Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma10g00690 | ATGATCATCGGCGAACGCCACCGCCCTGGTCCGGTGGTTCACATCACTCCTTTGACGATACCGGAGGAGCCTGCAAGCGAGACGCGGTTTACTTATCCTCTGAGTGGAATCTCGGTGAGTTCCGATGGAAATGCCAATGGTGGCGATTACTCTTCCTATTATCTGAAAGAAGCTCTAGCGGCACTCCAGCGATATACGAACGTGTCAGAGATTGAATCGGATTCGGAATTATCCGGGCGGGAATCGGACGTTCCGGTGGATGCGTACTCCTGCGATAATTTCCGGATATTTGAGTTTAAGGTGAGGAAGTGCACGCGAGGACGGTCTCATGATTGGACGGAGTGTCCGTTCGCACATCCAGGCGAGAAGGCTCGCCGGAGAGATCCGAGGAAGTATCATTACTCTGGTACGGCTTGTCCCGACTTTCGTAAAGGTAACTGTAAAAAAGGCGATTCGTGTGAGTTTGCACATGGTGTATTCGAGTGTTGGCTCCATCCTGCTCGTTACAGGACTCAGCCGTGCAAGGACGGGACGAACTGTCGACGGAGGGTCTGTTTCTTCGCTCACACTCCTGAGCAACTTAGGGTTTTGCCACAGCAGAGCCCGAGAAGCGCGTACTCCCCCGAGCCGTACGACGAATCTCCTGTACGGCAGTGTTTGGATGGATCCTGTGCCAAATCGATGCCGTTTCTGTCTTCTCCGGTGTCTGTATCACCGTCGGCGACTCCAGTAGACTCCCCACCGTTATCTCCCATGACTCGATCGCTCGGCCGATCTCTTGGCTCAAGCTCCATTAATGAAATGGTCGCATCTCTCCGGAACTTGCATCTGAGCAAGGTGAAGTCTCTACCATCGTCCTGGAATGTTCAGATTGGATCCCCTGGTTATCCGTCTCGAGTCTGCCATGGATTCTGTAGCCTTCCAACAACACCAACTCGGGCTCCAACTGCTCCTGGAGTTGGGCGGCTCGACTTCTCGGACCACGGATTGCAGGAGGAACCAGCTATGGAGCGAGTGGAATCAGGAAGGGAGCTGAGGGCGAAGATGCTGGAGAAGCTGAGCAAGGAAAATTCTCTGGACCTGGTGGATTCAAGCTCTTCAGCTTGCACACCAGACGTTGGATGGGTATCAGAGCTGCTGAAAATGGGACGCAGCCCAGCTGAAACTGGAGGACTATAG | 1179 | 53.69 | MIIGERHRPGPVVHITPLTIPEEPASETRFTYPLSGISVSSDGNANGGDYSSYYLKEALAALQRYTNVSEIESDSELSGRESDVPVDAYSCDNFRIFEFKVRKCTRGRSHDWTECPFAHPGEKARRRDPRKYHYSGTACPDFRKGNCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTNCRRRVCFFAHTPEQLRVLPQQSPRSAYSPEPYDESPVRQCLDGSCAKSMPFLSSPVSVSPSATPVDSPPLSPMTRSLGRSLGSSSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRVCHGFCSLPTTPTRAPTAPGVGRLDFSDHGLQEEPAMERVESGRELRAKMLEKLSKENSLDLVDSSSSACTPDVGWVSELLKMGRSPAETGGL | 392 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 3123164 | 3125075 | - | CmaCh10G006900.1 | Cma10g00690 | 302006 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma10g00690 | 392 | MobiDBLite | consensus disorder prediction | 235 | 256 | - | - | |
Cma10g00690 | 392 | SMART | c3hfinal6 | 168 | 191 | IPR000571 | GO:0046872 | |
Cma10g00690 | 392 | SMART | c3hfinal6 | 133 | 159 | IPR000571 | GO:0046872 | |
Cma10g00690 | 392 | ProSiteProfiles | Zinc finger C3H1-type profile. | 134 | 160 | IPR000571 | GO:0046872 | |
Cma10g00690 | 392 | PANTHER | UNKEMPT FAMILY MEMBER | 9 | 380 | IPR045234 | - | |
Cma10g00690 | 392 | Gene3D | - | 134 | 197 | - | - | |
Cma10g00690 | 392 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 | 9 | 380 | - | - | |
Cma10g00690 | 392 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 138 | 158 | IPR000571 | GO:0046872 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma05g00112 | Cma-Chr5:487440 | Cma10g00690 | Cma-Chr10:3123164 | 6.91E-77 | dispersed | |
Cma09g00326 | Cma-Chr9:1342960 | Cma10g00690 | Cma-Chr10:3123164 | 9.21E-108 | dispersed | |
Cma10g00690 | Cma-Chr10:3123164 | Cma14g00450 | Cma-Chr14:2142180 | 3.60E-62 | dispersed | |
Cma20g00342 | Cma-Chr20:1682067 | Cma10g00690 | Cma-Chr10:3123164 | 2.55E-55 | dispersed | |
Cma01g01767 | Cma-Chr1:11875855 | Cma10g00690 | Cma-Chr10:3123164 | 4.51E-101 | wgd | |
Cma10g00690 | Cma-Chr10:3123164 | Cma11g00671 | Cma-Chr11:3249244 | 0 | wgd | |
Cma10g00690 | Cma-Chr10:3123164 | Cma12g01284 | Cma-Chr12:9983593 | 2.51E-156 | wgd | |
Cma10g00690 | Cma-Chr10:3123164 | Cma12g00622 | Cma-Chr12:3290026 | 3.50E-85 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35735 | PF00642 | zf-CCCH | 2.90E-06 | CL0537 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma10g00690 | - | - | csv:101204432 | 686.411 |