Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma10g00635 | ATGGGTTCCAGGGGTAAAGACTCTACGACACACCATCAGCCGTTATTGAGCAGTCTTGTTGTCCGGCCTTCAAATAGTGACGGGGGTGGTGGCGGAGTCTGTGGAACCAGTGGCGGCCGTGTTGGTCGTGGAAGCGATTATGAGGCGGGTGAGGTTCCCCGTGACCCTCCACAATATTCTCGATTGGATCGATATTCAGATGATTTGGATTGGGCTATTGGTGGACATCCTTTCTCATTGCCAGGACTTCGGTGCACTGAGTTTTTGCTTCTTCAAGACATGGTTTTGGGCGCATTGCTGGGATATAGAATGCATGCAGGTTCAGTTTCTCCCACACGTCGTCGGGATGATCATAGATATATTTCTGATTTTGATCATTCTAGTGGTCTCACACGGGGCCGTGAATTTGGTGGTGGGAGGGATCTTGGTAGGTATCGAGATACTTCGCCTCATTACAGTCGAAGAGTAAGTGGTGGCAGGCCATTTGGGAGAGGTTTTGATGGCCCTGGACATGCTCCTGGGCCATTTAGAGGGGAACGTAGTAAAAATAATCCAAATGTGCGTCCTAGGGATGGGGATTGGTATTGCTCAGATCCTTTATGTGACAACTTAAACTTTGCAAGACGAGAATTTTGTAACAACTGCAACAGACCCCGAACTGGAGCTGGTGGAAGTCCTCGAAGAGGAGGCTATGTTGGCCCACCATCCCTGCATTCTCCTCCTAGACGCTTTGCTGCCCACCCTATTGAACGTTCTCCTGGCAGGACTCTTAATGAATATAGGTCACCTCCCCGTGGTTGGGCCAGGGATGGTCCTAGGGAGATTGCAGCTGGTGGTCTGGCACCTCCGAGGTATGAAAGCAGGTATTCCGATCATCACCTGCGGAGAGATAGGGTTGATTATGTAGAAGACAGCTTCAGAGGAAGATCCAAGTTTGATAGGCTACCTCCTTCAGATTGGTCCCTTAGAGACAATGGAAGGGATGACTTCATCAACGAGAGGAAGGGATTTGAAAGAAGGCCACTATCACCAAAGGGATTTGAAAGAAGGCCACTATCACCAAAGGGATTTGAAAGAAGGCCACTATCACCACCACAACTGTCGTTGCTTCCTCAGCGGGGGCGATGGGCACGCGACGTGAGAGAAAGGAGCCGTTCCCCAATCAGAGGTCCAGTCAGATCACCATTGAGAGTCCCTCTTCGGTCTCCATTAAGTGGTGGCCTTCCACCAAAAGACTATCGTAGAGATGTTTATGTTGAAAGGGAGCGTGACGATAGGCGTGGCCTAGGACGAGATCGCGATGGAGGTCCATTTTAG | 1317 | 50.27 | MGSRGKDSTTHHQPLLSSLVVRPSNSDGGGGGVCGTSGGRVGRGSDYEAGEVPRDPPQYSRLDRYSDDLDWAIGGHPFSLPGLRCTEFLLLQDMVLGALLGYRMHAGSVSPTRRRDDHRYISDFDHSSGLTRGREFGGGRDLGRYRDTSPHYSRRVSGGRPFGRGFDGPGHAPGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPRTGAGGSPRRGGYVGPPSLHSPPRRFAAHPIERSPGRTLNEYRSPPRGWARDGPREIAAGGLAPPRYESRYSDHHLRRDRVDYVEDSFRGRSKFDRLPPSDWSLRDNGRDDFINERKGFERRPLSPKGFERRPLSPKGFERRPLSPPQLSLLPQRGRWARDVRERSRSPIRGPVRSPLRVPLRSPLSGGLPPKDYRRDVYVERERDDRRGLGRDRDGGPF | 438 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 2907510 | 2912627 | - | CmaCh10G006350.1 | Cma10g00635 | 301951 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma10g00635 | 438 | MobiDBLite | consensus disorder prediction | 216 | 288 | - | - | |
| Cma10g00635 | 438 | MobiDBLite | consensus disorder prediction | 413 | 438 | - | - | |
| Cma10g00635 | 438 | Gene3D | - | 180 | 222 | - | - | |
| Cma10g00635 | 438 | PANTHER | RNA BINDING PROTEIN | 99 | 423 | IPR034870 | GO:0003723|GO:0006355 | |
| Cma10g00635 | 438 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 190 | 221 | IPR001876 | - | |
| Cma10g00635 | 438 | MobiDBLite | consensus disorder prediction | 332 | 438 | - | - | |
| Cma10g00635 | 438 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Cma10g00635 | 438 | SMART | zf_4 | 192 | 218 | IPR001876 | - | |
| Cma10g00635 | 438 | PANTHER | GH13594P-RELATED | 99 | 423 | - | - | |
| Cma10g00635 | 438 | MobiDBLite | consensus disorder prediction | 332 | 356 | - | - | |
| Cma10g00635 | 438 | ProSitePatterns | Zinc finger RanBP2-type signature. | 194 | 215 | IPR001876 | - | |
| Cma10g00635 | 438 | MobiDBLite | consensus disorder prediction | 135 | 189 | - | - | |
| Cma10g00635 | 438 | MobiDBLite | consensus disorder prediction | 137 | 153 | - | - | |
| Cma10g00635 | 438 | SUPERFAMILY | Ran binding protein zinc finger-like | 182 | 221 | IPR036443 | - | |
| Cma10g00635 | 438 | MobiDBLite | consensus disorder prediction | 1 | 61 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma10g00635 | Cma11g00619 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma01g00700 | Cma-Chr1:3664921 | Cma10g00635 | Cma-Chr10:2907510 | 2.46E-07 | dispersed | |
| Cma10g00635 | Cma-Chr10:2907510 | Cma11g00619 | Cma-Chr11:2966019 | 0 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma10g00635 | - | - | cmos:111461847 | 741.11 |