Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma10g00659 | ATGCCCCTGCTTATTGAGAATGACTCTACAACTTGTAGCTTCTCCTCGCCGTCGCCGTCGCCGTCTTCGTCGGGGAGTTTATCCACGGTTCCATTGAGGGAGAGCGATCAGTCAGGGAAACGAGCCAAACGGCCCAGAGAAAACAGCAACAGCAAACACCCACTCTTCCGTGGGGTCCGAATGAGGGCATGGGGGAAATGGGTGTCCGAGATTCGTGAGCCTCGAAAGAAGAGTCGGATCTGGCTTGGCACTTTCTCTACTCCTGAAATGGCCGCACGTGCCCACGACGTTGCCGCTCTCACCATTAAAGGAAACTCCGCCATTCTCAACTTCCCTGAACTCGCCGATCAATTCCCCCGCCCCGCTTCCAACTCCCCTCGCGACGTTCAAGCCGCCGCCGCCAAAGCCGCCTCCATGGAAATCCCAACTCCCCCACCTTCATCATCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTATGTCCATCGACGCCGGAGGAACTGAGTGAAATAGTGGAGCTCCCGAGTTTAGGAACGAGTTACGAAACGGCCGAGTTGGGAAACGAATTCGTATTCGTCGACTCAGTGGAAGGTTGGCTGTATTCATACCCATGGTATCAAAGAGTGAATAACAATGCAGATGAAGAACAGAGCCATGGCTTCTTCAGAGACCAGATTTCAACAGACTCCATAACTCCTCCATCTTCAACCTTCGAAGCTTTCTTATGGCAATATTAA | 753 | 53.39 | MPLLIENDSTTCSFSSPSPSPSSSGSLSTVPLRESDQSGKRAKRPRENSNSKHPLFRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALTIKGNSAILNFPELADQFPRPASNSPRDVQAAAAKAASMEIPTPPPSSSSSSSSSSSSSSSSSSLCPSTPEELSEIVELPSLGTSYETAELGNEFVFVDSVEGWLYSYPWYQRVNNNADEEQSHGFFRDQISTDSITPPSSTFEAFLWQY | 250 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2980345 | 2981097 | + | CmaCh10G006590.1 | Cma10g00659 | 301975 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma10g00659 | 250 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
Cma10g00659 | 250 | PRINTS | Ethylene responsive element binding protein signature | 56 | 67 | IPR001471 | GO:0003700|GO:0006355 | |
Cma10g00659 | 250 | PRINTS | Ethylene responsive element binding protein signature | 78 | 94 | IPR001471 | GO:0003700|GO:0006355 | |
Cma10g00659 | 250 | Pfam | AP2 domain | 54 | 104 | IPR001471 | GO:0003700|GO:0006355 | |
Cma10g00659 | 250 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 17 | 249 | - | - | |
Cma10g00659 | 250 | ProSiteProfiles | AP2/ERF domain profile. | 55 | 112 | IPR001471 | GO:0003700|GO:0006355 | |
Cma10g00659 | 250 | MobiDBLite | consensus disorder prediction | 1 | 55 | - | - | |
Cma10g00659 | 250 | SUPERFAMILY | DNA-binding domain | 55 | 113 | IPR016177 | GO:0003677 | |
Cma10g00659 | 250 | MobiDBLite | consensus disorder prediction | 119 | 170 | - | - | |
Cma10g00659 | 250 | MobiDBLite | consensus disorder prediction | 142 | 170 | - | - | |
Cma10g00659 | 250 | Gene3D | AP2/ERF domain | 55 | 113 | IPR036955 | GO:0003700|GO:0006355 | |
Cma10g00659 | 250 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE | 17 | 249 | - | - | |
Cma10g00659 | 250 | MobiDBLite | consensus disorder prediction | 36 | 53 | - | - | |
Cma10g00659 | 250 | SMART | rav1_2 | 55 | 118 | IPR001471 | GO:0003700|GO:0006355 | |
Cma10g00659 | 250 | CDD | AP2 | 54 | 114 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma09g00635 | Cma-Chr9:3002095 | Cma10g00659 | Cma-Chr10:2980345 | 1.33E-59 | dispersed | |
Cma10g00659 | Cma-Chr10:2980345 | Cma12g00253 | Cma-Chr12:1285060 | 9.63E-58 | dispersed | |
Cma01g00099 | Cma-Chr1:455264 | Cma10g00659 | Cma-Chr10:2980345 | 2.89E-43 | wgd | |
Cma10g00659 | Cma-Chr10:2980345 | Cma11g00638 | Cma-Chr11:3083677 | 9.61E-99 | wgd | |
Cma10g00659 | Cma-Chr10:2980345 | Cma12g01265 | Cma-Chr12:9873149 | 4.95E-64 | wgd | |
Cma10g00659 | Cma-Chr10:2980345 | Cma05g01358 | Cma-Chr5:10234374 | 1.06E-72 | wgd | |
Cma10g00659 | Cma-Chr10:2980345 | Cma08g00723 | Cma-Chr8:4366261 | 7.57E-48 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35733 | PF00847 | AP2 | 5.00E-13 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma10g00659 | K09286 | - | csv:101219745 | 306.99 |