Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00673 ATGGGGAGGGCGACAAGATGGTTCAAGAACTTCTTTGGGATTAAGAGAGACAGAGAAAATTCCAACCAAACAAAACCCACTTCCAATTCCCCCGCCGACAACGATCTCTGCAATAATCCCGCCACAGTACCGCCGTATTTATCAGCGGAAGAGGCGGCGTGGTTGAAATCCTTCTACTCGGAAACAGATAAAGAACAGAGCAAGCATGCAATAGCAGTGGCTGCAGCCACTGCCGCAGCAGCCGACGCGGCGGTTGCTGCAGCACAAGCTGCGGTGGCTGTAGTCCGCTTGACTAGCCATGGTAGAGGTACTATGTTTGGCGGCGGGCGGGAAAGATGGGCGTCTGTAAAGATTCAAACTTGCTTCAGAGGGTATCTGGCGAGGAAAGCACTGAGAGCACTGAAAGGTCTGGTGAAATTACAGGCGGTTGTTAGGGGATATTTTGTTCGTAAACAAGCAACAGCTACTCTTCTCAGTATGCAAGCTTTAATCAGAGCTCAAGCCACCGTTCGGTCTCAGAGAACTCGCAGACTTGAAATCCGAGCCCGCAAGAACACGGAGAGATTTGACGATACGAACAGCGAACACACTGCTTCAGTTCATAGCAGAAGGCTCTCTGCTTCATTAGATAACATGATATTTACAGCGCTGGAAGAAAGCCCCAAAATCGTGGAAATGGACACCAGCCGACCCAAATCCATGTCTCGCCGGACGAACACGTCGTTGTCGGAATTGGGTGACGACCCATTTAACCAACCATTGTCGTCTCCACTCCCTTGTCGGACACCATCGCGATTGCAGATCCCAGATGGTCGGAATTTCCACGATTCCGACTGGGGTTTTGTGGCTGAGGAATGCCGTTTAATCTCGACAGCGCAGAGCACTCCAAGAATTGTCAGCTGTGGTGGTTCCAATGGTGGTCCTCCGACGCCGGCGAAGAGTATGTGCGGCGACAATTTCTTCAGAGGGTACTTGAATTTCCCAAGTTACATGGCGAATACACAATCGTTTAAAGCGAAATTGAGATCTCAAAGTGCTCCAAAACAGAGGCCAGAGCCGGGATCGAAGAAAAGAGTTTCATTGAACGAACTAATGGAATCAAGAAGCAGCCTTAGTGGGGTTCGAATGCAGAGATCATGCTCCCAAGTTCAAGACGCCATTAATTTCAAGAACGCAGTGATGAGCAAACTCGACCGGCCATCGGAATTCAACAACTTGCAGAGAAAAATATGA 1233 49.55 MGRATRWFKNFFGIKRDRENSNQTKPTSNSPADNDLCNNPATVPPYLSAEEAAWLKSFYSETDKEQSKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGGGRERWASVKIQTCFRGYLARKALRALKGLVKLQAVVRGYFVRKQATATLLSMQALIRAQATVRSQRTRRLEIRARKNTERFDDTNSEHTASVHSRRLSASLDNMIFTALEESPKIVEMDTSRPKSMSRRTNTSLSELGDDPFNQPLSSPLPCRTPSRLQIPDGRNFHDSDWGFVAEECRLISTAQSTPRIVSCGGSNGGPPTPAKSMCGDNFFRGYLNFPSYMANTQSFKAKLRSQSAPKQRPEPGSKKRVSLNELMESRSSLSGVRMQRSCSQVQDAINFKNAVMSKLDRPSEFNNLQRKI 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3057232 3059524 + CmaCh10G006730.1 Cma10g00673 301989

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00673 410 ProSiteProfiles IQ motif profile. 135 162 IPR000048 GO:0005515
Cma10g00673 410 PANTHER IQ-DOMAIN 5-RELATED 1 401 - -
Cma10g00673 410 MobiDBLite consensus disorder prediction 233 259 - -
Cma10g00673 410 MobiDBLite consensus disorder prediction 23 37 - -
Cma10g00673 410 Gene3D - 112 153 - -
Cma10g00673 410 MobiDBLite consensus disorder prediction 18 40 - -
Cma10g00673 410 Pfam IQ calmodulin-binding motif 138 152 IPR000048 GO:0005515
Cma10g00673 410 Pfam IQ calmodulin-binding motif 112 132 IPR000048 GO:0005515
Cma10g00673 410 Pfam Protein of unknown function (DUF4005) 295 373 IPR025064 -
Cma10g00673 410 MobiDBLite consensus disorder prediction 225 259 - -
Cma10g00673 410 SMART iq_5 133 154 IPR000048 GO:0005515
Cma10g00673 410 SMART iq_5 110 132 IPR000048 GO:0005515
Cma10g00673 410 ProSiteProfiles IQ motif profile. 111 139 IPR000048 GO:0005515
Cma10g00673 410 PANTHER - 1 401 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00673 - - - csv:101215651 609.757
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00673 Cma11g00652 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01479 Cma-Chr2:8470456 Cma10g00673 Cma-Chr10:3057232 1.28E-35 dispersed
Cma10g00673 Cma-Chr10:3057232 Cma14g01288 Cma-Chr14:10183858 3.49E-83 dispersed
Cma01g00093 Cma-Chr1:425355 Cma10g00673 Cma-Chr10:3057232 5.69E-71 wgd
Cma10g00673 Cma-Chr10:3057232 Cma11g00652 Cma-Chr11:3171146 0 wgd
Cma10g00673 Cma-Chr10:3057232 Cma17g00759 Cma-Chr17:6124935 1.99E-103 wgd
Cma10g00673 Cma-Chr10:3057232 Cma08g00741 Cma-Chr8:4454707 1.25E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g260 . . . . Bpe01g00561 . . Bma11g00541 Cmo10g00702 Cmo11g00664 . . . . Sed08g0818 Cpe04g01092 Cpe18g00396 Bhi02g01952 Tan09g1205 Cmetu04g0490 . Hepe09g0820 . . . . . . . . . . Cone16ag0724 . Cone7ag0718 Lsi06g00223 . . Cme02g00188 Blo08g00322 Blo14g00521 . . Bpe08g00502 . . . . . . Cma10g00673 Cma11g00652 Car10g00607 Car11g00535 . . . . . . . . . Cla03g01545 Cam03g1624 Cec03g1666 Cco03g1666 Clacu03g1648 Cmu03g2201 Cre03g1876 . Csa01g02871 Chy02g01166 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma04g01355 CCT,CST,ECH 99 267 IQD Protein Family AT3G09710 55.2 4.6e-47 186.4
Cma06g00359 CCT,ECH 1 266 IQD Protein Family AT5G03040 50.9 5.5e-61 232.6
Cma15g00434 CCT,CST,ECH 2 464 IQD Protein Family AT3G52290 54.5 6.7e-101 365.2
Cma04g02600 CCT,CST,ECH 1 473 IQD Protein Family AT3G52290 54.7 1.1e-100 364.4
Cma10g00857 CCT 1 394 IQD Protein Family AT3G22190 56.8 1.1e-92 337.8
Cma11g00912 CCT 43 448 IQD Protein Family AT3G22190 55.0 5.8e-89 325.5
Cma01g01729 . 1 434 IQD Protein Family AT2G26180 59.5 3.9e-114 409.1
Cma09g00343 . 1 438 IQD Protein Family AT2G26180 58.0 1.1e-111 401.0
Cma07g00203 . 1 279 IQD Protein Family AT2G33990 51.6 4.0e-64 242.3
Cma16g00415 . 40 223 IQD Protein Family AT2G33990 52.9 1.2e-47 187.6
Cma07g00203 . 1 253 IQD Protein Family AT3G15050 51.4 7.7e-60 228.0
Cma16g00415 . 43 216 IQD Protein Family AT3G15050 61.0 4.1e-53 205.7
Cma06g00946 . 1 500 IQD Protein Family AT4G00820 55.7 8.8e-127 451.4
Cma06g00946 . 1 500 IQD Protein Family AT1G01110 52.7 4.0e-124 442.6
Cma08g00741 CCT,CST,ECH 220 616 IQD Protein Family AT3G16490 51.6 5.9e-72 268.9
Cma17g00759 CCT,CST,ECH 1 389 IQD Protein Family AT3G16490 51.5 4.2e-70 262.7
Cma10g00673 CST 1 376 IQD Protein Family AT3G16490 53.1 5.2e-68 255.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006708 0 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00673 Cma_Chr10 FPKM 3.213321 3.730617 12.706367 12.375471 20.749214 17.035013 22.295921 50.847256 48.432098 48.704823