Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00675 ATGATGTCGAGACTTCAGCGGCCTCCTCCTCCTCCTCTTCTTGTTCTTGTTCTTGTTCTTTTGCTGAGCCAGAGTCTCACCCTAACGCACTGCCATACCAAGGGACTCAAACCCAGGAGCTCGCCCAAGACTGCTCTTCCCGAGAATTCCACCACAACCCAATTCTCAGAGCAGCAATTTATGAAATGGGTCAAATTTGTCGGCAGTCTCCGACACTCTGTTTTCAGAACGGCGAAGAACAACCTTTTTTCTTCTTATACTCTCCATGTGGCTAAGAATCCGGCTGTCGGGGACTTCACGTCGATCCAAGACGCCGTCGATTCCCTCCCTTCAATCAATTTGGTCAGAGTCGTCATCAAGGTTCATGAAGGTGTATACACAGAAAAGGTGAACATACCCCCGTTAAAATCATTCATAACAATCGAAGGAGCAGGCGCAGACAAAACGATTGTTCAATGGGGGGACACCGCACAAACACCAGGCCCAAAGGGGCAGCCAATGGGGACTTACAACTCCGCAACATTCGCAGTAAATTCCCCTTATTTCATAGCCAAAAACATCACATTCAAGAACACAACCCCTGTTCCAGCACCAGGGGCAATCGGGAAACAGGCGGTGGCGTTCAGAATCTCGGCGGACACAGCAGCATTCTACGGCTGCAGATTCTTGGGAGCTCAAGACACACTATACGACCATTTGGGTCGGCATTATTACAAGGATTGTTACATAGAAGGGTCGGTGGACTTCATATTCGGAAACGGGCTGTCTCTGTTCGAGGGATGTCACGTGCACGCAATAGCGCAGAATGCAGGGGCGTTGACAGCGCAGGGGAGAAGCAGCCTGCTGGAGGACACAGGGTTCTCGTTCGTAAACTGTAAGGTCACGGGGTCTGGAGCGCTATACTTGGGGAGGGCATGGGGGCCCTTCTCTAGGGTCGTCTTCGCTTACACCTATATGGACAACATTATTCTCCCCAAAGGCTGGTACAACTGGGGCGATCCCAGCCGCGAAATGACCGTGTTTTATGGGCAATACAAATGTACAGGCGAAGGAGCTAGCTTTGCCGGCAGAGTTTCATGGTCGAGAGAGCTCACTGATGAAGAAGCCAAGCCCTTCATTTCCCTTACCTTCATTGATGGCTCTGAATGGATCAAAATCTAA 1161 50.47 MMSRLQRPPPPPLLVLVLVLLLSQSLTLTHCHTKGLKPRSSPKTALPENSTTTQFSEQQFMKWVKFVGSLRHSVFRTAKNNLFSSYTLHVAKNPAVGDFTSIQDAVDSLPSINLVRVVIKVHEGVYTEKVNIPPLKSFITIEGAGADKTIVQWGDTAQTPGPKGQPMGTYNSATFAVNSPYFIAKNITFKNTTPVPAPGAIGKQAVAFRISADTAAFYGCRFLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNGLSLFEGCHVHAIAQNAGALTAQGRSSLLEDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIILPKGWYNWGDPSREMTVFYGQYKCTGEGASFAGRVSWSRELTDEEAKPFISLTFIDGSEWIKI 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3060694 3062613 - CmaCh10G006750.1 Cma10g00675 301991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00675 386 Gene3D - 84 386 IPR012334 -
Cma10g00675 386 Pfam Pectinesterase 95 380 IPR000070 GO:0030599|GO:0042545
Cma10g00675 386 ProSitePatterns Pectinesterase signature 2. 243 252 IPR033131 -
Cma10g00675 386 PANTHER PECTINESTERASE 6 385 - -
Cma10g00675 386 MobiDBLite consensus disorder prediction 33 52 - -
Cma10g00675 386 SUPERFAMILY Pectin lyase-like 83 385 IPR011050 -
Cma10g00675 386 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 6 385 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00675 Cma11g00653 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01541 Cma-Chr2:8751985 Cma10g00675 Cma-Chr10:3060694 1.44E-105 dispersed
Cma04g00770 Cma-Chr4:3911515 Cma10g00675 Cma-Chr10:3060694 9.17E-168 dispersed
Cma10g00675 Cma-Chr10:3060694 Cma15g01122 Cma-Chr15:7148399 7.28E-109 dispersed
Cma14g01588 Cma-Chr14:11920033 Cma10g00675 Cma-Chr10:3060694 5.40E-76 dispersed
Cma20g01082 Cma-Chr20:8314197 Cma10g00675 Cma-Chr10:3060694 1.67E-74 dispersed
Cma01g00281 Cma-Chr1:1336866 Cma10g00675 Cma-Chr10:3060694 1.65E-43 transposed
Cma17g01014 Cma-Chr17:7377689 Cma10g00675 Cma-Chr10:3060694 5.69E-103 transposed
Cma10g00790 Cma-Chr10:3634710 Cma10g00675 Cma-Chr10:3060694 1.62E-89 transposed
Cma15g00251 Cma-Chr15:1210368 Cma10g00675 Cma-Chr10:3060694 1.36E-90 transposed
Cma10g00675 Cma-Chr10:3060694 Cma11g00653 Cma-Chr11:3173508 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00675 K01051 - csv:101215894 696.812