Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00659 ATGCCCCTGCTTATTGAGAATGACTCTACAACTTGTAGCTTCTCCTCGCCGTCGCCGTCGCCGTCTTCGTCGGGGAGTTTATCCACGGTTCCATTGAGGGAGAGCGATCAGTCAGGGAAACGAGCCAAACGGCCCAGAGAAAACAGCAACAGCAAACACCCACTCTTCCGTGGGGTCCGAATGAGGGCATGGGGGAAATGGGTGTCCGAGATTCGTGAGCCTCGAAAGAAGAGTCGGATCTGGCTTGGCACTTTCTCTACTCCTGAAATGGCCGCACGTGCCCACGACGTTGCCGCTCTCACCATTAAAGGAAACTCCGCCATTCTCAACTTCCCTGAACTCGCCGATCAATTCCCCCGCCCCGCTTCCAACTCCCCTCGCGACGTTCAAGCCGCCGCCGCCAAAGCCGCCTCCATGGAAATCCCAACTCCCCCACCTTCATCATCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTATGTCCATCGACGCCGGAGGAACTGAGTGAAATAGTGGAGCTCCCGAGTTTAGGAACGAGTTACGAAACGGCCGAGTTGGGAAACGAATTCGTATTCGTCGACTCAGTGGAAGGTTGGCTGTATTCATACCCATGGTATCAAAGAGTGAATAACAATGCAGATGAAGAACAGAGCCATGGCTTCTTCAGAGACCAGATTTCAACAGACTCCATAACTCCTCCATCTTCAACCTTCGAAGCTTTCTTATGGCAATATTAA 753 53.39 MPLLIENDSTTCSFSSPSPSPSSSGSLSTVPLRESDQSGKRAKRPRENSNSKHPLFRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALTIKGNSAILNFPELADQFPRPASNSPRDVQAAAAKAASMEIPTPPPSSSSSSSSSSSSSSSSSSLCPSTPEELSEIVELPSLGTSYETAELGNEFVFVDSVEGWLYSYPWYQRVNNNADEEQSHGFFRDQISTDSITPPSSTFEAFLWQY 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2980345 2981097 + CmaCh10G006590.1 Cma10g00659 301975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00659 250 MobiDBLite consensus disorder prediction 1 35 - -
Cma10g00659 250 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Cma10g00659 250 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Cma10g00659 250 Pfam AP2 domain 54 104 IPR001471 GO:0003700|GO:0006355
Cma10g00659 250 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 17 249 - -
Cma10g00659 250 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
Cma10g00659 250 MobiDBLite consensus disorder prediction 1 55 - -
Cma10g00659 250 SUPERFAMILY DNA-binding domain 55 113 IPR016177 GO:0003677
Cma10g00659 250 MobiDBLite consensus disorder prediction 119 170 - -
Cma10g00659 250 MobiDBLite consensus disorder prediction 142 170 - -
Cma10g00659 250 Gene3D AP2/ERF domain 55 113 IPR036955 GO:0003700|GO:0006355
Cma10g00659 250 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 17 249 - -
Cma10g00659 250 MobiDBLite consensus disorder prediction 36 53 - -
Cma10g00659 250 SMART rav1_2 55 118 IPR001471 GO:0003700|GO:0006355
Cma10g00659 250 CDD AP2 54 114 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00635 Cma-Chr9:3002095 Cma10g00659 Cma-Chr10:2980345 1.33E-59 dispersed
Cma10g00659 Cma-Chr10:2980345 Cma12g00253 Cma-Chr12:1285060 9.63E-58 dispersed
Cma01g00099 Cma-Chr1:455264 Cma10g00659 Cma-Chr10:2980345 2.89E-43 wgd
Cma10g00659 Cma-Chr10:2980345 Cma11g00638 Cma-Chr11:3083677 9.61E-99 wgd
Cma10g00659 Cma-Chr10:2980345 Cma12g01265 Cma-Chr12:9873149 4.95E-64 wgd
Cma10g00659 Cma-Chr10:2980345 Cma05g01358 Cma-Chr5:10234374 1.06E-72 wgd
Cma10g00659 Cma-Chr10:2980345 Cma08g00723 Cma-Chr8:4366261 7.57E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35733 PF00847 AP2 5.00E-13 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00659 K09286 - csv:101219745 306.99