Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma10g00637 | ATGAACATAGGGGGATTGCAAAGCTCAGTTATGCAACAGATGATGATGGGTTCAGAAAACCCTAATTGGTGGAATTCAAATAATCACTCTTCACTTCCTTTTCCTTCTAATTCCTTCTATCACCTTCAACACCACTTTCCAGATTCTTGGAGCCAACTTCTCTTGGGCGATGTGGTTGGTGAAGAGGATCAAAAGGGTTGTATGCCAATGTTTCAACAAGCCAAGAAGTTGGAGGATTGGGATGAAGAGATTTTGAATGGCAAAGTTGATGTCAAGAAACACCACTCACCTCATTCCATCAACTATGGCTACGGACAAGGCGGTGTCGGTGTCGGTGTCGGTGTCGTAGGCGACGATTATCAATTGGCTCCTAAACAAAACTGGTCCCCTATGATACCAGCTTCTTCTCCTCACTCATGTATCCCAAGTTTCAGTAGTAATATGTTGGATTTTTCAAATAATAACAACAACCATAACAACTCTCCAACTCATCATTCCCGCCCTACACATCCCCAACCAGATCGCTCTTCCGAGTGTAACAGCAATCCAAGGGGTGGGGCAATGAAGAAATCCAGGGTTGAATCCTCTTCAAACCAAACCAGTTTCAAGGTTAGGAAGGAAAAATTGGGTGACAGAATTACAGCTCTCCACCAGCTTGTTTCTCCATTTGGGAAGACTGACACAGCTTCAGTTTTGTTAGAAGCTATTGGGTACATCAGATTCCTTCATACTCAAATTGAGGCCCTCAGTTTGCCTTACTTAGGCAATGCTTCGGGAAGTACGAGGCAGCAAGAACAACATTCTGTTCCAGGGGAAAGAAATTGTATGTTTCCTGAGGACCCTGGCCAGCTCGTGAACGACAACGGGTTGAACAAGAATGGAGACGAGGAGGGAGAGAAGGATCTGAGGGGTAGAGGGTTATGTCTGGTTCCAGTATCCTGCACCCTGCAAGTTGGGAGTGAGAATGGAGCAGATTATTGGGCTCCGACGTTCGGCGGTGGTGGCGGTTTCCGGTAG | 1017 | 46.02 | MNIGGLQSSVMQQMMMGSENPNWWNSNNHSSLPFPSNSFYHLQHHFPDSWSQLLLGDVVGEEDQKGCMPMFQQAKKLEDWDEEILNGKVDVKKHHSPHSINYGYGQGGVGVGVGVVGDDYQLAPKQNWSPMIPASSPHSCIPSFSSNMLDFSNNNNNHNNSPTHHSRPTHPQPDRSSECNSNPRGGAMKKSRVESSSNQTSFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLHTQIEALSLPYLGNASGSTRQQEQHSVPGERNCMFPEDPGQLVNDNGLNKNGDEEGEKDLRGRGLCLVPVSCTLQVGSENGADYWAPTFGGGGGFR | 338 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 2917011 | 2919686 | - | CmaCh10G006370.1 | Cma10g00637 | 301953 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma10g00637 | 338 | MobiDBLite | consensus disorder prediction | 258 | 298 | - | - | |
| Cma10g00637 | 338 | Gene3D | - | 195 | 254 | IPR036638 | GO:0046983 | |
| Cma10g00637 | 338 | PANTHER | OS05G0228400 PROTEIN | 28 | 322 | - | - | |
| Cma10g00637 | 338 | CDD | bHLH_AtbHLH_like | 201 | 250 | IPR045239 | - | |
| Cma10g00637 | 338 | MobiDBLite | consensus disorder prediction | 151 | 184 | - | - | |
| Cma10g00637 | 338 | MobiDBLite | consensus disorder prediction | 151 | 205 | - | - | |
| Cma10g00637 | 338 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 28 | 322 | - | - | |
| Cma10g00637 | 338 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 203 | 253 | IPR036638 | GO:0046983 | |
| Cma10g00637 | 338 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 193 | 242 | IPR011598 | GO:0046983 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma10g00637 | Cma11g00623 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma10g00637 | Cma-Chr10:2917011 | Cma16g00839 | Cma-Chr16:4812754 | 8.77E-39 | dispersed | |
| Cma01g00104 | Cma-Chr1:479759 | Cma10g00637 | Cma-Chr10:2917011 | 1.00E-44 | wgd | |
| Cma10g00637 | Cma-Chr10:2917011 | Cma11g00623 | Cma-Chr11:2998384 | 1.01E-130 | wgd | |
| Cma10g00637 | Cma-Chr10:2917011 | Cma08g00715 | Cma-Chr8:4343801 | 1.30E-49 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma10g00637 | - | - | cmos:111461848 | 592.423 |