Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00690 ATGATCATCGGCGAACGCCACCGCCCTGGTCCGGTGGTTCACATCACTCCTTTGACGATACCGGAGGAGCCTGCAAGCGAGACGCGGTTTACTTATCCTCTGAGTGGAATCTCGGTGAGTTCCGATGGAAATGCCAATGGTGGCGATTACTCTTCCTATTATCTGAAAGAAGCTCTAGCGGCACTCCAGCGATATACGAACGTGTCAGAGATTGAATCGGATTCGGAATTATCCGGGCGGGAATCGGACGTTCCGGTGGATGCGTACTCCTGCGATAATTTCCGGATATTTGAGTTTAAGGTGAGGAAGTGCACGCGAGGACGGTCTCATGATTGGACGGAGTGTCCGTTCGCACATCCAGGCGAGAAGGCTCGCCGGAGAGATCCGAGGAAGTATCATTACTCTGGTACGGCTTGTCCCGACTTTCGTAAAGGTAACTGTAAAAAAGGCGATTCGTGTGAGTTTGCACATGGTGTATTCGAGTGTTGGCTCCATCCTGCTCGTTACAGGACTCAGCCGTGCAAGGACGGGACGAACTGTCGACGGAGGGTCTGTTTCTTCGCTCACACTCCTGAGCAACTTAGGGTTTTGCCACAGCAGAGCCCGAGAAGCGCGTACTCCCCCGAGCCGTACGACGAATCTCCTGTACGGCAGTGTTTGGATGGATCCTGTGCCAAATCGATGCCGTTTCTGTCTTCTCCGGTGTCTGTATCACCGTCGGCGACTCCAGTAGACTCCCCACCGTTATCTCCCATGACTCGATCGCTCGGCCGATCTCTTGGCTCAAGCTCCATTAATGAAATGGTCGCATCTCTCCGGAACTTGCATCTGAGCAAGGTGAAGTCTCTACCATCGTCCTGGAATGTTCAGATTGGATCCCCTGGTTATCCGTCTCGAGTCTGCCATGGATTCTGTAGCCTTCCAACAACACCAACTCGGGCTCCAACTGCTCCTGGAGTTGGGCGGCTCGACTTCTCGGACCACGGATTGCAGGAGGAACCAGCTATGGAGCGAGTGGAATCAGGAAGGGAGCTGAGGGCGAAGATGCTGGAGAAGCTGAGCAAGGAAAATTCTCTGGACCTGGTGGATTCAAGCTCTTCAGCTTGCACACCAGACGTTGGATGGGTATCAGAGCTGCTGAAAATGGGACGCAGCCCAGCTGAAACTGGAGGACTATAG 1179 53.69 MIIGERHRPGPVVHITPLTIPEEPASETRFTYPLSGISVSSDGNANGGDYSSYYLKEALAALQRYTNVSEIESDSELSGRESDVPVDAYSCDNFRIFEFKVRKCTRGRSHDWTECPFAHPGEKARRRDPRKYHYSGTACPDFRKGNCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTNCRRRVCFFAHTPEQLRVLPQQSPRSAYSPEPYDESPVRQCLDGSCAKSMPFLSSPVSVSPSATPVDSPPLSPMTRSLGRSLGSSSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRVCHGFCSLPTTPTRAPTAPGVGRLDFSDHGLQEEPAMERVESGRELRAKMLEKLSKENSLDLVDSSSSACTPDVGWVSELLKMGRSPAETGGL 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3123164 3125075 - CmaCh10G006900.1 Cma10g00690 302006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00690 392 MobiDBLite consensus disorder prediction 235 256 - -
Cma10g00690 392 SMART c3hfinal6 168 191 IPR000571 GO:0046872
Cma10g00690 392 SMART c3hfinal6 133 159 IPR000571 GO:0046872
Cma10g00690 392 ProSiteProfiles Zinc finger C3H1-type profile. 134 160 IPR000571 GO:0046872
Cma10g00690 392 PANTHER UNKEMPT FAMILY MEMBER 9 380 IPR045234 -
Cma10g00690 392 Gene3D - 134 197 - -
Cma10g00690 392 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 9 380 - -
Cma10g00690 392 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 158 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00112 Cma-Chr5:487440 Cma10g00690 Cma-Chr10:3123164 6.91E-77 dispersed
Cma09g00326 Cma-Chr9:1342960 Cma10g00690 Cma-Chr10:3123164 9.21E-108 dispersed
Cma10g00690 Cma-Chr10:3123164 Cma14g00450 Cma-Chr14:2142180 3.60E-62 dispersed
Cma20g00342 Cma-Chr20:1682067 Cma10g00690 Cma-Chr10:3123164 2.55E-55 dispersed
Cma01g01767 Cma-Chr1:11875855 Cma10g00690 Cma-Chr10:3123164 4.51E-101 wgd
Cma10g00690 Cma-Chr10:3123164 Cma11g00671 Cma-Chr11:3249244 0 wgd
Cma10g00690 Cma-Chr10:3123164 Cma12g01284 Cma-Chr12:9983593 2.51E-156 wgd
Cma10g00690 Cma-Chr10:3123164 Cma12g00622 Cma-Chr12:3290026 3.50E-85 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35735 PF00642 zf-CCCH 2.90E-06 CL0537 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00690 - - csv:101204432 686.411