Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00673 ATGGGGAGGGCGACAAGATGGTTCAAGAACTTCTTTGGGATTAAGAGAGACAGAGAAAATTCCAACCAAACAAAACCCACTTCCAATTCCCCCGCCGACAACGATCTCTGCAATAATCCCGCCACAGTACCGCCGTATTTATCAGCGGAAGAGGCGGCGTGGTTGAAATCCTTCTACTCGGAAACAGATAAAGAACAGAGCAAGCATGCAATAGCAGTGGCTGCAGCCACTGCCGCAGCAGCCGACGCGGCGGTTGCTGCAGCACAAGCTGCGGTGGCTGTAGTCCGCTTGACTAGCCATGGTAGAGGTACTATGTTTGGCGGCGGGCGGGAAAGATGGGCGTCTGTAAAGATTCAAACTTGCTTCAGAGGGTATCTGGCGAGGAAAGCACTGAGAGCACTGAAAGGTCTGGTGAAATTACAGGCGGTTGTTAGGGGATATTTTGTTCGTAAACAAGCAACAGCTACTCTTCTCAGTATGCAAGCTTTAATCAGAGCTCAAGCCACCGTTCGGTCTCAGAGAACTCGCAGACTTGAAATCCGAGCCCGCAAGAACACGGAGAGATTTGACGATACGAACAGCGAACACACTGCTTCAGTTCATAGCAGAAGGCTCTCTGCTTCATTAGATAACATGATATTTACAGCGCTGGAAGAAAGCCCCAAAATCGTGGAAATGGACACCAGCCGACCCAAATCCATGTCTCGCCGGACGAACACGTCGTTGTCGGAATTGGGTGACGACCCATTTAACCAACCATTGTCGTCTCCACTCCCTTGTCGGACACCATCGCGATTGCAGATCCCAGATGGTCGGAATTTCCACGATTCCGACTGGGGTTTTGTGGCTGAGGAATGCCGTTTAATCTCGACAGCGCAGAGCACTCCAAGAATTGTCAGCTGTGGTGGTTCCAATGGTGGTCCTCCGACGCCGGCGAAGAGTATGTGCGGCGACAATTTCTTCAGAGGGTACTTGAATTTCCCAAGTTACATGGCGAATACACAATCGTTTAAAGCGAAATTGAGATCTCAAAGTGCTCCAAAACAGAGGCCAGAGCCGGGATCGAAGAAAAGAGTTTCATTGAACGAACTAATGGAATCAAGAAGCAGCCTTAGTGGGGTTCGAATGCAGAGATCATGCTCCCAAGTTCAAGACGCCATTAATTTCAAGAACGCAGTGATGAGCAAACTCGACCGGCCATCGGAATTCAACAACTTGCAGAGAAAAATATGA 1233 49.55 MGRATRWFKNFFGIKRDRENSNQTKPTSNSPADNDLCNNPATVPPYLSAEEAAWLKSFYSETDKEQSKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGGGRERWASVKIQTCFRGYLARKALRALKGLVKLQAVVRGYFVRKQATATLLSMQALIRAQATVRSQRTRRLEIRARKNTERFDDTNSEHTASVHSRRLSASLDNMIFTALEESPKIVEMDTSRPKSMSRRTNTSLSELGDDPFNQPLSSPLPCRTPSRLQIPDGRNFHDSDWGFVAEECRLISTAQSTPRIVSCGGSNGGPPTPAKSMCGDNFFRGYLNFPSYMANTQSFKAKLRSQSAPKQRPEPGSKKRVSLNELMESRSSLSGVRMQRSCSQVQDAINFKNAVMSKLDRPSEFNNLQRKI 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3057232 3059524 + CmaCh10G006730.1 Cma10g00673 301989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00673 410 ProSiteProfiles IQ motif profile. 135 162 IPR000048 GO:0005515
Cma10g00673 410 PANTHER IQ-DOMAIN 5-RELATED 1 401 - -
Cma10g00673 410 MobiDBLite consensus disorder prediction 233 259 - -
Cma10g00673 410 MobiDBLite consensus disorder prediction 23 37 - -
Cma10g00673 410 Gene3D - 112 153 - -
Cma10g00673 410 MobiDBLite consensus disorder prediction 18 40 - -
Cma10g00673 410 Pfam IQ calmodulin-binding motif 138 152 IPR000048 GO:0005515
Cma10g00673 410 Pfam IQ calmodulin-binding motif 112 132 IPR000048 GO:0005515
Cma10g00673 410 Pfam Protein of unknown function (DUF4005) 295 373 IPR025064 -
Cma10g00673 410 MobiDBLite consensus disorder prediction 225 259 - -
Cma10g00673 410 SMART iq_5 133 154 IPR000048 GO:0005515
Cma10g00673 410 SMART iq_5 110 132 IPR000048 GO:0005515
Cma10g00673 410 ProSiteProfiles IQ motif profile. 111 139 IPR000048 GO:0005515
Cma10g00673 410 PANTHER - 1 401 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00673 Cma11g00652 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01479 Cma-Chr2:8470456 Cma10g00673 Cma-Chr10:3057232 1.28E-35 dispersed
Cma10g00673 Cma-Chr10:3057232 Cma14g01288 Cma-Chr14:10183858 3.49E-83 dispersed
Cma01g00093 Cma-Chr1:425355 Cma10g00673 Cma-Chr10:3057232 5.69E-71 wgd
Cma10g00673 Cma-Chr10:3057232 Cma11g00652 Cma-Chr11:3171146 0 wgd
Cma10g00673 Cma-Chr10:3057232 Cma17g00759 Cma-Chr17:6124935 1.99E-103 wgd
Cma10g00673 Cma-Chr10:3057232 Cma08g00741 Cma-Chr8:4454707 1.25E-06 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00673 - - csv:101215651 609.757