Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma10g00654 | ATGGGTTGCATTTTTTCGAGGGTTTGTATTGGCGAGGAAACTACTTCAAGATCTTCGAGAATCGCTGAAGCCCAAATTGCCAAGACCGCCGCTGAAATCGATACGATCTCTTCTTCGTCTTCTAATAGCCGAGAAGGCGGAATCGGTGACCAACGAAATCGATTGAATTCAAACAACAGAGATTCAGAAGTTGAAATCACGAGGCTGTCGAGAGTTTCTTCTCAGTTCTTGCCCGCCGAGGGGTCTCGAACCATCAAAGTTCCTTCTGGAAACTTCAAATTACAATATTCGTTTCTTTCGCAAAGAGGGTATTATCCCGATGCCCTTGATAAGGCAAATCAAGACAGTTTTTGCATCCACACCCCATTTGGGAACAGTCCAGATGACCATTTCTTTGGGGTTTTCGATGGGCATGGGGAATTTGGAACACAGTGCTCGCAGTTTGTTAAACGGAAGCTCTGTGAAAATTTACTTAGGAATAGTAGGTTCCACAGTGACGCGGTTGAAGCTTGTCATGCGGCTTATTTAACAACTAATTCACAGTTGCACGCAGATATCTTGGATGATAGCATGAGTGGTACTACGGCTATTACTGTTTTAGTTAGAGGTAGGACTATATATGTTGCTAATTCAGGTGATTCGAGAGCCGTTATAGCAGAGCGGAGAGGGAAGGAAGTCGTGGCTGTCGACCTCTCAATCGATCAAACTCCGTTCCGAACCGACGAAGTTGAACGTGTTAAGCTTTGTGGTGCTAGAGTTCTTACACTTGATCAGATTGAGGGGCTGAAGAACCCTGAGATTCAGTACTGGGGTACTGAAGAAGGAGATGATGGTGATCCTCCTAGGCTTTGGGTACCTAATGGGATGTACCCTGGTACTGCTTTCACAAGAAGTATAGGCGACTCGATTGCCGAGACTATTGGCGTTGTTGCTACGCCTGAAATTGTTGTTCTGGAGCTGACACCAGATCATCCTTTCTTTGTTGTTGCTAGTGATGGGGTATTTGAGTTTCTTTCGAGCCAAACCGTGGTCGACATGGTTTCTAAATATAAAGATCCCCGTGATGCTTGTGCTGCAATTGTGGCTGAGTCCTATAAACTTTGGCTTCAATTTGAGACTCGAACAGATGATATCACTGTTATCGTGGTGCATATCAATGGACTAACCAATACTGTTACTAGTGAATCGACAAGATCTGTTGGAGGTGGTATCGTTCCATCTGCTCTTCCTCAAGTCGTGGAGGTGACAGGATCAGAATCTCCTTCTACCTTTGGCTGGAATAGAAACAACCGTGCAAGGCAAGATTTGTCAAGGGCACGTCTCCGGGCTATCGAGAGTTCCCTAGAGAACGGGCAAGTCTGGGTGCCTCCATCTCCAGCTCATAGGAAGTCGTGGGAAGAAGAAGCACATATTGAACGAGCATTGCACGACCATTTCCTCTTCAGAAAACTAACTGATTCTCAGTGCCAAGTCTTACTAGATTGTATGCAAAGAGTTGATGTCATACCCGGGCAAATCGTAGTCGAACAAGGTGGTGAAGGTGACTGTTTTTATGTGGTTGGCAGTGGAGAATTTGAGGTCTTGGCAACCCAGGAAGAAAGCCATGGAGACGTTCCTCGAATTCTGCAACACTACACAGCTGAGAAGCTATCTTCCTTCGGGGAACTGGCTTTGATGTATAACAAACCACTTCAAGCCTCAGTACGTGCTGTTACAAGCGGGACGCTTTGGGCTTTGAAAAGAGAGGACTTTCGTGGCATTCTTATATCAGAATTTTCGAACTTGTCATCTTTGAAATCTCTTCGATCTGTCGACCTTTTGTCGAAGTTAACAATCTTGCAATTGAGTCGCATTGCAGATTGCCTTTCTGAAGTTACCTTCGCAGATGGGCAGCTGATTGTTGATGGGACGGAAGACGCCTCATGTGCACTGCACATTATTCAGAAGGGACGAGTGAGGATCACTTTCGATGCGGAGTTAATGAGCAGTTCAAATGTTTACAGCTTCAATTATGCCAGTCAAGAAGAGGACGATGCCGCACGGAGTGGTAACGAGATCGTAGCTATTAAGAAAGAGGGAAGTTATTTTGGTGAATGGGGACTTCTTGGTGAGCATGTGGGCTTCTTACAGGCAGTTGCTGTGGGAGATGTTGTGTGTTCTATTTTAACAAAGGAAAAGTTTGAATCAGTTGTTGGCCCTTTACCAAAGCTCTCTCAAGATGATCAAAAGGCGAAGGAACATTCTTCAGACACTCTCCATCACTCAGACAAAATTCTTGACATTTCAGCTATTCCGAAAGTCGAGCTCGCTGATCTGGAGTGGAAAACGTGTTTATATTCCACAGAATACAGTGAAATCGGTCTAGTTCGGTTAAGGAACACAGAAACTACGCTTAGTTTAAAAAGGTTTACAAGACAGAAGGTCAAAAGGCTGGGACTTGAAGCACAAGTTTCAAAGGAGAAAGATCTTATGAAGAGCATCAGTTCTTTAGCTTGTGTGCCGCAAATTCTCTGCACTTGTTTAGACCAATCACATGCTGGCATATTGCTAAAAACACGCCTTGCTTGTTCTTTGTCTTCGATACTTCAAGTCCCGCTCGATGAATCTTCTGCACGTTTCTTCGCAGCCTCTCTTGTTATGGCACTAGAAGATTTGCACAAGCTTGGTGTTCTCCACAGAGGAATCTCCCCTGATGTTCTAATGTTGAATCAAACCGGACACATACAGTTAGTAGACTTCAGATATGGGAAACGAACAACGGGCGAGAGAACGTATACTATTTGCGGGGCGGCCGACTTTTTAGCTCCCGAGATAGTTCAGGGCAATGGCCATGGTTTCGCTGCTGACTGGTGGGCCCTGGGAGTCTTAATCTATTTCATGCTGAAAGGTAAAATGCCATTCGGATCATGGCGACAAGGCGAGCTCGATACGTTTTCGAAGATTGCAAGAGGACAATTAAGTGTTCCCCAGATTTTCAGTCATGAAGCAATTGATCTCATCGTCAAGTTACTTGAAGTTGATGAGAAGAAAAGACTTGGAAACGAGAATCAAAACTCTGTTAGAAGTCATCCCTGGTTCGATGGCATTGATTGGAAGGGAATCCACGACGGTACCTTTCCCATTCCCGAGTCAATTACTTCTCGTGTCGCTCGATATTTGGAGAGCTACCCTGAAGATTACAGTGTTTCTTTAGTCAAACCAACTCGAGATCGTGATGAACAGGATGACCCCGAGTGGATCAACGACTGGTAG | 3252 | 44.96 | MGCIFSRVCIGEETTSRSSRIAEAQIAKTAAEIDTISSSSSNSREGGIGDQRNRLNSNNRDSEVEITRLSRVSSQFLPAEGSRTIKVPSGNFKLQYSFLSQRGYYPDALDKANQDSFCIHTPFGNSPDDHFFGVFDGHGEFGTQCSQFVKRKLCENLLRNSRFHSDAVEACHAAYLTTNSQLHADILDDSMSGTTAITVLVRGRTIYVANSGDSRAVIAERRGKEVVAVDLSIDQTPFRTDEVERVKLCGARVLTLDQIEGLKNPEIQYWGTEEGDDGDPPRLWVPNGMYPGTAFTRSIGDSIAETIGVVATPEIVVLELTPDHPFFVVASDGVFEFLSSQTVVDMVSKYKDPRDACAAIVAESYKLWLQFETRTDDITVIVVHINGLTNTVTSESTRSVGGGIVPSALPQVVEVTGSESPSTFGWNRNNRARQDLSRARLRAIESSLENGQVWVPPSPAHRKSWEEEAHIERALHDHFLFRKLTDSQCQVLLDCMQRVDVIPGQIVVEQGGEGDCFYVVGSGEFEVLATQEESHGDVPRILQHYTAEKLSSFGELALMYNKPLQASVRAVTSGTLWALKREDFRGILISEFSNLSSLKSLRSVDLLSKLTILQLSRIADCLSEVTFADGQLIVDGTEDASCALHIIQKGRVRITFDAELMSSSNVYSFNYASQEEDDAARSGNEIVAIKKEGSYFGEWGLLGEHVGFLQAVAVGDVVCSILTKEKFESVVGPLPKLSQDDQKAKEHSSDTLHHSDKILDISAIPKVELADLEWKTCLYSTEYSEIGLVRLRNTETTLSLKRFTRQKVKRLGLEAQVSKEKDLMKSISSLACVPQILCTCLDQSHAGILLKTRLACSLSSILQVPLDESSARFFAASLVMALEDLHKLGVLHRGISPDVLMLNQTGHIQLVDFRYGKRTTGERTYTICGAADFLAPEIVQGNGHGFAADWWALGVLIYFMLKGKMPFGSWRQGELDTFSKIARGQLSVPQIFSHEAIDLIVKLLEVDEKKRLGNENQNSVRSHPWFDGIDWKGIHDGTFPIPESITSRVARYLESYPEDYSVSLVKPTRDRDEQDDPEWINDW | 1083 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2961143 | 2965966 | + | CmaCh10G006540.1 | Cma10g00654 | 301970 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma10g00654 | 1083 | PANTHER | PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN | 28 | 1083 | - | - | |
Cma10g00654 | 1083 | Pfam | Cyclic nucleotide-binding domain | 503 | 588 | IPR000595 | - | |
Cma10g00654 | 1083 | Gene3D | Jelly Rolls | 449 | 588 | IPR014710 | - | |
Cma10g00654 | 1083 | Gene3D | Jelly Rolls | 594 | 751 | IPR014710 | - | |
Cma10g00654 | 1083 | ProSiteProfiles | Protein kinase domain profile. | 772 | 1026 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma10g00654 | 1083 | Pfam | Protein kinase domain | 783 | 1026 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma10g00654 | 1083 | SUPERFAMILY | cAMP-binding domain-like | 461 | 589 | IPR018490 | - | |
Cma10g00654 | 1083 | CDD | CAP_ED | 480 | 588 | IPR000595 | - | |
Cma10g00654 | 1083 | CDD | CAP_ED | 606 | 739 | IPR000595 | - | |
Cma10g00654 | 1083 | PANTHER | CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE | 28 | 1083 | - | - | |
Cma10g00654 | 1083 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 606 | 733 | IPR000595 | - | |
Cma10g00654 | 1083 | SMART | serkin_6 | 779 | 1026 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma10g00654 | 1083 | SMART | cnmp_10 | 480 | 603 | IPR000595 | - | |
Cma10g00654 | 1083 | SMART | cnmp_10 | 606 | 746 | IPR000595 | - | |
Cma10g00654 | 1083 | CDD | PP2Cc | 111 | 385 | IPR001932 | - | |
Cma10g00654 | 1083 | ProSiteProfiles | PPM-type phosphatase domain profile. | 95 | 385 | IPR001932 | - | |
Cma10g00654 | 1083 | SMART | PP2C_4 | 91 | 383 | IPR001932 | - | |
Cma10g00654 | 1083 | MobiDBLite | consensus disorder prediction | 35 | 62 | - | - | |
Cma10g00654 | 1083 | Gene3D | Phosphorylase Kinase; domain 1 | 771 | 856 | - | - | |
Cma10g00654 | 1083 | MobiDBLite | consensus disorder prediction | 35 | 55 | - | - | |
Cma10g00654 | 1083 | SUPERFAMILY | PP2C-like | 83 | 387 | IPR036457 | - | |
Cma10g00654 | 1083 | Pfam | Protein phosphatase 2C | 122 | 363 | IPR001932 | - | |
Cma10g00654 | 1083 | SUPERFAMILY | cAMP-binding domain-like | 598 | 737 | IPR018490 | - | |
Cma10g00654 | 1083 | ProSitePatterns | PPM-type phosphatase domain signature. | 131 | 139 | IPR000222 | GO:0043169 | |
Cma10g00654 | 1083 | Gene3D | - | 88 | 386 | IPR036457 | - | |
Cma10g00654 | 1083 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 480 | 588 | IPR000595 | - | |
Cma10g00654 | 1083 | PRINTS | cAMP-dependent protein kinase signature | 501 | 515 | - | - | |
Cma10g00654 | 1083 | PRINTS | cAMP-dependent protein kinase signature | 516 | 530 | - | - | |
Cma10g00654 | 1083 | PRINTS | cAMP-dependent protein kinase signature | 551 | 560 | - | - | |
Cma10g00654 | 1083 | PRINTS | cAMP-dependent protein kinase signature | 727 | 739 | - | - | |
Cma10g00654 | 1083 | Gene3D | Transferase(Phosphotransferase) domain 1 | 857 | 1038 | - | - | |
Cma10g00654 | 1083 | SUPERFAMILY | Protein kinase-like (PK-like) | 759 | 1059 | IPR011009 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma10g00654 | Cma11g00630 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma08g01186 | Cma-Chr8:7303681 | Cma10g00654 | Cma-Chr10:2961143 | 1.21E-141 | dispersed | |
Cma10g00654 | Cma-Chr10:2961143 | Cma17g00286 | Cma-Chr17:1524974 | 1.99E-141 | dispersed | |
Cma10g00654 | Cma-Chr10:2961143 | Cma11g00630 | Cma-Chr11:3041094 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68846 | PF00069 | Pkinase | 1.20E-33 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma10g00654 | - | - | cpep:111780232 | 2076.98 |