Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00654 ATGGGTTGCATTTTTTCGAGGGTTTGTATTGGCGAGGAAACTACTTCAAGATCTTCGAGAATCGCTGAAGCCCAAATTGCCAAGACCGCCGCTGAAATCGATACGATCTCTTCTTCGTCTTCTAATAGCCGAGAAGGCGGAATCGGTGACCAACGAAATCGATTGAATTCAAACAACAGAGATTCAGAAGTTGAAATCACGAGGCTGTCGAGAGTTTCTTCTCAGTTCTTGCCCGCCGAGGGGTCTCGAACCATCAAAGTTCCTTCTGGAAACTTCAAATTACAATATTCGTTTCTTTCGCAAAGAGGGTATTATCCCGATGCCCTTGATAAGGCAAATCAAGACAGTTTTTGCATCCACACCCCATTTGGGAACAGTCCAGATGACCATTTCTTTGGGGTTTTCGATGGGCATGGGGAATTTGGAACACAGTGCTCGCAGTTTGTTAAACGGAAGCTCTGTGAAAATTTACTTAGGAATAGTAGGTTCCACAGTGACGCGGTTGAAGCTTGTCATGCGGCTTATTTAACAACTAATTCACAGTTGCACGCAGATATCTTGGATGATAGCATGAGTGGTACTACGGCTATTACTGTTTTAGTTAGAGGTAGGACTATATATGTTGCTAATTCAGGTGATTCGAGAGCCGTTATAGCAGAGCGGAGAGGGAAGGAAGTCGTGGCTGTCGACCTCTCAATCGATCAAACTCCGTTCCGAACCGACGAAGTTGAACGTGTTAAGCTTTGTGGTGCTAGAGTTCTTACACTTGATCAGATTGAGGGGCTGAAGAACCCTGAGATTCAGTACTGGGGTACTGAAGAAGGAGATGATGGTGATCCTCCTAGGCTTTGGGTACCTAATGGGATGTACCCTGGTACTGCTTTCACAAGAAGTATAGGCGACTCGATTGCCGAGACTATTGGCGTTGTTGCTACGCCTGAAATTGTTGTTCTGGAGCTGACACCAGATCATCCTTTCTTTGTTGTTGCTAGTGATGGGGTATTTGAGTTTCTTTCGAGCCAAACCGTGGTCGACATGGTTTCTAAATATAAAGATCCCCGTGATGCTTGTGCTGCAATTGTGGCTGAGTCCTATAAACTTTGGCTTCAATTTGAGACTCGAACAGATGATATCACTGTTATCGTGGTGCATATCAATGGACTAACCAATACTGTTACTAGTGAATCGACAAGATCTGTTGGAGGTGGTATCGTTCCATCTGCTCTTCCTCAAGTCGTGGAGGTGACAGGATCAGAATCTCCTTCTACCTTTGGCTGGAATAGAAACAACCGTGCAAGGCAAGATTTGTCAAGGGCACGTCTCCGGGCTATCGAGAGTTCCCTAGAGAACGGGCAAGTCTGGGTGCCTCCATCTCCAGCTCATAGGAAGTCGTGGGAAGAAGAAGCACATATTGAACGAGCATTGCACGACCATTTCCTCTTCAGAAAACTAACTGATTCTCAGTGCCAAGTCTTACTAGATTGTATGCAAAGAGTTGATGTCATACCCGGGCAAATCGTAGTCGAACAAGGTGGTGAAGGTGACTGTTTTTATGTGGTTGGCAGTGGAGAATTTGAGGTCTTGGCAACCCAGGAAGAAAGCCATGGAGACGTTCCTCGAATTCTGCAACACTACACAGCTGAGAAGCTATCTTCCTTCGGGGAACTGGCTTTGATGTATAACAAACCACTTCAAGCCTCAGTACGTGCTGTTACAAGCGGGACGCTTTGGGCTTTGAAAAGAGAGGACTTTCGTGGCATTCTTATATCAGAATTTTCGAACTTGTCATCTTTGAAATCTCTTCGATCTGTCGACCTTTTGTCGAAGTTAACAATCTTGCAATTGAGTCGCATTGCAGATTGCCTTTCTGAAGTTACCTTCGCAGATGGGCAGCTGATTGTTGATGGGACGGAAGACGCCTCATGTGCACTGCACATTATTCAGAAGGGACGAGTGAGGATCACTTTCGATGCGGAGTTAATGAGCAGTTCAAATGTTTACAGCTTCAATTATGCCAGTCAAGAAGAGGACGATGCCGCACGGAGTGGTAACGAGATCGTAGCTATTAAGAAAGAGGGAAGTTATTTTGGTGAATGGGGACTTCTTGGTGAGCATGTGGGCTTCTTACAGGCAGTTGCTGTGGGAGATGTTGTGTGTTCTATTTTAACAAAGGAAAAGTTTGAATCAGTTGTTGGCCCTTTACCAAAGCTCTCTCAAGATGATCAAAAGGCGAAGGAACATTCTTCAGACACTCTCCATCACTCAGACAAAATTCTTGACATTTCAGCTATTCCGAAAGTCGAGCTCGCTGATCTGGAGTGGAAAACGTGTTTATATTCCACAGAATACAGTGAAATCGGTCTAGTTCGGTTAAGGAACACAGAAACTACGCTTAGTTTAAAAAGGTTTACAAGACAGAAGGTCAAAAGGCTGGGACTTGAAGCACAAGTTTCAAAGGAGAAAGATCTTATGAAGAGCATCAGTTCTTTAGCTTGTGTGCCGCAAATTCTCTGCACTTGTTTAGACCAATCACATGCTGGCATATTGCTAAAAACACGCCTTGCTTGTTCTTTGTCTTCGATACTTCAAGTCCCGCTCGATGAATCTTCTGCACGTTTCTTCGCAGCCTCTCTTGTTATGGCACTAGAAGATTTGCACAAGCTTGGTGTTCTCCACAGAGGAATCTCCCCTGATGTTCTAATGTTGAATCAAACCGGACACATACAGTTAGTAGACTTCAGATATGGGAAACGAACAACGGGCGAGAGAACGTATACTATTTGCGGGGCGGCCGACTTTTTAGCTCCCGAGATAGTTCAGGGCAATGGCCATGGTTTCGCTGCTGACTGGTGGGCCCTGGGAGTCTTAATCTATTTCATGCTGAAAGGTAAAATGCCATTCGGATCATGGCGACAAGGCGAGCTCGATACGTTTTCGAAGATTGCAAGAGGACAATTAAGTGTTCCCCAGATTTTCAGTCATGAAGCAATTGATCTCATCGTCAAGTTACTTGAAGTTGATGAGAAGAAAAGACTTGGAAACGAGAATCAAAACTCTGTTAGAAGTCATCCCTGGTTCGATGGCATTGATTGGAAGGGAATCCACGACGGTACCTTTCCCATTCCCGAGTCAATTACTTCTCGTGTCGCTCGATATTTGGAGAGCTACCCTGAAGATTACAGTGTTTCTTTAGTCAAACCAACTCGAGATCGTGATGAACAGGATGACCCCGAGTGGATCAACGACTGGTAG 3252 44.96 MGCIFSRVCIGEETTSRSSRIAEAQIAKTAAEIDTISSSSSNSREGGIGDQRNRLNSNNRDSEVEITRLSRVSSQFLPAEGSRTIKVPSGNFKLQYSFLSQRGYYPDALDKANQDSFCIHTPFGNSPDDHFFGVFDGHGEFGTQCSQFVKRKLCENLLRNSRFHSDAVEACHAAYLTTNSQLHADILDDSMSGTTAITVLVRGRTIYVANSGDSRAVIAERRGKEVVAVDLSIDQTPFRTDEVERVKLCGARVLTLDQIEGLKNPEIQYWGTEEGDDGDPPRLWVPNGMYPGTAFTRSIGDSIAETIGVVATPEIVVLELTPDHPFFVVASDGVFEFLSSQTVVDMVSKYKDPRDACAAIVAESYKLWLQFETRTDDITVIVVHINGLTNTVTSESTRSVGGGIVPSALPQVVEVTGSESPSTFGWNRNNRARQDLSRARLRAIESSLENGQVWVPPSPAHRKSWEEEAHIERALHDHFLFRKLTDSQCQVLLDCMQRVDVIPGQIVVEQGGEGDCFYVVGSGEFEVLATQEESHGDVPRILQHYTAEKLSSFGELALMYNKPLQASVRAVTSGTLWALKREDFRGILISEFSNLSSLKSLRSVDLLSKLTILQLSRIADCLSEVTFADGQLIVDGTEDASCALHIIQKGRVRITFDAELMSSSNVYSFNYASQEEDDAARSGNEIVAIKKEGSYFGEWGLLGEHVGFLQAVAVGDVVCSILTKEKFESVVGPLPKLSQDDQKAKEHSSDTLHHSDKILDISAIPKVELADLEWKTCLYSTEYSEIGLVRLRNTETTLSLKRFTRQKVKRLGLEAQVSKEKDLMKSISSLACVPQILCTCLDQSHAGILLKTRLACSLSSILQVPLDESSARFFAASLVMALEDLHKLGVLHRGISPDVLMLNQTGHIQLVDFRYGKRTTGERTYTICGAADFLAPEIVQGNGHGFAADWWALGVLIYFMLKGKMPFGSWRQGELDTFSKIARGQLSVPQIFSHEAIDLIVKLLEVDEKKRLGNENQNSVRSHPWFDGIDWKGIHDGTFPIPESITSRVARYLESYPEDYSVSLVKPTRDRDEQDDPEWINDW 1083
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2961143 2965966 + CmaCh10G006540.1 Cma10g00654 301970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00654 1083 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 28 1083 - -
Cma10g00654 1083 Pfam Cyclic nucleotide-binding domain 503 588 IPR000595 -
Cma10g00654 1083 Gene3D Jelly Rolls 449 588 IPR014710 -
Cma10g00654 1083 Gene3D Jelly Rolls 594 751 IPR014710 -
Cma10g00654 1083 ProSiteProfiles Protein kinase domain profile. 772 1026 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00654 1083 Pfam Protein kinase domain 783 1026 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00654 1083 SUPERFAMILY cAMP-binding domain-like 461 589 IPR018490 -
Cma10g00654 1083 CDD CAP_ED 480 588 IPR000595 -
Cma10g00654 1083 CDD CAP_ED 606 739 IPR000595 -
Cma10g00654 1083 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 28 1083 - -
Cma10g00654 1083 ProSiteProfiles cAMP/cGMP binding motif profile. 606 733 IPR000595 -
Cma10g00654 1083 SMART serkin_6 779 1026 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00654 1083 SMART cnmp_10 480 603 IPR000595 -
Cma10g00654 1083 SMART cnmp_10 606 746 IPR000595 -
Cma10g00654 1083 CDD PP2Cc 111 385 IPR001932 -
Cma10g00654 1083 ProSiteProfiles PPM-type phosphatase domain profile. 95 385 IPR001932 -
Cma10g00654 1083 SMART PP2C_4 91 383 IPR001932 -
Cma10g00654 1083 MobiDBLite consensus disorder prediction 35 62 - -
Cma10g00654 1083 Gene3D Phosphorylase Kinase; domain 1 771 856 - -
Cma10g00654 1083 MobiDBLite consensus disorder prediction 35 55 - -
Cma10g00654 1083 SUPERFAMILY PP2C-like 83 387 IPR036457 -
Cma10g00654 1083 Pfam Protein phosphatase 2C 122 363 IPR001932 -
Cma10g00654 1083 SUPERFAMILY cAMP-binding domain-like 598 737 IPR018490 -
Cma10g00654 1083 ProSitePatterns PPM-type phosphatase domain signature. 131 139 IPR000222 GO:0043169
Cma10g00654 1083 Gene3D - 88 386 IPR036457 -
Cma10g00654 1083 ProSiteProfiles cAMP/cGMP binding motif profile. 480 588 IPR000595 -
Cma10g00654 1083 PRINTS cAMP-dependent protein kinase signature 501 515 - -
Cma10g00654 1083 PRINTS cAMP-dependent protein kinase signature 516 530 - -
Cma10g00654 1083 PRINTS cAMP-dependent protein kinase signature 551 560 - -
Cma10g00654 1083 PRINTS cAMP-dependent protein kinase signature 727 739 - -
Cma10g00654 1083 Gene3D Transferase(Phosphotransferase) domain 1 857 1038 - -
Cma10g00654 1083 SUPERFAMILY Protein kinase-like (PK-like) 759 1059 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00654 Cma11g00630 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01186 Cma-Chr8:7303681 Cma10g00654 Cma-Chr10:2961143 1.21E-141 dispersed
Cma10g00654 Cma-Chr10:2961143 Cma17g00286 Cma-Chr17:1524974 1.99E-141 dispersed
Cma10g00654 Cma-Chr10:2961143 Cma11g00630 Cma-Chr11:3041094 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68846 PF00069 Pkinase 1.20E-33 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00654 - - cpep:111780232 2076.98