Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00786 ATGGCGACAGCTCAACTCGCTGGGTCTTTAATTTCTGCTAGGAACTTGCCTTCTTTCAGTGGGCTTCGACCTTCTGCGGTGAAATTCTCTCCTTCTGTTGCTCATGTTAGAGTCGGGGGTCTGGCTAAGAGATCTTACACTGGCTTGGTCGTCAGAGCTGCTACTGTGGTTGCTCCAAAGTACACTTCAATCAAGCCGTTGGGCGATAGAGTGTTGGTGAAGATAAAGGAAGCTGAAGAGAAGACTGATGGAGGGATTTTACTTCCAACAACCGCTCAGTCTAAACCCCAAGGAGGAGAGGTTGTTGCAGTTGGAGAAGGCAAGACAATCGGAAACACCAAAGTGGAAGCTAGTGTAAAGACTGGTGCTCAAGTAGTGTACTCCAAGTATGCTGGAACTGAGCTAGAGTTCAACGGTTCAAAGCATCTTATCCTGAAGGAAGACGATATAGTCGGTATACTAGAAACAGATGACGCGAAAGATCTTCAGCCCCTAAATGACAGGGTCTTGATCAAGGTGGCTGAGGCTGAGGAGAAAACAGCCGGAGGTTTGTTGCTGACAGAAGCAAGTAAAGAGAAACCGTCCATCGGAACGGTGATAGCAGTTGGCCCTGGTCATCTGGAGGAGGATGGCAAGAGGAAACCGCTATCCATCGCCGTGGGAGATAACGCAATGTACTCGAAGTATGCCGGGAACGAGTTCAAGGGTAAAGATGGCTCTGATTACATCGCATTGAGGGCTTCGGACGATCGCCGTTCGCCGTTTTCTTCCTCCGACGGCCACATCGAGCCAGCGCCTTCCCTCCCTTTGCTTTCTCTGCTCCCGACTGCCGAACTGTCCAATTTCTCTAACGATTTTTCTCTCATGGGTTCAGACGTGGAGGCTGTGGAAATTAGTAACTTGGAAAGGGGTCTATTGTCTGAATGCAATTCTGATTTGGAACCTGAAATCGATGATGAGCCCGTGTTGTTTGCAGCTTCCTTCCAAGAGATGGAAGACAGCTTTGTTAAGTATCATACAGCACAATGGGTCCTTTACTCCTTGCTTTTGATTTTAGCGTGGGGGATTGGGTTGTTGATGCTGCTTTATCTACCAATAAGACGATACGTTTTGCGGAAAGATATTCAATCGAAAAAGCTTTATCTTACACCAAATTCTATAATCTACAAGGTTACAAGACCTGTACCTTTTCCATGTTTTGGAGTATTGAAGAAAGAGAAGCATGTTTTGTTGCCTTCAGTGGCAGACATTATAGTTGAACAAGGATATCTACAGTCTCTCTATGGAGTTTACTCTCTTAGGATAGAGAATGCTGGCCTGAGAAGACCACCTGGTGATGACGTTCAAATTCAAGGAGTTACAGACCCAATTGCATTTAAAAAGGCTGTTCTAATGCGTCTCTCTGATATGAGGAATGATGGCAGTGAAGAAGTTCCAAATACAAGGGTGACATCTCCATCGAAATCTCTAAAGTATGACCCGTACTTCTATTCGGGGGAACGAGTACTTCAGAAAGTAGATGAGGTTGGAAGCTCTGTGAAGATGCTGCTATCCGAGCACCGAAACGGTAGAAGACCAGTCCCAGTTTTTCAAGGATTGGAGCTGAATAAGCGGAAGAAAATATATTGTATTTATAAGTTGTAG 1644 45.62 MATAQLAGSLISARNLPSFSGLRPSAVKFSPSVAHVRVGGLAKRSYTGLVVRAATVVAPKYTSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKVEASVKTGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEKTAGGLLLTEASKEKPSIGTVIAVGPGHLEEDGKRKPLSIAVGDNAMYSKYAGNEFKGKDGSDYIALRASDDRRSPFSSSDGHIEPAPSLPLLSLLPTAELSNFSNDFSLMGSDVEAVEISNLERGLLSECNSDLEPEIDDEPVLFAASFQEMEDSFVKYHTAQWVLYSLLLILAWGIGLLMLLYLPIRRYVLRKDIQSKKLYLTPNSIIYKVTRPVPFPCFGVLKKEKHVLLPSVADIIVEQGYLQSLYGVYSLRIENAGLRRPPGDDVQIQGVTDPIAFKKAVLMRLSDMRNDGSEEVPNTRVTSPSKSLKYDPYFYSGERVLQKVDEVGSSVKMLLSEHRNGRRPVPVFQGLELNKRKKIYCIYKL 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3598452 3606596 + CmaCh10G007860.1 Cma10g00786 302102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00786 547 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 249 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cma10g00786 547 ProSitePatterns Chaperonins cpn10 signature. 162 186 IPR018369 GO:0005524|GO:0006457
Cma10g00786 547 CDD cpn10 162 249 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cma10g00786 547 Hamap Co-chaperonin GroES [groES]. 161 255 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cma10g00786 547 PRINTS 10kDa chaperonin signature 120 132 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cma10g00786 547 PRINTS 10kDa chaperonin signature 141 154 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cma10g00786 547 PRINTS 10kDa chaperonin signature 86 107 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cma10g00786 547 PRINTS 10kDa chaperonin signature 64 79 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cma10g00786 547 Gene3D GroES chaperonin 57 157 IPR037124 GO:0006457
Cma10g00786 547 Gene3D GroES chaperonin 158 249 IPR037124 GO:0006457
Cma10g00786 547 SUPERFAMILY GroES-like 62 155 IPR011032 -
Cma10g00786 547 Hamap Co-chaperonin GroES [groES]. 63 155 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cma10g00786 547 SUPERFAMILY GroES-like 161 249 IPR011032 -
Cma10g00786 547 Pfam Chaperonin 10 Kd subunit 162 249 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cma10g00786 547 Pfam Chaperonin 10 Kd subunit 64 153 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cma10g00786 547 SMART Cpn10_2 63 154 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cma10g00786 547 SMART Cpn10_2 161 249 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cma10g00786 547 CDD cpn10 63 154 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cma10g00786 547 PANTHER 20 KDA CHAPERONIN, CHLOROPLASTIC 1 249 - -
Cma10g00786 547 ProSitePatterns Chaperonins cpn10 signature. 64 88 IPR018369 GO:0005524|GO:0006457
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g01095 Cma-Chr7:5914598 Cma10g00786 Cma-Chr10:3598452 2.74E-07 dispersed
Cma07g01266 Cma-Chr7:7022124 Cma10g00786 Cma-Chr10:3598452 2.15E-140 dispersed
Cma10g00786 Cma-Chr10:3598452 Cma08g00922 Cma-Chr8:5756954 9.20E-42 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00786 K04078 - csv:101212396 437.958