Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00720 ATGGAGGTTCTTCTTCCGCTGGTGATTCTTTGTGTCGTTGCTGCTAATGCGTCCGACCTTCGGGAAATCGCAGCTTCACTCGGTGCTCCTACCGTGTCGCCGCCGGTTAATAGCATGCCTCAGCCGCCTTCACCAGTTCAACCCAGTTCCCGGCGTGACCAAACAAGCAATTCATCACCGAATGTAGCTCCAATCCCTGACCCAATTTCTCCAGAGCCTAATATCTCTCCAGTAGTTGCTATTTCGCCCAAAGCTGGTGACATAAAGAGCTTAGAAGCACCAGTAGCTACACCTTCTAATGCATTGCCTAAGTATATGCTACCTGTGAATCATTCCCCAAAGGAAGCTCCTTCTACTCACAATGACATGGGACGTTCTCGTGACACTCAATGGCCAATCGTTCCACCGCGAAAAGCTCCGTTTCGTAGAGGAAATCTTTCTCCAACATCTCCTGTGCCTTCAAATTATAAGCATCATAGAAGGAGGAATCATATCATTAGTCACGCACCTGCACCTGCACCGTCATATCCGATTTCGTCTCGTACGATAGAAACGTCAGGACCAGTTGTTTCCACGGCACAACATTCACACGAGAGAGGAGACTACACTCCACCCATGGAGTCAGATCCTTCGTCGATATCTCCTTCACATTATGATCATCCACCGCTTGTGACTCATGTTTCGCCTTCTCCTTCACCATACCAGAAAATGTCTGGTCATACTGAAAGACATTTTTATCCTCCTAAAGCTTCACCTTCACCCTTGAAACCTTGGGCAAAAAGCCCGAAGATGCCACCGCTGCGATCGATACATACATTGCCCCCTCCACCTCCCAATGAAGATTGTTCAGCTACCCTGTGCACCGAGCCATATACAAACACTCCCCCAGGATCTCCCTGCGGTTGTGTTTGGCCCATGCAAATTGGACTTCGCCTCAGTGTTTCGCTATATACGTTCTTCCCCCTGGTTTCGGAGCTGGCAGCAGAAATCGCTGCTGGGGTGTTCGTAAAGCAAAGCCAAGTACGCGTCATTGGAGCTAATGCAGCTAACCAGCAACCAGATAAGACTGTTGTTCTCATTGACTTAGTCCCACTTGGGGAAAAATTTGACAATACTACAGCCTTTTTGACTTACCAAAGGTTTTGGCATAAGAAAGTTTCTGTCAAAGCTTCCTATTTTGGGAAATATGAAGTATTATATGTTCGATATCCGGGTTTACCTCAATCACCTCCTTCTGGAGATTCAGGAATAGATAATGAGCCTTATTATAGTAATAGTAACGATGCGAGGACGGTTAAACCGATTGGCGTCGATGTACAGAACATACAGCACAAAGACCGGATAAGTGGTGGTATGATTGCCATCATTGCTCTATCAACTACTGTTGCAGTCGTCTTATGTGTTGCGACTGCTTGGATTTTGCTCCTCAGATGCAACGATGGCGTTTGTCAGCCGAAACCAACTCCACATGCTTTGGTATCTTCCCTTAATAAACCATCAGGTGCTGGTGGATCAGTCATGGCAGCCATGCCTAGTTCTGCTTCTTTATCCTTTGGATCTAGTATTGCCCCATATTCAGGATCAGCCAAGACATTCAGTGCCTCGGACATAGAGAGAGCCACCAATAATTTTGACCCTTCAAGGATATTAGGGGAGGGTGGCTTTGGACGTGTTTACAGAGGCACTCTTGAAGACGGTCCCGAAGTAGCAGTTAAAGTTCTCAAGAGAGATGATCATCAGGGCGGTCGAGAATTCTTGGCTGAAGTCGAAATGCTTAGCCGTCTTCACCATAGAAACTTGGTCAAGTTGATTGGAATATGTACTGAGGAGGGTAGCCGCTCCCTGGTGTATGAACTTATTCCAAATGGCAGTGTGGAATCTCACTTACATGATGTTGATAAGGAAACTGCCCCACTTGATTGGGACGCTCGGATGAAGATAGCACTTGGTGCTGCTCGGGGTTTATCCTATCTACACGAGGATTCGAGTCCGAGAGTCATACATCGAGACTTCAAATCCAGCAATATCTTATTAGAACATGATTTTACACCAAAAGTTTCGGACTTTGGGTTGGCTAGAACGGCAATGGATGAGGAAAGCAGACACATTTCGACACGCGTCATGGGAACTTTCGGATATGTGGCTCCGGAATATGCAATGACGGGGCATTTACTTGTGAAGAGTGATGTTTATAGCTACGGGGTCGTTCTTCTCGAGCTATTAACTGGGAGGAAACCAGTTGACATGTCGCAACCGTCTGGTGAAGAAAATCTTGTTGCTTGGGCTCGTCCACTACTCACGAGCAAAGAAGGTCTAGATGTTATAATTGACAAATCACTCGATTCTAGTGTTCCTTTTGAAAATATTGCCAAAGTGGCTGCCATTGCTTCAATGTGTGTGCAACCAGAGGTGTCACATCGACCTTTCATGGGCGAGGTCGTTCAAGCTTTGAAACTAGTATGCAACCAATGCAACGATGCTCGAGAAGCAATCTCACAAGCTGGTTCGAGCCTAGATAATTCGTCTGTGGAGATGAATGACGAGACATTGAGTTCAAGATACATGCTAGACTCTTTTAATAGCGAATATTTAGTATCTGGCTCAATTTCAGGTCTTGATGTCATCGATACACGTCTCTCAATCTCGGGTATGTTAAATACTTCAATTGGAATCGGAATGCTAGAATCTAGATCACTCGAAAGATGTTTAAGTTCTAGTCCTCTTCGAAACGGGAAAGGTAAGAGGCACTTCTGGCAAAGAATGAGAAGATACTCTGGAAGTAGCATCAGTGAACATGGAATGCCTAGATTATGGTCCGGTTCTACCTAA 2829 45.78 MEVLLPLVILCVVAANASDLREIAASLGAPTVSPPVNSMPQPPSPVQPSSRRDQTSNSSPNVAPIPDPISPEPNISPVVAISPKAGDIKSLEAPVATPSNALPKYMLPVNHSPKEAPSTHNDMGRSRDTQWPIVPPRKAPFRRGNLSPTSPVPSNYKHHRRRNHIISHAPAPAPSYPISSRTIETSGPVVSTAQHSHERGDYTPPMESDPSSISPSHYDHPPLVTHVSPSPSPYQKMSGHTERHFYPPKASPSPLKPWAKSPKMPPLRSIHTLPPPPPNEDCSATLCTEPYTNTPPGSPCGCVWPMQIGLRLSVSLYTFFPLVSELAAEIAAGVFVKQSQVRVIGANAANQQPDKTVVLIDLVPLGEKFDNTTAFLTYQRFWHKKVSVKASYFGKYEVLYVRYPGLPQSPPSGDSGIDNEPYYSNSNDARTVKPIGVDVQNIQHKDRISGGMIAIIALSTTVAVVLCVATAWILLLRCNDGVCQPKPTPHALVSSLNKPSGAGGSVMAAMPSSASLSFGSSIAPYSGSAKTFSASDIERATNNFDPSRILGEGGFGRVYRGTLEDGPEVAVKVLKRDDHQGGREFLAEVEMLSRLHHRNLVKLIGICTEEGSRSLVYELIPNGSVESHLHDVDKETAPLDWDARMKIALGAARGLSYLHEDSSPRVIHRDFKSSNILLEHDFTPKVSDFGLARTAMDEESRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPSGEENLVAWARPLLTSKEGLDVIIDKSLDSSVPFENIAKVAAIASMCVQPEVSHRPFMGEVVQALKLVCNQCNDAREAISQAGSSLDNSSVEMNDETLSSRYMLDSFNSEYLVSGSISGLDVIDTRLSISGMLNTSIGIGMLESRSLERCLSSSPLRNGKGKRHFWQRMRRYSGSSISEHGMPRLWSGST 942
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3251540 3256332 - CmaCh10G007200.1 Cma10g00720 302036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00720 942 MobiDBLite consensus disorder prediction 178 198 - -
Cma10g00720 942 MobiDBLite consensus disorder prediction 101 214 - -
Cma10g00720 942 Gene3D Phosphorylase Kinase; domain 1 520 619 - -
Cma10g00720 942 PANTHER OS01G0750732 PROTEIN 95 941 - -
Cma10g00720 942 Pfam Protein tyrosine and serine/threonine kinase 548 817 IPR001245 GO:0004672|GO:0006468
Cma10g00720 942 MobiDBLite consensus disorder prediction 48 63 - -
Cma10g00720 942 CDD STKc_IRAK 550 818 - -
Cma10g00720 942 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 95 941 - -
Cma10g00720 942 ProSitePatterns Protein kinases ATP-binding region signature. 550 572 IPR017441 GO:0005524
Cma10g00720 942 ProSitePatterns Serine/Threonine protein kinases active-site signature. 666 678 IPR008271 GO:0004672|GO:0006468
Cma10g00720 942 ProSiteProfiles Protein kinase domain profile. 544 820 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00720 942 MobiDBLite consensus disorder prediction 230 264 - -
Cma10g00720 942 MobiDBLite consensus disorder prediction 30 78 - -
Cma10g00720 942 SUPERFAMILY Protein kinase-like (PK-like) 523 817 IPR011009 -
Cma10g00720 942 Gene3D Transferase(Phosphotransferase) domain 1 620 842 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00720 Cma11g00695 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01711 Cma-Chr2:9635413 Cma10g00720 Cma-Chr10:3251540 0 dispersed
Cma10g00720 Cma-Chr10:3251540 Cma19g00126 Cma-Chr19:744556 0 dispersed
Cma10g00720 Cma-Chr10:3251540 Cma11g00695 Cma-Chr11:3381612 5.56E-10 wgd
Cma10g00720 Cma-Chr10:3251540 Cma17g00725 Cma-Chr17:5938256 0 wgd
Cma10g00720 Cma-Chr10:3251540 Cma08g00773 Cma-Chr8:4659704 2.86E-22 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68849 PF07714 PK_Tyr_Ser-Thr 2.70E-49 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00720 - - cpep:111780726 1796.94