Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma10g00675 | ATGATGTCGAGACTTCAGCGGCCTCCTCCTCCTCCTCTTCTTGTTCTTGTTCTTGTTCTTTTGCTGAGCCAGAGTCTCACCCTAACGCACTGCCATACCAAGGGACTCAAACCCAGGAGCTCGCCCAAGACTGCTCTTCCCGAGAATTCCACCACAACCCAATTCTCAGAGCAGCAATTTATGAAATGGGTCAAATTTGTCGGCAGTCTCCGACACTCTGTTTTCAGAACGGCGAAGAACAACCTTTTTTCTTCTTATACTCTCCATGTGGCTAAGAATCCGGCTGTCGGGGACTTCACGTCGATCCAAGACGCCGTCGATTCCCTCCCTTCAATCAATTTGGTCAGAGTCGTCATCAAGGTTCATGAAGGTGTATACACAGAAAAGGTGAACATACCCCCGTTAAAATCATTCATAACAATCGAAGGAGCAGGCGCAGACAAAACGATTGTTCAATGGGGGGACACCGCACAAACACCAGGCCCAAAGGGGCAGCCAATGGGGACTTACAACTCCGCAACATTCGCAGTAAATTCCCCTTATTTCATAGCCAAAAACATCACATTCAAGAACACAACCCCTGTTCCAGCACCAGGGGCAATCGGGAAACAGGCGGTGGCGTTCAGAATCTCGGCGGACACAGCAGCATTCTACGGCTGCAGATTCTTGGGAGCTCAAGACACACTATACGACCATTTGGGTCGGCATTATTACAAGGATTGTTACATAGAAGGGTCGGTGGACTTCATATTCGGAAACGGGCTGTCTCTGTTCGAGGGATGTCACGTGCACGCAATAGCGCAGAATGCAGGGGCGTTGACAGCGCAGGGGAGAAGCAGCCTGCTGGAGGACACAGGGTTCTCGTTCGTAAACTGTAAGGTCACGGGGTCTGGAGCGCTATACTTGGGGAGGGCATGGGGGCCCTTCTCTAGGGTCGTCTTCGCTTACACCTATATGGACAACATTATTCTCCCCAAAGGCTGGTACAACTGGGGCGATCCCAGCCGCGAAATGACCGTGTTTTATGGGCAATACAAATGTACAGGCGAAGGAGCTAGCTTTGCCGGCAGAGTTTCATGGTCGAGAGAGCTCACTGATGAAGAAGCCAAGCCCTTCATTTCCCTTACCTTCATTGATGGCTCTGAATGGATCAAAATCTAA | 1161 | 50.47 | MMSRLQRPPPPPLLVLVLVLLLSQSLTLTHCHTKGLKPRSSPKTALPENSTTTQFSEQQFMKWVKFVGSLRHSVFRTAKNNLFSSYTLHVAKNPAVGDFTSIQDAVDSLPSINLVRVVIKVHEGVYTEKVNIPPLKSFITIEGAGADKTIVQWGDTAQTPGPKGQPMGTYNSATFAVNSPYFIAKNITFKNTTPVPAPGAIGKQAVAFRISADTAAFYGCRFLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNGLSLFEGCHVHAIAQNAGALTAQGRSSLLEDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIILPKGWYNWGDPSREMTVFYGQYKCTGEGASFAGRVSWSRELTDEEAKPFISLTFIDGSEWIKI | 386 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 3060694 | 3062613 | - | CmaCh10G006750.1 | Cma10g00675 | 301991 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma10g00675 | 386 | Gene3D | - | 84 | 386 | IPR012334 | - | |
Cma10g00675 | 386 | Pfam | Pectinesterase | 95 | 380 | IPR000070 | GO:0030599|GO:0042545 | |
Cma10g00675 | 386 | ProSitePatterns | Pectinesterase signature 2. | 243 | 252 | IPR033131 | - | |
Cma10g00675 | 386 | PANTHER | PECTINESTERASE | 6 | 385 | - | - | |
Cma10g00675 | 386 | MobiDBLite | consensus disorder prediction | 33 | 52 | - | - | |
Cma10g00675 | 386 | SUPERFAMILY | Pectin lyase-like | 83 | 385 | IPR011050 | - | |
Cma10g00675 | 386 | PANTHER | ACYL-COA THIOESTER HYDROLASE YBHC-RELATED | 6 | 385 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma10g00675 | Cma11g00653 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g01541 | Cma-Chr2:8751985 | Cma10g00675 | Cma-Chr10:3060694 | 1.44E-105 | dispersed | |
Cma04g00770 | Cma-Chr4:3911515 | Cma10g00675 | Cma-Chr10:3060694 | 9.17E-168 | dispersed | |
Cma10g00675 | Cma-Chr10:3060694 | Cma15g01122 | Cma-Chr15:7148399 | 7.28E-109 | dispersed | |
Cma14g01588 | Cma-Chr14:11920033 | Cma10g00675 | Cma-Chr10:3060694 | 5.40E-76 | dispersed | |
Cma20g01082 | Cma-Chr20:8314197 | Cma10g00675 | Cma-Chr10:3060694 | 1.67E-74 | dispersed | |
Cma01g00281 | Cma-Chr1:1336866 | Cma10g00675 | Cma-Chr10:3060694 | 1.65E-43 | transposed | |
Cma17g01014 | Cma-Chr17:7377689 | Cma10g00675 | Cma-Chr10:3060694 | 5.69E-103 | transposed | |
Cma10g00790 | Cma-Chr10:3634710 | Cma10g00675 | Cma-Chr10:3060694 | 1.62E-89 | transposed | |
Cma15g00251 | Cma-Chr15:1210368 | Cma10g00675 | Cma-Chr10:3060694 | 1.36E-90 | transposed | |
Cma10g00675 | Cma-Chr10:3060694 | Cma11g00653 | Cma-Chr11:3173508 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma10g00675 | K01051 | - | csv:101215894 | 696.812 |