Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00804 ATGGGCGCCGGAGAGGAGAAGCAACCGGAGGCATCGCTCGAGAATAATATAAGCGCAGTATCTTCCATATCGGCAATTGCAGAGGACCTGCAGCGTTCGGTTGTTCAATCGAAGGATTCTGCTATTCGCTCTGCTCGTTCTCTCCAAGAGGCCTCTTCCTCACATATCCGTTCGTTTCAGGATTTTGTACCCCAAGCAGCATCACAGTTTAAAACTCACGAGGATGCTTTTTTCCGCAAAGTTAAAGATGAGTTTATGATAGCAAGGGAACACCCAGCTGCTACGATTGGAGTTGCTCTTTCAGCTGCCCTTCTTGTTATGCGAGGGCCAAGAAGATTTCTGTTTCGTCATACGTTGGGTCGATTTCAAACTGAGGAGGCAATTTTTTCAAAGGCTGAGAAGCACGTGAAGGAGTTGAACCTTTCAGTGGACTTGATGAAGAAGGAGAGCAAAAAACTACTTGAGAGGGCTGCTCTAGCTGAAAAGGATATGAAATACGGCTACAACGAGCTGATGAATGCTGGAAGTCAAATTCAACATCTTTCAAGGTCAATTTACAAGGCTGAAGCCCAAGCTGCAGATTTGATGGAAGGGCTGCGGGAAATTTCTGGGAGGGACGCATTAAAACTTCGAGCAGAGGTGGCTTCGATGGCAATGTTTTTGAAGCGCCATAGGAGTTCGCTTGAAAATAGGGCGATGAAAGTCTCTGAATTGGGGATTCCACTGTGA 729 46.5 MGAGEEKQPEASLENNISAVSSISAIAEDLQRSVVQSKDSAIRSARSLQEASSSHIRSFQDFVPQAASQFKTHEDAFFRKVKDEFMIAREHPAATIGVALSAALLVMRGPRRFLFRHTLGRFQTEEAIFSKAEKHVKELNLSVDLMKKESKKLLERAALAEKDMKYGYNELMNAGSQIQHLSRSIYKAEAQAADLMEGLREISGRDALKLRAEVASMAMFLKRHRSSLENRAMKVSELGIPL 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3712691 3720114 - CmaCh10G008040.1 Cma10g00804 302120

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00804 242 PANTHER RGS1-HXK1-INTERACTING PROTEIN 1 8 241 - -
Cma10g00804 242 Coils Coil 136 163 - -
Cma10g00804 242 PANTHER RGS1-HXK1-INTERACTING PROTEIN 1 8 241 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00804 - - - cmax:111485561 449.129
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00804 Cma-Chr10:3712691 Cma17g00492 Cma-Chr17:3062487 6.33E-28 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g10 . Blo03g01399 . . . . . Bma07g01368 Cmo10g00831 . Cma10g00804 . . . Sed12g1675 . Cpe18g00276 Bhi02g01729 Tan09g1016 Cmetu02g1283 . Hepe09g0974 . . . . . . . . . . . Cone18ag0004 Cone11ag1589 Lsi06g00380 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01409 Cam03g1489 Cec03g1526 Cco03g1521 Clacu03g1511 Cmu03g2068 Cre03g1741 . Csa01g03035 Chy02g01315 Cme02g00347
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011377 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00804 Cma_Chr10 FPKM 22.480587 25.410416 32.948532 33.259716 22.440376 16.272043 19.527386 49.241898 53.397709 53.127239