Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00741 ATGAGGAAGGGAGGCTTCAGCAACAACCTCAACCTCAAGCTCAATCTCCCTCAAGATGACCAATCCATAGCGAAGTTCCTAACGCAGAGCGGCACGTTTAAGGATGGCGATCTGCTCGTAAACAGAGATGGGGTTCGGATTGTTTCCAAGAGTGAAGTTGAAGCACCACCTCCGATTAAGCCTACAGATGATCAGCTGAGTTTAGCGGACATAGACATAATTAAAGTCATTGGAAAAGGAAATGGTGGAACCGTGCAATTAGTTCAGCACAAATGGACTGCTCAGTTTTTTGCATTGAAGGTAATTCAGATGAAAATTGAGGAGTCTCACCGCAAGCAGATTGCACAAGAATTGAAAATCAATCAATCAGCGCAGTGCCCTTATATAGTTGTCTGTTACCAATCTTTCTATGATAATGGCTCTATATATATCATCCTAGAGTACATGGATGGAGGTTCTTTAGCAGATTTCTTGAAAAAGGTTAAACAAGTTCAAGAACCATATCTTGCTGCCCTTTGTAAGCAGGTGCTGAAGGGGTTGTCATACCTTCACCATGATCGACACATCATTCATCGGGACTTAAAGCCTTCTAATTTATTAATAAATCATAGAGGGGAAGTCAAGATTACTGACTTTGGTGTCAGTGCGATTATGGCAAGCACATATGGAGAGGCTAATACTTTTGTTGGCACGTATAACTATATGTCTCCAGAGAGAATTATTGGAGAAAAATATGATAATAAAAGTGACATTTGGAGCTTGGGCCTGATATTTCTCGAGTGTGCAACCGGAAAATTTCCTTATTCCCCACCAGAGCAAGAGGGAGGATGGGTTAATTTTTATGAGCTTATGGAAGCCATTGTTGAGGGCGAACCTCCTTCTGCTCCGGCTGACCAATTTACTCCCAACTTCTGTTCGTTCATTTCTGCATGTGTGCAAAAGGACCCAAGGGATAGACTGTCAGCACGTGAACTTTTGGAACATCCTTTCATCAAGATGTATGAAGATACAGATATTGACCTGTCATCTTACTTCAATGATGCAGGGTCTCCACTTGCAACTTTCTAA 1068 41.85 MRKGGFSNNLNLKLNLPQDDQSIAKFLTQSGTFKDGDLLVNRDGVRIVSKSEVEAPPPIKPTDDQLSLADIDIIKVIGKGNGGTVQLVQHKWTAQFFALKVIQMKIEESHRKQIAQELKINQSAQCPYIVVCYQSFYDNGSIYIILEYMDGGSLADFLKKVKQVQEPYLAALCKQVLKGLSYLHHDRHIIHRDLKPSNLLINHRGEVKITDFGVSAIMASTYGEANTFVGTYNYMSPERIIGEKYDNKSDIWSLGLIFLECATGKFPYSPPEQEGGWVNFYELMEAIVEGEPPSAPADQFTPNFCSFISACVQKDPRDRLSARELLEHPFIKMYEDTDIDLSSYFNDAGSPLATF 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3371796 3376361 - CmaCh10G007410.1 Cma10g00741 302057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00741 355 CDD PKc_MAPKK_plant_like 69 335 - -
Cma10g00741 355 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Cma10g00741 355 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 9 354 - -
Cma10g00741 355 Pfam Protein kinase domain 73 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00741 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Cma10g00741 355 Gene3D Transferase(Phosphotransferase) domain 1 151 351 - -
Cma10g00741 355 SUPERFAMILY Protein kinase-like (PK-like) 56 337 IPR011009 -
Cma10g00741 355 PANTHER MAP KINASE KINASE 9 354 - -
Cma10g00741 355 Gene3D Phosphorylase Kinase; domain 1 47 150 - -
Cma10g00741 355 ProSiteProfiles Protein kinase domain profile. 71 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00741 355 SMART serkin_6 71 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00741 Cma11g00712 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01373 Cma-Chr5:10326136 Cma10g00741 Cma-Chr10:3371796 5.28E-143 dispersed
Cma10g00741 Cma-Chr10:3371796 Cma12g01275 Cma-Chr12:9924976 2.97E-159 dispersed
Cma01g00023 Cma-Chr1:99519 Cma10g00741 Cma-Chr10:3371796 2.32E-65 wgd
Cma10g00741 Cma-Chr10:3371796 Cma11g00712 Cma-Chr11:3472591 0 wgd
Cma10g00741 Cma-Chr10:3371796 Cma12g01322 Cma-Chr12:10107708 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68851 PF00069 Pkinase 1.80E-71 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00741 K20603 - csv:101204545 685.641