Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00752 ATGGCGGATAAGAAAGGAACGGAACAAGTTGTTTTACGGATTTTGGATGGCGAAGAAGGAGTCGATGCAAGGAATGGTCTCACTAATGGCTCTGTTGCTTCTTTTCCTGATTTTGAGTCAAAAGAAACTCGGAGTGTTAGGTGCGCAATCCCGCAATCCGTGGTTGAGAGCTCTCCTTCACACGAGATTTCCAGAATGAGTTCATTGAAACCTCCAAAAATTCCTGTCGAATCGGCAGTTCGGCGCCCATCATTTGCTCGATCTTCGTTTTCAAAACCGAAATCAAGACTAATAGAGCCGCCTTGTCCTGATGGTGCAAGTTCGGCAGAAGAAAATGCTCAAGCAAAATCAACATCTGGTTCACCATTCTCTAGCTCTCCGAAGATGGACTCACCAGCTAAGATAGCCACTGCGACTAGTCCTAAAGAATCTTTGAAGTCTGCTCCGATAACTCCTAGAACACCATTGGTTGGATCTACTGGAAGTGAGGAGGAAGATGATGAAGAAGTCTACAAAACTGCAGAACTGAAAGTGAAAGAAAAATCAAGGAAGAAATTGAAAAGAGCAGTTTTAATTGAATGGATTGCATTTTTGTGCATAACAGCGTGTTTAATTTCCAGCTTAACAATAGACAAGCTGCTGACTAAAGAGATCTGGGGATTAGGACTGTGGAAATGGTGTGTTTTGGTATTAGTCATTTTCTGTGGCCGTTTATTTTCACAATGGTTTATCAATTGTCTGGTTTTCTTGATTGAAAGAAACTTTCTACTTAAGAGAAAGGTTCTTTATTTTGTCTATGGGCTGAGGAAGAGTGTTATAGTTTTTATTTGGCTGGCTTTGGTTCTTCTAGCGTGGGGTCTATTATTTGATCAAAGCATCAAAAGATCTAAGAAAGTCAATGAGATTCTGAATTATGTTACACGAGCTCTTGCTGCTTCGCTAATTGGAGCAGGATTATGGCTGGTGAAAACTTTGTTGGTGAAGATACTAGCTGCTTCTTTTCAATGCACTCGATTCTTCGATCGAATTCAAGAATCAATCTTCCATCAATATATCCTGCGCATTTTATCAGGACCGCCACTGATGGAGATGGCCGAGAGGGTTGGGAGGGTGGCAAGCGCAGGGCAATTGAGCTTCAGGCATTTGAAGAAAGAAAGAGATGGTGGGAATGAGGGGAAGGAAGAAGTGATTGATGTGGATAAACTCAAAAAGATGAAGCAAGCAAAAGTGTCTGCTTGGACCATGAGAGGGCTTATCAATGTTATAAGGAGTTCAGGGCTGTCCACCATCTCTAATACAATAGAAAATTTTAAGGAGGAAGAGGGTGAGCAAAAAGACAAGGAGATTAACAGTGAATGGGAAGCAAGTGCTGCAGCTTACCAGATTTTCAGGAACGTTGCGAAACCTGGTAGCAAGTATATTGATGAAGAGGACCTCTTTCGTTTTATGAACAAGGAGGAAATTGATAATGTGCTGCCATTGTTTGAAGGAGGGGTTGAGACTGGGAAGATAAAGCGAAAAACCCTTAAGAATTGGCTGGTGAACGTTTATATCGAACGGAAGTCGCTAGCCCACTCATTGAACGACACCAAAACTGCCATAGAGGAGCTAAACAGGCTTGCTTCTGCATTTGTACTGATTGTTATTATCATTGTATGGCTACTTCTGATGGGTTTCTTGACCACACAAGTACTCGTCTTCATTTCATCACAGCTTCTGCTGGTGGTTTTCATGTTTGGTAACACTGCCAAAACTATATTCGAAGCCATCATATTCGTATTCGTGATGCATCCATTTGACGTGGGGGATCGGTGTGTTGTAGATGGTGTGCAGATGATTGTTGAAGAAATGAACATTTTAACCACAATTTTCTTGAGATATGACAATGAGAAAATCTTCTATCCAAATTCTGTTCTGGCCACCAAACCCATCAGTAACTTCTACAGGAGCCCCGAAATGAGTGATTCGATCGACTTTTCGGTTGATTTTTCCACATCAATTGAAAGCATTGGAGCCCTAAAAGCAAGAATAAAATCATATCTTGAAAGCAAACCTCAGTTCTGGCGGCCGAACCACAGCGTGATCGTGAAGGAGATCGAGAACGTCAACAAGATGAAACTGAGTCTATACATCAATCACACCATAAACTTTCAGAACTATGGTGACCGGAGCAGTCGCAGATCGGATCTAGTCTTGGAGCTGAAGAAAATTTTCGAAGATCTGGGCATCAAGTATCATCTGCTACCTCAAGAAGTCCAGCTCAACTATTTTCTACTTCCGAAACCAAAATCCCCAATTCCGGAAATTCGCAGAGCTTTCGAATCATCAATGGCTTCCACTTCTAGAGTTTCACTGGCCCTGCCATTGACTACCGCCACCCACAAGAGACTATCCAACCACGCCTTCTTCAATCCATTGCCTGCTTCTCCTTCCTCAAGGTATCGCAAGGCCATCGCCGCCGCGCCGACATCCAACGGGAGGCTCGTCGCAGTCCGATCGTCCTTAAAGGAGAAGGCCATCACTGGAGTTAGCGCCGCCGCTCTGACGGCCTCGATGGTGATTCCGGAGGTTGCAGAGGCTGCAGGACCTGGAGTCTCCCCGTCGTTGAAGAACTTCTTGCTCAGCATTGCTGCCGGTGGAACTGTGGTGGTGGCAATATTGGGTGCTGTGATAGGCGTCTCCAACTTCGATCCGGTAAAGCGTGGTTGA 2709 44.0 MADKKGTEQVVLRILDGEEGVDARNGLTNGSVASFPDFESKETRSVRCAIPQSVVESSPSHEISRMSSLKPPKIPVESAVRRPSFARSSFSKPKSRLIEPPCPDGASSAEENAQAKSTSGSPFSSSPKMDSPAKIATATSPKESLKSAPITPRTPLVGSTGSEEEDDEEVYKTAELKVKEKSRKKLKRAVLIEWIAFLCITACLISSLTIDKLLTKEIWGLGLWKWCVLVLVIFCGRLFSQWFINCLVFLIERNFLLKRKVLYFVYGLRKSVIVFIWLALVLLAWGLLFDQSIKRSKKVNEILNYVTRALAASLIGAGLWLVKTLLVKILAASFQCTRFFDRIQESIFHQYILRILSGPPLMEMAERVGRVASAGQLSFRHLKKERDGGNEGKEEVIDVDKLKKMKQAKVSAWTMRGLINVIRSSGLSTISNTIENFKEEEGEQKDKEINSEWEASAAAYQIFRNVAKPGSKYIDEEDLFRFMNKEEIDNVLPLFEGGVETGKIKRKTLKNWLVNVYIERKSLAHSLNDTKTAIEELNRLASAFVLIVIIIVWLLLMGFLTTQVLVFISSQLLLVVFMFGNTAKTIFEAIIFVFVMHPFDVGDRCVVDGVQMIVEEMNILTTIFLRYDNEKIFYPNSVLATKPISNFYRSPEMSDSIDFSVDFSTSIESIGALKARIKSYLESKPQFWRPNHSVIVKEIENVNKMKLSLYINHTINFQNYGDRSSRRSDLVLELKKIFEDLGIKYHLLPQEVQLNYFLLPKPKSPIPEIRRAFESSMASTSRVSLALPLTTATHKRLSNHAFFNPLPASPSSRYRKAIAAAPTSNGRLVAVRSSLKEKAITGVSAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGTVVVAILGAVIGVSNFDPVKRG 902
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3429798 3434471 + CmaCh10G007520.1 Cma10g00752 302068

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00752 902 Pfam Photosystem II reaction centre X protein (PsbX) 865 901 IPR009518 GO:0009523|GO:0015979|GO:0016020
Cma10g00752 902 SUPERFAMILY Sm-like ribonucleoproteins 588 647 IPR010920 -
Cma10g00752 902 MobiDBLite consensus disorder prediction 52 165 - -
Cma10g00752 902 Gene3D Single helix bin 864 902 - -
Cma10g00752 902 Gene3D - 598 647 IPR023408 -
Cma10g00752 902 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 2 756 IPR016688 -
Cma10g00752 902 MobiDBLite consensus disorder prediction 110 158 - -
Cma10g00752 902 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2 756 - -
Cma10g00752 902 PIRSF Memb_At2g17000 16 799 IPR016688 -
Cma10g00752 902 Pfam Mechanosensitive ion channel 542 744 IPR006685 GO:0016020|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00752 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - csv:101209209 1263.44
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00752 Cma11g00720 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01013 Cma-Chr8:6353748 Cma10g00752 Cma-Chr10:3429798 0 dispersed
Cma10g00752 Cma-Chr10:3429798 Cma17g00069 Cma-Chr17:327028 0 dispersed
Cma01g01705 Cma-Chr1:11619565 Cma10g00752 Cma-Chr10:3429798 0 wgd
Cma10g00752 Cma-Chr10:3429798 Cma11g00720 Cma-Chr11:3511256 3.92E-96 wgd
Cma10g00752 Cma-Chr10:3429798 Cma05g01410 Cma-Chr5:10502263 2.17E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g105 . . . . Bpe01g00608 . . Bma11g00602 Cmo10g00779 Cmo11g00734 . . . . . Cpe04g01033 . . . . . . . . . . . . . . . . . . . Lsi06g00313 . . Cme02g00283 . Blo14g00566 . . . . . . . . . Cma10g00752 Cma11g00720 Car10g00675 . . . . . . . . . . . . . . . . . . Csa01g02964 Chy02g01258 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma12g00875 . 144 504 Mechanosensitive Ion Channel Family AT4G00290 64.8 9.3e-139 491.1
Cma16g00747 . 64 727 Mechanosensitive Ion Channel Family AT5G10490 58.6 2.3e-196 682.9
Cma05g00546 . 10 704 Mechanosensitive Ion Channel Family AT5G10490 55.5 8.3e-191 664.5
Cma12g00199 . 61 686 Mechanosensitive Ion Channel Family AT5G10490 57.4 1.2e-189 660.6
Cma05g00546 . 10 684 Mechanosensitive Ion Channel Family AT1G58200 57.4 1.8e-201 699.9
Cma12g00199 . 10 502 Mechanosensitive Ion Channel Family AT1G58200 67.6 6.4e-191 664.8
Cma16g00747 . 6 710 Mechanosensitive Ion Channel Family AT1G58200 50.4 7.6e-176 614.8
Cma20g00732 . 50 938 Mechanosensitive Ion Channel Family AT1G53470 55.6 1.3e-263 906.7
Cma20g00732 . 50 933 Mechanosensitive Ion Channel Family AT3G14810 53.1 1.6e-247 853.2
Cma20g00732 . 50 938 Mechanosensitive Ion Channel Family AT1G78610 58.8 2.6e-282 968.8
Cma11g01360 . 65 932 Mechanosensitive Ion Channel Family AT1G78610 52.0 5.9e-234 808.1
Cma20g00732 . 229 933 Mechanosensitive Ion Channel Family AT2G17000 59.7 8.4e-233 804.3
Cma11g01360 . 270 926 Mechanosensitive Ion Channel Family AT2G17000 56.6 5.9e-202 701.8
Cma10g00752 CST 58 754 Mechanosensitive Ion Channel Family AT5G12080 53.4 2.8e-200 696.0
Cma01g01705 . 64 720 Mechanosensitive Ion Channel Family AT5G12080 50.2 2.3e-165 580.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003553 4 1 2 4 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 3 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00752 Cma_Chr10 FPKM 3.78823 3.965348 0.528102 0.53586 16.017347 16.967306 14.422837 0.117494 0.2033 0.322796