Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00634 ATGGGTGAAGTAGGGAATCGGGAGACGGATAATTTACCCCCGCCAAATGCTCAAACTAATAGTGCGGAAGTCGTTTCATCTGATGTTCCTGCTAAGAAACTAGCTAGGCAGCTGAATTTTACGGGGCTTGGTGGTGCAGTCTTGCCAGACCACCCTCATTTTCATTCTCAGCCTCGGTCTCAATCAGACTCACAGGGCCTGATGGTGGTGCAGAGTCAGTCGCAGCCAAAGTCCCCACAACATTTGATGGTTTCGCCCATTGGAACACAAGCGCCTCATCCTGTGAGAAAGCCAGATTCTCCGAAGTCAAGATCGAGGTCTAATGTTGAAACAAAAGATGCTACTCCAAAGAAACAAAAACAGTGCAACTGCAAACACTCACGCTGCTTAAAGCTGTATTGCGAGTGCTTTGCATCTGGAATATACTGTGATGGTTGCAATTGCACAAATTGCTATAACAATGTGGAGAATGAAGCTTTCAGGAGAGAAGCAGTTGAAACTACTTTAGAACGTAATCCAAATGCATTCCGACCAAAAATTGCTAGCAGCCCACATGGAACACGAGAGATCAGGGATGAGGTTGGAGAGGTGGTAATGCTGGGAAAGCACAACAAAGGATGCCATTGCAAGAAATCAGGTTGCTTAAAGAAGTATTGTGAGTGTTTTCAGGCCAATATTCTCTGCTCTGAAAACTGTAAGTGCATGGACTGCAAGAATTTTGAAGGCAGTGAAGAGAGACAAGCTCTTTTCCATGGTGATCATGTCAGCAACATGGCTTATATTCAGCAGGCAGCAAATGCGGCAATAACTGGAGCTATTGGATCGTCTGGTTATGCTTACCTTCCCACTTCAAAGAAAAGAAAAGTCCCAGAGCTATGCTTTGCCTCTGTAGGGAAGGATCCCCCCCTCAACAGCATTCCAGAATTTCATCAGGTGAATAATTTAATGTCTTCAGGCACGTCTACATCATCTCCCCTCCCAGTTGCTCATGCTGGCAGCCCTGCAGCACCGGGGACTTCAAAATTTTCATTCAGGTCCCTATTAGCTGACCTCGTCCAGCCACACGACTTGAAGGAGCTTTGCTCAGTTTTAGTGGTGTTGTCAAGTGAAGTTGCCAAGAACATAGCAGAAAAAAGAATTGCTGAGGAGCAGATAAATGATCCACTACAGATTTCCCGTGTTTCATCAGCTGGAGATGGTTCACAGCATGAGAAGGCAGATGAGAAAGCTGTCGATGGTGGGTGTGGAAGTTTAAACCAAAGTGAGAGGCTTGTACATGATAATCATTCAGATAGTTCAGATATGACAAAATCAAGGCCAATGTCCCCAGGAACCTTAGCTTTAATGTGTGACGAACGAGATACAATGTTCATGGGAGCTGCTCCAGCTGATCGTTTGGCAGGGCATGGTTGCAACACATCATCGCATGTGCCTGATAAGTCTGTGTCAGAAGTCTACATAGAGCAGGAACGGATCGTGTTGACAAAGTTTCGAGATTGTCTTAATAAACTCATCACTCTTGGAGAGATTAAGGAAACAAACTTCACGTCTAGAAGCGAAGAGAAGAACGAAAATCAAAGCAACAATTTCACAACAAATAGCAGATGTGAACAGGGAACTATCGACAATGGGGTCATAAAAAATGTCGCTCTCTCGGCACCCATAATACCGCAAGTCGGTAACTCAGCTGGTCGCCCTAGTAATGATCTGCTACCCAGAATTCTACCCCTTCCTGAAAATGGGAAGAGTAAACCAGAAGTTGACAGAGAAGTGTAG 1776 45.05 MGEVGNRETDNLPPPNAQTNSAEVVSSDVPAKKLARQLNFTGLGGAVLPDHPHFHSQPRSQSDSQGLMVVQSQSQPKSPQHLMVSPIGTQAPHPVRKPDSPKSRSRSNVETKDATPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCTNCYNNVENEAFRREAVETTLERNPNAFRPKIASSPHGTREIRDEVGEVVMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHVSNMAYIQQAANAAITGAIGSSGYAYLPTSKKRKVPELCFASVGKDPPLNSIPEFHQVNNLMSSGTSTSSPLPVAHAGSPAAPGTSKFSFRSLLADLVQPHDLKELCSVLVVLSSEVAKNIAEKRIAEEQINDPLQISRVSSAGDGSQHEKADEKAVDGGCGSLNQSERLVHDNHSDSSDMTKSRPMSPGTLALMCDERDTMFMGAAPADRLAGHGCNTSSHVPDKSVSEVYIEQERIVLTKFRDCLNKLITLGEIKETNFTSRSEEKNENQSNNFTTNSRCEQGTIDNGVIKNVALSAPIIPQVGNSAGRPSNDLLPRILPLPENGKSKPEVDREV 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2900631 2906435 - CmaCh10G006340.1 Cma10g00634 301950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00634 591 MobiDBLite consensus disorder prediction 520 537 - -
Cma10g00634 591 MobiDBLite consensus disorder prediction 1 30 - -
Cma10g00634 591 MobiDBLite consensus disorder prediction 391 442 - -
Cma10g00634 591 MobiDBLite consensus disorder prediction 58 85 - -
Cma10g00634 591 SMART CXC_2 117 157 IPR033467 -
Cma10g00634 591 SMART CXC_2 202 243 IPR033467 -
Cma10g00634 591 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 205 239 IPR005172 -
Cma10g00634 591 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 119 154 IPR005172 -
Cma10g00634 591 MobiDBLite consensus disorder prediction 97 117 - -
Cma10g00634 591 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 24 91 - -
Cma10g00634 591 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 93 540 - -
Cma10g00634 591 MobiDBLite consensus disorder prediction 516 537 - -
Cma10g00634 591 MobiDBLite consensus disorder prediction 11 26 - -
Cma10g00634 591 PANTHER TESMIN/TSO1-RELATED 24 91 IPR028307 -
Cma10g00634 591 PANTHER TESMIN/TSO1-RELATED 93 540 IPR028307 -
Cma10g00634 591 MobiDBLite consensus disorder prediction 43 117 - -
Cma10g00634 591 MobiDBLite consensus disorder prediction 558 591 - -
Cma10g00634 591 ProSiteProfiles CRC domain profile. 118 242 IPR005172 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00634 Cma12g01257 CCT
Cma05g01345 Cma10g00634 CCT
Cma10g00634 Cma12g01257 ECH
Cma05g01345 Cma10g00634 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01135 Cma-Chr8:6999599 Cma10g00634 Cma-Chr10:2900631 1.70E-35 dispersed
Cma10g00634 Cma-Chr10:2900631 Cma17g00222 Cma-Chr17:1133318 2.78E-33 dispersed
Cma10g00634 Cma-Chr10:2900631 Cma11g00619 Cma-Chr11:2966019 0 wgd
Cma10g00634 Cma-Chr10:2900631 Cma12g01257 Cma-Chr12:9804970 0 wgd
Cma10g00634 Cma-Chr10:2900631 Cma05g01345 Cma-Chr5:10160668 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35730 PF03638 TCR 3.10E-12 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00634 - - csv:101222405 917.916