGGCCGCCGGGGATAAAGAAGACGTGGATTTGGCCGTGAAAGCCGCCCGTGAGGCTTTCGATCATGGCCCTTGGCCACGCATGTCCGGCGCCGAGAGGGGGAGGATAATGACAAAACTAGCGGAATTGATAGATGCACACGTGGAGGAACTGGCAGCGTTGGATACCATCGACGCTGGAAAATCGTTTCATCTGGGTAAGATAGTGGATATACCCGGGGCTGCAACTACGCTGCGGTACTACGCAGGTGCAGCGGATAAAATTCACGGCAAGATATTGAAAATGTCAAGGCCGCTTCATGGCTACACGTTACTGGAGCCGATTGGAGTGGTGGGCCATATCATACCGTGGAACTTTCCGACGACCATGTTCTGGTTGAAAGTCAGCCCAGCGTTGGCTGCCGGATGTACCATGATCGTCAAGCCCGCCGAACAGACGCCCCTCTCCGCCCTGTTCTACGCTCATCTCGCCAAACTGGCTGGCATTCCAGATGGAGTACTCAACGTTGTGACTGGATATGGACCAACCGCAGGGTCCAGCATTGCATCACACATGGATATTGATAAGGTGAGCTTCACAGGATCAACCAAGGTGGGGAGGTTGATAATGCAGGCCGCAAGTGCCAGTAACCTGAAGCAAGTGTCATTGGAATTAGGAGGCAAATCCCCTCTTCTAATCTTCGATGATGCTGATATCAACAAAGCCGTCGATCTTGCTCTCCTCGCCATTTTTTACAACAAGGGAGAAATCTGCGTGGCCGGCTCCCGGGTTCTGGTTCAAGAAGGAATTTATGATGAATTCGTGAAAAAGATTAGTGAAAAGGCCAAGACGTGGGTGGTGGGAGACCCATTTGATCCTAAAGTTAATTATGGACCCCAGGTAGACAAAAAGCAACTGGATAAGATTCTCAAGTACATAGAACACGGTAAAAAAGAAGGAGCAACGCTGGTTACAGGCGGCAAGCGTATAGGCGAAGTGGGGTATTACGTAGAGCCCACAATCTTCACAGACGTCAAGGAAGACTCGCTGATTGCGCAGGATGAAATATTCGGGCCAGTTCTCTCCGTCATAAAATTCAACACGATTGAAGAGGGAATAAGGAGCGCAAACAACACCAAGTACGGGCTAGCAGCTGGGATAGTGACGAACAACATAGACATAGCCAACACGGTGTCCAGGTCCATCCGAGCGGGTACCATTTGGCTAAATTGTTACTTTGCTTTCGACGCGAGCTGCCCGTTCGGAGGGTATAAGGCGAGTGGGTTCGGAAGAGACTCTGGAATGCAGGCTATCCATAAGTATCTTCAAACCAAAGCCGTCGTCACTCCTTTGGTTAACACTCCTTGGCTTTGA 1509 49.7 MEENHCNGNSQSQLNIPKIKFTKLFINGQFLDSVSGKTLETIDPRTGEVIASVAAGDKEDVDLAVKAAREAFDHGPWPRMSGAERGRIMTKLAELIDAHVEELAALDTIDAGKSFHLGKIVDIPGAATTLRYYAGAADKIHGKILKMSRPLHGYTLLEPIGVVGHIIPWNFPTTMFWLKVSPALAAGCTMIVKPAEQTPLSALFYAHLAKLAGIPDGVLNVVTGYGPTAGSSIASHMDIDKVSFTGSTKVGRLIMQAASASNLKQVSLELGGKSPLLIFDDADINKAVDLALLAIFYNKGEICVAGSRVLVQEGIYDEFVKKISEKAKTWVVGDPFDPKVNYGPQVDKKQLDKILKYIEHGKKEGATLVTGGKRIGEVGYYVEPTIFTDVKEDSLIAQDEIFGPVLSVIKFNTIEEGIRSANNTKYGLAAGIVTNNIDIANTVSRSIRAGTIWLNCYFAFDASCPFGGYKASGFGRDSGMQAIHKYLQTKAVVTPLVNTPWL 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2795115 2798505 - CmaCh10G006040.1 Cma10g00604 301920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00604 502 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 272 461 IPR016163 GO:0016620
Cma10g00604 502 SUPERFAMILY ALDH-like 16 498 IPR016161 GO:0016491
Cma10g00604 502 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 5 502 - -
Cma10g00604 502 PANTHER DEHYDROGENASE, PUTATIVE-RELATED 5 502 - -
Cma10g00604 502 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 268 275 IPR029510 GO:0016491
Cma10g00604 502 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 26 490 IPR016162 GO:0016491
Cma10g00604 502 Pfam Aldehyde dehydrogenase family 33 492 IPR015590 GO:0016491
Cma10g00604 502 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 296 307 IPR016160 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00667 Cma-Chr2:4051800 Cma10g00604 Cma-Chr10:2795115 5.40E-111 dispersed
Cma08g01274 Cma-Chr8:7737287 Cma10g00604 Cma-Chr10:2795115 3.27E-52 dispersed
Cma10g00604 Cma-Chr10:2795115 Cma12g00001 Cma-Chr12:1241 0 dispersed
Cma10g00604 Cma-Chr10:2795115 Cma11g00601 Cma-Chr11:2875310 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00604 K12355 - csv:101219029 898.271