Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00669 ATGAGAATTTCCGCCATAGCCAAACACCTTCCAAACAGCTTTCATCATCTTCTCCACATGACCACATCTTTTTCTTCTCCGGAAACCATTTCCTTCTTCCTCCTCCTCCTCCTCCTCTGTTCCCACCATGTCAATTCCCACCTCTACGAACAAGAACACTCTGTTCTTCTCCGACTCAACCACTTCTGGCACAACCAACCGCCGCTTCACCATTGGCGCTCCTCCAATGCTTCTCATTGTACATGGCCGGAGGTTCAGTGTACTAACAATTCCGTCACTGCTCTTCTTTTCCCTTCCTATAATTTGAACGGAACCTTCCCCCCTTTCATTTGCGACCTCAAAAATCTCACCTTTATTGATCTTCAGTACAATTTCATCACCGGCGGCTTTCCGACCACGCTTTACAATTGCTCGAACCTTAATTACCTCGACCTCTCACAGAATTACTTTGTCGGTTCGATTCCTGATGACATCGACCGCTTGTCTCGTCTCCAGTTTCTTAACCTTGGCGCAAACAACTTCTCCGGTGACATTCCGACAGCCGTTTCTCGGTTGTCGGAACTCCGGTACCTTCATCTTTTTATGAATCAATTCAATGGGACTTACCCATCTGAAATCGGCAACTTATCGAATCTGGAAGAGTTGCTGTTGGCTTATAATTCAAATCTGCTACCAGCTGAATTGCCTCCCAGTTTCGCCCAGTTGAAGAAATTGACGTTTTTGTGGATGGCAAAATCAAACGTTAACGGTGAAATTCCAGAATGGATCGGAAACTTGACCGCCCTTGAGCGATTGGATTTGTCGAAGAATCATTTGATTGGGGAAATTCCTAGCAGTTTGTTTACATTGAAGAATCTCAGCATCGTTTATCTCTACAAGAACAATCTATCAGGTAAAATTCCACAGCGGATTGATTCCAAGAAAATCACCGAATACGACCTGTCGGAAAATAACCTGACCGGAAGAATTCCGGCGGATATCGGCGAACTACAGGAACTAACGGCTCTGCTTCTGTGTTTAAATCAGTTAAGTGGAGAAATCCCAGAAAGCATCGGTCGTCTTCCATTATTAACAGATGTCAGATTATTCAGCAACAATTTAAACGGTACATTACCGCCAGATTTCGGGCGAAATTCGATCCTCGAAAGTTTTCAGGTGAGTTCAAATAAGCTCACCGGAAACTTGCCGGAACACCTCTGCTCCGGCGGTAAGCTCAAAGGAGTGATTGCTTACGACAATAATCTTAGTGGGGAATTACCAGAATCTCTTGGGAGTTGCGATAGCTTATTCATTATTGATGTTCATAAGAACAACTTCTCCGGGAAAATTCCGGTCGGTTTATGGACGTCTCTGAATTTAACATTGGTAATGATGAACGACAATTCTTTCATGGATGAACTCCCTAGGAGAATCTCCAAGAATCTCGCGAGATTACAAATAGGTAACAACAAATTTTCAGGGAAAATCCCATCGGAGTTATCTTCATTTTGGAATTTGACTGAATTTGAAGCAAGCAATAATCGATTGACAGGACGAATTCCTGAAGAACTCACTGCCCTTTCAAAGATGAACAAGCTATTGCTCGATGGAAATCAACTCACCGGGGAGCTTCCATGGAACATCATTTCATGGAAATCATTGCACAGCCTTAAACTCAGTCGAAATCATCTCTCTGGTAAAATTCCAAACGAATTTTGCAATTTACCAAGCCTTAATGATCTTGATCTATCAGAGAATCGACTTTCCGGAACAATTCCGATTGAACTGGGAAATTTGAACTTGAATTTCCTCAACCTCTCATCAAATTTTCTGTCTGGGAAAATCCCGCCTGCATTTGGAAATGAAATCTATGCAAGAAGCTTTTTGAACAATCCGGGTCTTTGTTTAAATCTGGACGGCTGCAGTTTAAGAACTCAGAATTTGCGAAAGATTTCATCGCAGCATCTTGCTCTGATCGTATGTTTGGGCGTAATAATATCCATATTCTTTGTAGTATCTGCTCTGTACATAATCAAAATCTATACAAAAACTGGAATCAAAGCAGATGTTGAATGGAAATTTACATCATTTCAGAGGCTGAATTTCTCGGAGGGTAATCTTTTATCTGGGCTGTCGGAGAACAACGTGATCGGCAGCGGTGGATCCGGGAAAGTTTACCGGATTCCAGTTAATAATCTGGGCGATATGGTGGCCGTGAAGAGAATATGGAACAGCAGAAAGTCAGACCACAAGCTTGAGAAAGAATTCATGGCGGAAGTTGAGATTCTCAGTTTGATTCGACATAACAATATAATCAAACTCCTCTGCTGCGTTTCCTGTGAAAGTACACGACTGCTCGTTTACGAGTACATGGAGAAGCAAAGCCTGGACAAATGGCTACACAATAAGAACTCACTGCCAAGAATTGCAGGGTCGGACGCTGTTCACGGTGTCGCCCTCAATTGGCCGATGAGATTTCAAATTGCAGTGGGGGTAGCACAGGGCCTCTGTTATATGCACCATGAATGCTCCCCGCCGGTAATTCACAGAGACTTGAAGTCCAGCAATATCTTACTAGATTCAGACTTCAATGCCAAAATAGCAGACTTTGGCTTAGCCAAGATGCTGGTGAAGCAAGGGGAACCAGCTTCAGTCTCCGCTGTCGCGGGATCCTTCGGATACATGGCTCCAGAGTATGCCCAGATACCAAGAATTAACGAGAAGATCGATGTGTTTAGCTTTGGAGTTATACTTCTAGAGTTGGTGACCGGAAAGGAAGCTCTTACCGGCAATGAAGACTCGTCTCTGGCTATGTGGGCTTGGGAGTTCATTAAACAAGGCAAGGCAATAGTCGAAGCATTGGATGAGGATGTGAAGGAGACACATTATCTTGATGAAATGTGCAGTGTGTTCAAACTGGGACTGATCTGCACTTCCAGTGCGCCAACCAGCCGGCCGAGCATGAACCAGGCTCTGCAAATCTTGGTCCGCAGCCGGACCATGGCACCTCAAAACCATGGAGATCAAAAAGTATAG 3015 43.95 MRISAIAKHLPNSFHHLLHMTTSFSSPETISFFLLLLLLCSHHVNSHLYEQEHSVLLRLNHFWHNQPPLHHWRSSNASHCTWPEVQCTNNSVTALLFPSYNLNGTFPPFICDLKNLTFIDLQYNFITGGFPTTLYNCSNLNYLDLSQNYFVGSIPDDIDRLSRLQFLNLGANNFSGDIPTAVSRLSELRYLHLFMNQFNGTYPSEIGNLSNLEELLLAYNSNLLPAELPPSFAQLKKLTFLWMAKSNVNGEIPEWIGNLTALERLDLSKNHLIGEIPSSLFTLKNLSIVYLYKNNLSGKIPQRIDSKKITEYDLSENNLTGRIPADIGELQELTALLLCLNQLSGEIPESIGRLPLLTDVRLFSNNLNGTLPPDFGRNSILESFQVSSNKLTGNLPEHLCSGGKLKGVIAYDNNLSGELPESLGSCDSLFIIDVHKNNFSGKIPVGLWTSLNLTLVMMNDNSFMDELPRRISKNLARLQIGNNKFSGKIPSELSSFWNLTEFEASNNRLTGRIPEELTALSKMNKLLLDGNQLTGELPWNIISWKSLHSLKLSRNHLSGKIPNEFCNLPSLNDLDLSENRLSGTIPIELGNLNLNFLNLSSNFLSGKIPPAFGNEIYARSFLNNPGLCLNLDGCSLRTQNLRKISSQHLALIVCLGVIISIFFVVSALYIIKIYTKTGIKADVEWKFTSFQRLNFSEGNLLSGLSENNVIGSGGSGKVYRIPVNNLGDMVAVKRIWNSRKSDHKLEKEFMAEVEILSLIRHNNIIKLLCCVSCESTRLLVYEYMEKQSLDKWLHNKNSLPRIAGSDAVHGVALNWPMRFQIAVGVAQGLCYMHHECSPPVIHRDLKSSNILLDSDFNAKIADFGLAKMLVKQGEPASVSAVAGSFGYMAPEYAQIPRINEKIDVFSFGVILLELVTGKEALTGNEDSSLAMWAWEFIKQGKAIVEALDEDVKETHYLDEMCSVFKLGLICTSSAPTSRPSMNQALQILVRSRTMAPQNHGDQKV 1004
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3044952 3048078 + CmaCh10G006690.1 Cma10g00669 301985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00669 1004 SUPERFAMILY L domain-like 59 303 - -
Cma10g00669 1004 Gene3D Transferase(Phosphotransferase) domain 1 784 1003 - -
Cma10g00669 1004 ProSitePatterns Serine/Threonine protein kinases active-site signature. 840 852 IPR008271 GO:0004672|GO:0006468
Cma10g00669 1004 Gene3D Ribonuclease Inhibitor 307 473 IPR032675 -
Cma10g00669 1004 Gene3D Ribonuclease Inhibitor 474 648 IPR032675 -
Cma10g00669 1004 SMART serkin_6 704 993 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00669 1004 Gene3D Ribonuclease Inhibitor 49 200 IPR032675 -
Cma10g00669 1004 Gene3D Phosphorylase Kinase; domain 1 677 783 - -
Cma10g00669 1004 Gene3D Ribonuclease Inhibitor 201 306 IPR032675 -
Cma10g00669 1004 SMART LRR_typ_2 568 592 IPR003591 -
Cma10g00669 1004 SMART LRR_typ_2 259 283 IPR003591 -
Cma10g00669 1004 SMART LRR_typ_2 354 378 IPR003591 -
Cma10g00669 1004 SMART LRR_typ_2 161 185 IPR003591 -
Cma10g00669 1004 Pfam Leucine rich repeat 522 581 IPR001611 GO:0005515
Cma10g00669 1004 Pfam Leucine rich repeat 115 174 IPR001611 GO:0005515
Cma10g00669 1004 SUPERFAMILY RNI-like 308 656 - -
Cma10g00669 1004 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 32 995 - -
Cma10g00669 1004 Pfam Protein kinase domain 706 986 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00669 1004 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 32 995 - -
Cma10g00669 1004 ProSitePatterns Protein kinases ATP-binding region signature. 710 733 IPR017441 GO:0005524
Cma10g00669 1004 ProSiteProfiles Protein kinase domain profile. 704 994 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00669 1004 SUPERFAMILY Protein kinase-like (PK-like) 699 988 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00669 Cma11g00649 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00669 Cma-Chr10:3044952 Cma13g00622 Cma-Chr13:5990548 0 dispersed
Cma12g00237 Cma-Chr12:1182722 Cma10g00669 Cma-Chr10:3044952 0 transposed
Cma10g00669 Cma-Chr10:3044952 Cma11g00649 Cma-Chr11:3152675 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68847 PF00069 Pkinase 1.80E-49 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00669 - - csv:101214935 1547.33