Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00621 ATGTCGTCTCCGTCTCCGACTTCTCCGCCGGCGCCTAGTACGACCTCACCCCTACCTCCGACCACAGACGCACCACCCCCGGAGGCCCCGTCTCTCTCACCGCCGCCTCCTGACGCTGCCTCTCAGCCTCCACCTGCTACATCCCTGCCGCCTTCTACCACTCCTTCGCCGCCGCCTCCGGACAGTGCTACTCCATCCCCGCCGCCTCCGGACAGTGCTACTCCATCCCCGCCGCCTCCGGACAGTACTACTCCATCCCCGCCTACTACTTCTCCTTTACCACCTACAGCTCCTTCGAGCTCTTCGCCGCCGCCGCCGGACAGTGCCACTCCATCTCCGCCTACTTCTTTACCGCCTACATTGCCTTCGGGCTCTTCGCCGCCTCCGCCGTCGAATTCTAGTACACCTACGAGTCCAGGAGGACATGACGCCCCGCCGTCGCATTCTGGTACACCTACGAATCCGGGAGGAAATGAGGCTCCGCCGTCTTTCTCACCGTCGTCGGGAGCTTCGGCTGGACTTGTGACGGGAGTTGTCATTGCTGGAGTGGTGGTGGTGGTTGTTGCGTNCATTCTTTTGGTTTTGTGTTTAAGAAAGAAGAGAAGACGTGACGAGGAGTCGTACTACCGGCCGCCGCCACCGGGGGCGTTTAAAGATGGCCCATATGGTCTCCAACAGCACCACTGGCAATCACATCCGCCGCCGCCGACTAATCATGTCGTCGGGACTGTACCGAAGCCGTCTCCTCCACCAGCATCACGACCCCCGCCGTCTCCTTCACCAGCATCACGACCACCGCCGTCACCTGCGATTATATACAGCAGCGGAGGATCTGGATCTTATTATTCAGGGTCTGAATATTCGCATGCTCCTGTTCCTGCTCCTGCTCCTGCTCCTGCTCCATCTTCTATTCCCTTGGGCTACTCGCAAAGCAGCTTCACTTATGAAGAGTTAGCAATGGCGACAGACAGGTTTTCAGAAGCCAATCTCCTTGGACAAGGTGGGTTTGGTTATGTGCATAAAGGAGTCCTTCCAAACGGAAAGGAAGTGGCAGTGAAACAACTCAAGGCTGGAAGTGGACAGGGAGAGCGTGAATTTCAAGCAGAAGTAGAAATAATCAGCCGTGTTCATCATAGACATCTTGTTTCCTTGGTGGGGTATTGCATCACCGGCTCCCAAAGATTGCTGGTTTATGAATTTGTTCCAAACAACACATTGGAGTTCCACTTGCACGGGAAAGGACGACCCACCATGGATTGGCCAACGAGACTCAAAATTGCTCTTGGATCTGCCAAGGGATTGGCCTACCTTCATGAGGACTGTAATCCTAAGATCATTCATCGTGACATCAAAGCTGCAAATATACTTCTGGATCTCAAATTCGAAGCAATGGTTGCAGATTTTGGGCTTGCCAAATTGTCTTCTGATGTTAATACCCATGTTTCAACTCGAGTTATGGGAACTTTCGGCTACCTTGCTCCTGAATACGCTTCAAGTGGGAAACTCACTGATAAATCAGATGTCTTCTCCTTCGGAGTGATGCTTTTGGAGATGATTACTGGACGCAGACCTGTGGATACAACTCAATCATACATGGACGATGGACTGCTCGATTGGGCAAGGCCATTACTACTTAGGGCCGCAGAAGATGGGAACTACGATGGTCTAGTAGATCCAAAGCTGCGAGATAACTACGACCATAATGAGATGGGTCGGATGATTGCTTGTGCAGCTGCCTGTGTGCGCCATTCGGCGAGGCGCCGGCCACGGATGAGTCAAGTGGTTCATGCTCTTGAAGGTGAAGCCTCGCTTTCTGATCTTAACAAAGGGGTTCAGCCTGGACATAGCACCGTCTACAGTTCTCATGGAAGCTCCGACTACGACACATCTCAGTACAATGAGGACATGAAGAACTTCAGGAAGATGGCATTGGCAAGCCAGGAGTACGGCAGCGAGTACAGCGAGCCGACGAGTGAGTATGGTTTGTATCCATCTGGGTCGAGTGGCGATGGCCAAACAACAAGGGAAATGGAAATGAGAACAATGAAGACAGAAAGTGGAGGTTCTTGA 2070 53.09 MSSPSPTSPPAPSTTSPLPPTTDAPPPEAPSLSPPPPDAASQPPPATSLPPSTTPSPPPPDSATPSPPPPDSATPSPPPPDSTTPSPPTTSPLPPTAPSSSSPPPPDSATPSPPTSLPPTLPSGSSPPPPSNSSTPTSPGGHDAPPSHSGTPTNPGGNEAPPSFSPSSGASAGLVTGVVIAGVVVVVVAXILLVLCLRKKRRRDEESYYRPPPPGAFKDGPYGLQQHHWQSHPPPPTNHVVGTVPKPSPPPASRPPPSPSPASRPPPSPAIIYSSGGSGSYYSGSEYSHAPVPAPAPAPAPSSIPLGYSQSSFTYEELAMATDRFSEANLLGQGGFGYVHKGVLPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHRHLVSLVGYCITGSQRLLVYEFVPNNTLEFHLHGKGRPTMDWPTRLKIALGSAKGLAYLHEDCNPKIIHRDIKAANILLDLKFEAMVADFGLAKLSSDVNTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSFGVMLLEMITGRRPVDTTQSYMDDGLLDWARPLLLRAAEDGNYDGLVDPKLRDNYDHNEMGRMIACAAACVRHSARRRPRMSQVVHALEGEASLSDLNKGVQPGHSTVYSSHGSSDYDTSQYNEDMKNFRKMALASQEYGSEYSEPTSEYGLYPSGSSGDGQTTREMEMRTMKTESGGS 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2859964 2862971 + CmaCh10G006210.1 Cma10g00621 301937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00621 689 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 82 678 - -
Cma10g00621 689 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 82 678 - -
Cma10g00621 689 MobiDBLite consensus disorder prediction 1 135 - -
Cma10g00621 689 ProSiteProfiles Protein kinase domain profile. 325 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00621 689 Pfam Protein tyrosine and serine/threonine kinase 329 597 IPR001245 GO:0004672|GO:0006468
Cma10g00621 689 SMART serkin_6 325 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00621 689 Gene3D Transferase(Phosphotransferase) domain 1 401 612 - -
Cma10g00621 689 MobiDBLite consensus disorder prediction 206 275 - -
Cma10g00621 689 MobiDBLite consensus disorder prediction 606 632 - -
Cma10g00621 689 MobiDBLite consensus disorder prediction 649 689 - -
Cma10g00621 689 Gene3D Phosphorylase Kinase; domain 1 302 400 - -
Cma10g00621 689 MobiDBLite consensus disorder prediction 1 171 - -
Cma10g00621 689 SUPERFAMILY Protein kinase-like (PK-like) 302 598 IPR011009 -
Cma10g00621 689 MobiDBLite consensus disorder prediction 609 632 - -
Cma10g00621 689 ProSitePatterns Protein kinases ATP-binding region signature. 331 353 IPR017441 GO:0005524
Cma10g00621 689 MobiDBLite consensus disorder prediction 650 675 - -
Cma10g00621 689 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Cma10g00621 689 MobiDBLite consensus disorder prediction 284 303 - -
Cma10g00621 689 MobiDBLite consensus disorder prediction 238 268 - -
Cma10g00621 689 MobiDBLite consensus disorder prediction 136 171 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00621 Cma12g01250 CCT
Cma10g00621 Cma11g00611 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00405 Cma-Chr2:2049807 Cma10g00621 Cma-Chr10:2859964 0 dispersed
Cma04g00778 Cma-Chr4:3963160 Cma10g00621 Cma-Chr10:2859964 4.38E-171 dispersed
Cma10g00621 Cma-Chr10:2859964 Cma11g00611 Cma-Chr11:2924930 0 dispersed
Cma10g00621 Cma-Chr10:2859964 Cma12g01250 Cma-Chr12:9778780 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68845 PF07714 PK_Tyr_Ser-Thr 1.80E-44 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00621 - - cpep:111779918 962.6