Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00622 ATGATCGGATTTTCGATTTCTTCTTCGTCTATCTCCTTCTTCGTCATCTTCGTCCCCATCTTTATCTCCATTTCTGTTTTCCAATTCAACCCCTCATCCGATCACACCGTATTCCAAACCCTAACTCGAAACTACTCACCCAACGATCCATTTACGTCCAAGAACGTCACTGATGGGAACCGAGTCTCGCAGAAGAACTACATTGTTCGCTTCGTCCAATACAGGGAGGCGAAGGAGCATCGATTTTATCTGGAGTCACGTATTAGATCGGGCGGCTGGAAATGGATCGAGAGGCGGAACCCTGCGTCCAAGTATCCAACCGATTTTGGCTTGGTATCAATTGAGGACTCGGTGGTAAGGGAGCTGGTTGAGGAGATTGAGGAATTTGAGCTTGTCAAGGACGTGAATGTCGATGCAAGCCACGTCAGGGGTTTGCTAGCGGAGGGTGGGGGTAGAATTGGGGCTTTTGTTGACGGGAAGAAGCGTCCGGGGAAGATTTTCACCTCCATGTCTTTTAACGAAGGAGGTGGGGAACGTTATACGGCAATTAGCAATGCCTCTAATAGATGGGGACGGCATCTGTCGATGCAGAGATCTCAAGTCACCTCATTATTTGGAGCAGACTCTCTTTGGGCAAAGGGGTATACTGGTTCCAAAGTCAAGATGGCTATATTCGATACTGGTATTCGTGCTAATCACCCACATTTTAGGAATATCAAGGAGCGAACAAATTGGACCAATGAAGATACTTTAAATGATAATCTTGGACATGGGACATTTGTTGCTGGTGTCATTGCTGGTGGGGATGAAGAATGTCTAGGGTTTGCTCCAGATACGGAGATATATGCTTTTCGTGTGTTTACAGATGCACAGGTGTCATACACTTCATGGTTCCTCGATGCATTCAACTATGCAATTGCTACCAATATGGATGTATTAAATTTGAGCATTGGTGGACCAGATTACTTAGATCTTCCATTTGTGGAGAAGATTTGGGAAATAACGGCAAATAATATCATCATGGTTTCTGCAATTGGGAATGATGGACCACTTTACGGGACCTTAAACAATCCTGCAGATCAGAGTGATGTCATTGGTGTTGGTGGTATCGACTACAATGATCACATTGCTTCGTTTTCCTCACGTGGCATGACTACTTGGGAGATGCCTCATGGTAATGGTCGTGTGAAGCCAGATGTTGTTGCATATGGTCGGGAAATTATGGGATCAAAAATTAGTACTGGGTGCAAAAGTTTATCAGGCACTAGTGTGGCAAGTCCTGTGGTTGCTGGTGTGGTATGTCTGCTTGTTAGTGTCATCCCTGAAAGCCAGCGGAAGACTATTTTAAATCCGGCTAGCATGAAACAAGCACTTGTTGAGGGAGCTGCAAAGCTTGCTGGTCCTAATATGTACGAGCAAGGTGCTGGCAGAGTTGATCTGTTAGAATCGTATGAAATACTTAAGAGCTACCAACCTCGGGCAAGCATCTTCCCTGGTGTTCTTGACTATACAGATTGCCCTTATACATGGCCCTTTTGTCGCCAACCTCTTTATGCTGGTGCAATGCCTATTATTTTCAATGCTACCATTTTGAATGGAATGGGTGTAATTGGCTATGTTGAAGGTCAACCAACTTGGAATCCTTCGGATGAAGAAGGAAATCTCTTAAGTATTCACTTCACTTATTCTAAGGTTATCTGGCCTTGGACTGGTTACATTGCACTTCATATGCAAATTAAGGAGGAAGGTGCACAATTTTCTGGAGAAATTGAGGGCAATGTGACTCTAACAGTATATAGTCCTCCATCTAGAGGAGAGAAGAACCGCCGGATTAGTACTTGTGTGCTACAGCTGAAGTTAAAAGTAGTTTCAACACCTCCAAGATCAAAACGAATTTTATGGGATCAATTTCATAACATCAAATATCCTCCTGGTTATATTCCTAGAGATTCCTTGGATGTACGCAATGACATTCTGGACTGGCATGGAGACCACCTGCATACAAATTTTCATATCATGTTTAACATGTTAAGAGATGCTGGATACTATGTTGAAACGCTTGGTTCTCCTCTAACATGCTTTGATGCCCGCCAATATGGGACACTTTTACTAGTGGATCTTGAAGATGAGTACTTCAAAGAGGAAATTGAAAAGTTGAGGGACGATGTTATGATTACTGGATTGGGGTTGGCTGTGTTTTCTGAATGGTATAATGTAGAAACAATGGTAAAGATGAGGTTTTTCGATGATAACACAAGAAGCTGGTGGACTCCAGTTACTGGAGGTGCAAATATTCCTGCACTAAATGATCTTTTAGCCCCATTTGGTATTGCTTTCGGGGATAAGATTTTGAATGGTGATTTTTCTATTGATGGTGAACAGAGTCGGTATGCATCAGGAACAGATATTGTGAGGTTTCCACGAGATGGTTATGTGCATAGTTTCCCTTTCATTGATAGCTCAGAGAGTGGGGCGGCTCAGAGCATTCTAACATCTAGCCTGAGTAAGGCAGACTTTCCAATTCTTGGCCTATTAGAGGCAGGAGAAGGCCGCATTGCAGTCTATGGAGATTCAAATTGTCTAGATAGCAGCCATATGGTTACAAATTGCTATTGGCTCCTGAGAAAAATATTAGATTTTACCAGTGGAAATATTAGAGATCCGGTGCTATTCACCAAGTTTTCCAAACAAAATTCACCTCTATATCTTGAAGATAACAAACTTCCATCTCGAAGAAGCGATGTAAATTTCTCTTTGTATTCTGCTGTTTCTGGAAAGGAATTGATATGCATGAGTGATTCTAGGTTTGAAGTATGGGGTACCAAGGGATACAGTGTACAGGGCAGGGGAAGGAATAGAAGGCTGCCTGGATTTCCCTTAATTGACTTGGGAAGAGACTTGAATTCTACTCCAGAAAGTTCTTTGATGGGACCTCCCAAGTTGACTTTAAAGGACCGAAGTGATAAATATGGAAACCGATACTTAAGCTTGTTCTACCGGGATGAGCCTGACATGCCTTTGATTGTTCCTAATCATTGGCTTGTTCCTGCTGTAGTTGCAGTCGCAGGGCTTTTGCTTCTTTTGAGTTTTTGGCGAATTAGACAGAAGCGCCGACGCCGACGAAGAGGATCGGGATCTGCTCCACGTTTTTCCAACCTCTAG 3162 43.14 MIGFSISSSSISFFVIFVPIFISISVFQFNPSSDHTVFQTLTRNYSPNDPFTSKNVTDGNRVSQKNYIVRFVQYREAKEHRFYLESRIRSGGWKWIERRNPASKYPTDFGLVSIEDSVVRELVEEIEEFELVKDVNVDASHVRGLLAEGGGRIGAFVDGKKRPGKIFTSMSFNEGGGERYTAISNASNRWGRHLSMQRSQVTSLFGADSLWAKGYTGSKVKMAIFDTGIRANHPHFRNIKERTNWTNEDTLNDNLGHGTFVAGVIAGGDEECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNMDVLNLSIGGPDYLDLPFVEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASFSSRGMTTWEMPHGNGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASPVVAGVVCLLVSVIPESQRKTILNPASMKQALVEGAAKLAGPNMYEQGAGRVDLLESYEILKSYQPRASIFPGVLDYTDCPYTWPFCRQPLYAGAMPIIFNATILNGMGVIGYVEGQPTWNPSDEEGNLLSIHFTYSKVIWPWTGYIALHMQIKEEGAQFSGEIEGNVTLTVYSPPSRGEKNRRISTCVLQLKLKVVSTPPRSKRILWDQFHNIKYPPGYIPRDSLDVRNDILDWHGDHLHTNFHIMFNMLRDAGYYVETLGSPLTCFDARQYGTLLLVDLEDEYFKEEIEKLRDDVMITGLGLAVFSEWYNVETMVKMRFFDDNTRSWWTPVTGGANIPALNDLLAPFGIAFGDKILNGDFSIDGEQSRYASGTDIVRFPRDGYVHSFPFIDSSESGAAQSILTSSLSKADFPILGLLEAGEGRIAVYGDSNCLDSSHMVTNCYWLLRKILDFTSGNIRDPVLFTKFSKQNSPLYLEDNKLPSRRSDVNFSLYSAVSGKELICMSDSRFEVWGTKGYSVQGRGRNRRLPGFPLIDLGRDLNSTPESSLMGPPKLTLKDRSDKYGNRYLSLFYRDEPDMPLIVPNHWLVPAVVAVAGLLLLLSFWRIRQKRRRRRRGSGSAPRFSNL 1053
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2862927 2868919 - CmaCh10G006220.1 Cma10g00622 301938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00622 1053 ProSitePatterns Serine proteases, subtilase family, histidine active site. 257 267 IPR022398 -
Cma10g00622 1053 PRINTS Subtilisin serine protease family (S8) signature 217 236 IPR015500 -
Cma10g00622 1053 PRINTS Subtilisin serine protease family (S8) signature 253 266 IPR015500 -
Cma10g00622 1053 PRINTS Subtilisin serine protease family (S8) signature 420 436 IPR015500 -
Cma10g00622 1053 Pfam Subtilase family 217 468 IPR000209 GO:0006508|GO:0008236
Cma10g00622 1053 SUPERFAMILY Subtilisin-like 203 482 IPR036852 GO:0004252|GO:0006508
Cma10g00622 1053 CDD Peptidases_S8_SKI-1_like 211 467 IPR034185 -
Cma10g00622 1053 PANTHER MEMBRANE-BOUND TRANSCRIPTION FACTOR SITE-1 PROTEASE 61 878 - -
Cma10g00622 1053 PANTHER PEPTIDASE S8 61 878 - -
Cma10g00622 1053 ProSitePatterns Serine proteases, subtilase family, serine active site. 421 431 IPR023828 -
Cma10g00622 1053 Gene3D Peptidase S8/S53 domain 194 485 IPR036852 GO:0004252|GO:0006508
Cma10g00622 1053 ProSiteProfiles Serine proteases, subtilase domain profile. 193 487 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00622 Cma-Chr10:2862927 Cma02g00247 Cma-Chr2:1104197 8.29E-07 dispersed
Cma10g00622 Cma-Chr10:2862927 Cma06g00694 Cma-Chr6:3494530 2.58E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00622 K08653 - csv:101222509 1923.67