Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma10g00776 | ATGGAGCAACTTATATCCGTTCTAACGCATTGCAACACCGGCAGTCTAGCAACAGCGGGATATGGTACCGCCCTCGGTGTAATTCGTGCACTTCACTCTGCCGGTGTGTTAGAAAGGGCATACTGCACCGAAACACAGCCCTTTAATCAAGGATCTCGACTCACAGCCTATGAGTTGGTCCATGAAAAGATACCTTCTACTCTGATAGCCGATTCCGCTGCTGCTGCCTTGATGACATTTGGAAGAGTGAATGCTGTTGTAGTCGGGGCAGATCGTGTAGCTGCAAATGGTGATACTGCAAATAAGATTGGAACCTATAGTCTTGCATTGTGTGCAATGCATCACAAGATTCCGTTCTTTGTGGCTGCACCATTGACTTCCATAGACTTATCCCTTTCTTCTGGAGAAGAAATTGTTATAGAGGAAAGATCTCCCAACGAGTTGTTGGACTCTCGTGGAGGTCTCCGCGAGCAAGGCGCTGCGTCTGGCATCGCTGTCTGGAACCCCGCTTTTGACGTTACTCCTGCTCATCTGATCTGTGGAATTATAACTGAAAAGGAGTTTGTTCGAAAGACAGCGGAGACGTCTACGTAG | 594 | 47.98 | MEQLISVLTHCNTGSLATAGYGTALGVIRALHSAGVLERAYCTETQPFNQGSRLTAYELVHEKIPSTLIADSAAAALMTFGRVNAVVVGADRVAANGDTANKIGTYSLALCAMHHKIPFFVAAPLTSIDLSLSSGEEIVIEERSPNELLDSRGGLREQGAASGIAVWNPAFDVTPAHLICGIITEKEFVRKTAETST | 197 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 3550931 | 3556155 | - | CmaCh10G007760.1 | Cma10g00776 | 302092 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma10g00776 | 197 | PANTHER | METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE | 6 | 194 | - | - | |
| Cma10g00776 | 197 | SUPERFAMILY | NagB/RpiA/CoA transferase-like | 6 | 188 | IPR037171 | - | |
| Cma10g00776 | 197 | Gene3D | - | 5 | 188 | IPR042529 | - | |
| Cma10g00776 | 197 | PANTHER | METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE | 6 | 194 | - | - | |
| Cma10g00776 | 197 | TIGRFAM | salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase | 3 | 190 | IPR005251 | - | |
| Cma10g00776 | 197 | Pfam | Initiation factor 2 subunit family | 6 | 186 | IPR000649 | GO:0044237 | |
| Cma10g00776 | 197 | TIGRFAM | eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins | 5 | 188 | IPR011559 | GO:0044249 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma10g00776 | Cma11g00742 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma10g00776 | Cma-Chr10:3550931 | Cma15g00822 | Cma-Chr15:4132604 | 5.40E-15 | dispersed | |
| Cma10g00776 | Cma-Chr10:3550931 | Cma11g00742 | Cma-Chr11:3613186 | 3.96E-112 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma10g00776 | K08963 | - | csv:101210526 | 346.665 |