Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00759 ATGAGCGCTAGAAGTATGTTTCCCTTCACCTCAGCTCAGTGGCAGGAGCTTGAAAATCAAGCTCTCGTCTTCAAATACATGGTTTCTGGTGTTCCTATACCTCCTGATCTCCTTTTCAGTATTAAAAGAAGTACCTTGGAGTCTCCTTTCACTTCTAAGCTATTCCCACACCATTCTCAACATGTTGGATGGAACTGTTTGCAGATGAGTTTGGGGAGGAAGATAGACCCAGAACCAGGGAGGTGCAGGAGAACTGATGGGAAAAAGTGGAGATGCTCAAAAGAGGCGTACCCAGATTCGAAATACTGTGAGAGGCACATGCATAGAGGCAAGAATCGTTCAAGAAAGCCTGTGGATGTTCTGAAAACAACAGCAACAAACGAGTTAAACCACCTCTCAAATCAAGCATTTTCTTCCTTAAATAAGAACTCATCCCTACACTCCTATCGGCCCTTCCCCGCTCCTCAAATGTCTTCAAATCCTAATGGGAATGGCATATCAACCAAAGACACCAATACCCTCTTGCTTCTGGATTCTGGTTCTTACTCGGACAGAAGCCCAGATTACAGGTACACTTATGGGCTAAAAGAGGAAGTGGATGAACATGTTTTCTTCTCGCAAGAACCATCTGAAGCTACTGCGAGAGCTGATTTCTCTGCTTCTTCCACCGTTGATTCTCTGCAACTGACACCACTAACGATGAGTTGTTCTTCTCTATACCCAAAACAAAACAACTTCTCCTCTCTGCAGAGTGGTCAATCATGTTATCAGCTTCACCAGAGCCTCACAGACCCTTTGAAGCAACAAAAGAGAGAGGAATCACAGAAGAAAGTTCATCGATTCTTCGATGAATGGCCTCAAAAAGGAGGAGGATCATGGCTTGATTTTAACGATAAATCGTCAAATATTGGCTCAGTTTCCACCACTCGGCTCTCAATTTCCATTCCCACCGCTTCCAACGAACTCCCCATTTTCAGATCCAAAAACCCATAA 993 44.11 MSARSMFPFTSAQWQELENQALVFKYMVSGVPIPPDLLFSIKRSTLESPFTSKLFPHHSQHVGWNCLQMSLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVDVLKTTATNELNHLSNQAFSSLNKNSSLHSYRPFPAPQMSSNPNGNGISTKDTNTLLLLDSGSYSDRSPDYRYTYGLKEEVDEHVFFSQEPSEATARADFSASSTVDSLQLTPLTMSCSSLYPKQNNFSSLQSGQSCYQLHQSLTDPLKQQKREESQKKVHRFFDEWPQKGGGSWLDFNDKSSNIGSVSTTRLSISIPTASNELPIFRSKNP 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3480515 3482350 - CmaCh10G007590.1 Cma10g00759 302075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00759 330 Pfam WRC 77 118 IPR014977 -
Cma10g00759 330 Pfam QLQ 8 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cma10g00759 330 PANTHER - 5 318 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cma10g00759 330 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cma10g00759 330 SMART QLQ_2 7 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cma10g00759 330 MobiDBLite consensus disorder prediction 148 171 - -
Cma10g00759 330 PANTHER GROWTH-REGULATING FACTOR 6 5 318 - -
Cma10g00759 330 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g01420 Cma10g00759 CCT
Cma05g01420 Cma10g00759 ECH
Cma10g00759 Cma11g00725 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00034 Cma-Chr1:133440 Cma10g00759 Cma-Chr10:3480515 2.21E-72 dispersed
Cma02g00475 Cma-Chr2:2501887 Cma10g00759 Cma-Chr10:3480515 8.73E-69 dispersed
Cma10g00759 Cma-Chr10:3480515 Cma14g01236 Cma-Chr14:9788235 2.72E-70 dispersed
Cma12g01312 Cma-Chr12:10074353 Cma10g00759 Cma-Chr10:3480515 9.54E-19 dispersed
Cma10g00759 Cma-Chr10:3480515 Cma11g00725 Cma-Chr11:3543552 4.06E-177 wgd
Cma10g00759 Cma-Chr10:3480515 Cma05g01420 Cma-Chr5:10540072 1.06E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35741 PF08879 WRC 1.10E-20 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00759 - - cpep:111780092 656.751