Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00752 ATGGCGGATAAGAAAGGAACGGAACAAGTTGTTTTACGGATTTTGGATGGCGAAGAAGGAGTCGATGCAAGGAATGGTCTCACTAATGGCTCTGTTGCTTCTTTTCCTGATTTTGAGTCAAAAGAAACTCGGAGTGTTAGGTGCGCAATCCCGCAATCCGTGGTTGAGAGCTCTCCTTCACACGAGATTTCCAGAATGAGTTCATTGAAACCTCCAAAAATTCCTGTCGAATCGGCAGTTCGGCGCCCATCATTTGCTCGATCTTCGTTTTCAAAACCGAAATCAAGACTAATAGAGCCGCCTTGTCCTGATGGTGCAAGTTCGGCAGAAGAAAATGCTCAAGCAAAATCAACATCTGGTTCACCATTCTCTAGCTCTCCGAAGATGGACTCACCAGCTAAGATAGCCACTGCGACTAGTCCTAAAGAATCTTTGAAGTCTGCTCCGATAACTCCTAGAACACCATTGGTTGGATCTACTGGAAGTGAGGAGGAAGATGATGAAGAAGTCTACAAAACTGCAGAACTGAAAGTGAAAGAAAAATCAAGGAAGAAATTGAAAAGAGCAGTTTTAATTGAATGGATTGCATTTTTGTGCATAACAGCGTGTTTAATTTCCAGCTTAACAATAGACAAGCTGCTGACTAAAGAGATCTGGGGATTAGGACTGTGGAAATGGTGTGTTTTGGTATTAGTCATTTTCTGTGGCCGTTTATTTTCACAATGGTTTATCAATTGTCTGGTTTTCTTGATTGAAAGAAACTTTCTACTTAAGAGAAAGGTTCTTTATTTTGTCTATGGGCTGAGGAAGAGTGTTATAGTTTTTATTTGGCTGGCTTTGGTTCTTCTAGCGTGGGGTCTATTATTTGATCAAAGCATCAAAAGATCTAAGAAAGTCAATGAGATTCTGAATTATGTTACACGAGCTCTTGCTGCTTCGCTAATTGGAGCAGGATTATGGCTGGTGAAAACTTTGTTGGTGAAGATACTAGCTGCTTCTTTTCAATGCACTCGATTCTTCGATCGAATTCAAGAATCAATCTTCCATCAATATATCCTGCGCATTTTATCAGGACCGCCACTGATGGAGATGGCCGAGAGGGTTGGGAGGGTGGCAAGCGCAGGGCAATTGAGCTTCAGGCATTTGAAGAAAGAAAGAGATGGTGGGAATGAGGGGAAGGAAGAAGTGATTGATGTGGATAAACTCAAAAAGATGAAGCAAGCAAAAGTGTCTGCTTGGACCATGAGAGGGCTTATCAATGTTATAAGGAGTTCAGGGCTGTCCACCATCTCTAATACAATAGAAAATTTTAAGGAGGAAGAGGGTGAGCAAAAAGACAAGGAGATTAACAGTGAATGGGAAGCAAGTGCTGCAGCTTACCAGATTTTCAGGAACGTTGCGAAACCTGGTAGCAAGTATATTGATGAAGAGGACCTCTTTCGTTTTATGAACAAGGAGGAAATTGATAATGTGCTGCCATTGTTTGAAGGAGGGGTTGAGACTGGGAAGATAAAGCGAAAAACCCTTAAGAATTGGCTGGTGAACGTTTATATCGAACGGAAGTCGCTAGCCCACTCATTGAACGACACCAAAACTGCCATAGAGGAGCTAAACAGGCTTGCTTCTGCATTTGTACTGATTGTTATTATCATTGTATGGCTACTTCTGATGGGTTTCTTGACCACACAAGTACTCGTCTTCATTTCATCACAGCTTCTGCTGGTGGTTTTCATGTTTGGTAACACTGCCAAAACTATATTCGAAGCCATCATATTCGTATTCGTGATGCATCCATTTGACGTGGGGGATCGGTGTGTTGTAGATGGTGTGCAGATGATTGTTGAAGAAATGAACATTTTAACCACAATTTTCTTGAGATATGACAATGAGAAAATCTTCTATCCAAATTCTGTTCTGGCCACCAAACCCATCAGTAACTTCTACAGGAGCCCCGAAATGAGTGATTCGATCGACTTTTCGGTTGATTTTTCCACATCAATTGAAAGCATTGGAGCCCTAAAAGCAAGAATAAAATCATATCTTGAAAGCAAACCTCAGTTCTGGCGGCCGAACCACAGCGTGATCGTGAAGGAGATCGAGAACGTCAACAAGATGAAACTGAGTCTATACATCAATCACACCATAAACTTTCAGAACTATGGTGACCGGAGCAGTCGCAGATCGGATCTAGTCTTGGAGCTGAAGAAAATTTTCGAAGATCTGGGCATCAAGTATCATCTGCTACCTCAAGAAGTCCAGCTCAACTATTTTCTACTTCCGAAACCAAAATCCCCAATTCCGGAAATTCGCAGAGCTTTCGAATCATCAATGGCTTCCACTTCTAGAGTTTCACTGGCCCTGCCATTGACTACCGCCACCCACAAGAGACTATCCAACCACGCCTTCTTCAATCCATTGCCTGCTTCTCCTTCCTCAAGGTATCGCAAGGCCATCGCCGCCGCGCCGACATCCAACGGGAGGCTCGTCGCAGTCCGATCGTCCTTAAAGGAGAAGGCCATCACTGGAGTTAGCGCCGCCGCTCTGACGGCCTCGATGGTGATTCCGGAGGTTGCAGAGGCTGCAGGACCTGGAGTCTCCCCGTCGTTGAAGAACTTCTTGCTCAGCATTGCTGCCGGTGGAACTGTGGTGGTGGCAATATTGGGTGCTGTGATAGGCGTCTCCAACTTCGATCCGGTAAAGCGTGGTTGA 2709 44.0 MADKKGTEQVVLRILDGEEGVDARNGLTNGSVASFPDFESKETRSVRCAIPQSVVESSPSHEISRMSSLKPPKIPVESAVRRPSFARSSFSKPKSRLIEPPCPDGASSAEENAQAKSTSGSPFSSSPKMDSPAKIATATSPKESLKSAPITPRTPLVGSTGSEEEDDEEVYKTAELKVKEKSRKKLKRAVLIEWIAFLCITACLISSLTIDKLLTKEIWGLGLWKWCVLVLVIFCGRLFSQWFINCLVFLIERNFLLKRKVLYFVYGLRKSVIVFIWLALVLLAWGLLFDQSIKRSKKVNEILNYVTRALAASLIGAGLWLVKTLLVKILAASFQCTRFFDRIQESIFHQYILRILSGPPLMEMAERVGRVASAGQLSFRHLKKERDGGNEGKEEVIDVDKLKKMKQAKVSAWTMRGLINVIRSSGLSTISNTIENFKEEEGEQKDKEINSEWEASAAAYQIFRNVAKPGSKYIDEEDLFRFMNKEEIDNVLPLFEGGVETGKIKRKTLKNWLVNVYIERKSLAHSLNDTKTAIEELNRLASAFVLIVIIIVWLLLMGFLTTQVLVFISSQLLLVVFMFGNTAKTIFEAIIFVFVMHPFDVGDRCVVDGVQMIVEEMNILTTIFLRYDNEKIFYPNSVLATKPISNFYRSPEMSDSIDFSVDFSTSIESIGALKARIKSYLESKPQFWRPNHSVIVKEIENVNKMKLSLYINHTINFQNYGDRSSRRSDLVLELKKIFEDLGIKYHLLPQEVQLNYFLLPKPKSPIPEIRRAFESSMASTSRVSLALPLTTATHKRLSNHAFFNPLPASPSSRYRKAIAAAPTSNGRLVAVRSSLKEKAITGVSAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGTVVVAILGAVIGVSNFDPVKRG 902
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3429798 3434471 + CmaCh10G007520.1 Cma10g00752 302068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00752 902 Pfam Photosystem II reaction centre X protein (PsbX) 865 901 IPR009518 GO:0009523|GO:0015979|GO:0016020
Cma10g00752 902 SUPERFAMILY Sm-like ribonucleoproteins 588 647 IPR010920 -
Cma10g00752 902 MobiDBLite consensus disorder prediction 52 165 - -
Cma10g00752 902 Gene3D Single helix bin 864 902 - -
Cma10g00752 902 Gene3D - 598 647 IPR023408 -
Cma10g00752 902 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 2 756 IPR016688 -
Cma10g00752 902 MobiDBLite consensus disorder prediction 110 158 - -
Cma10g00752 902 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2 756 - -
Cma10g00752 902 PIRSF Memb_At2g17000 16 799 IPR016688 -
Cma10g00752 902 Pfam Mechanosensitive ion channel 542 744 IPR006685 GO:0016020|GO:0055085
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00752 Cma11g00720 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01013 Cma-Chr8:6353748 Cma10g00752 Cma-Chr10:3429798 0 dispersed
Cma10g00752 Cma-Chr10:3429798 Cma17g00069 Cma-Chr17:327028 0 dispersed
Cma01g01705 Cma-Chr1:11619565 Cma10g00752 Cma-Chr10:3429798 0 wgd
Cma10g00752 Cma-Chr10:3429798 Cma11g00720 Cma-Chr11:3511256 3.92E-96 wgd
Cma10g00752 Cma-Chr10:3429798 Cma05g01410 Cma-Chr5:10502263 2.17E-37 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00752 K22048 - csv:101209209 1263.44